UHGV-1359026 (vOTU-091481)

Viral Genome: UHGV-1359026

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1359026
vOTU ID	vOTU-091481
Representative Genome?	Yes
Source	GVD
Original genome ID	Reyes_2015_F284_T2_NODE_10_length_26760_cov_5.050163
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.26 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9735
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.09
Jumbo phage	No

Genome content
Genome length (bp)	26,760
GC content	52.18%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	40
CDS density	89%
Average CDS length (bps)	594.75
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 65.26)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1359026_1	UniRef90_UPI0018A8F249	202.0	0	helix-turn-helix domain containing protein	N/A
eggNOG-mapper	UHGV-1359026_1	1235790.C805_00037	91.3	5.49e-22	N/A	N/A
KOfam	UHGV-1359026_2	K06909	126.2	3.1e-37	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1359026_2	phrog_10250	164.3	0	N/A	unknown function
UniRef90	UHGV-1359026_2	UniRef90_UPI0018A99FCF	784.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1359026_2	476272.RUMHYD_01756	474.0	0	N/A	N/A
Pfam	UHGV-1359026_2	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1359026_2	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1359026_2	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1359026_2	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1359026_2	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1359026_3	phrog_64	145.0	2.00386e-43	portal protein	head and packaging
UniRef90	UHGV-1359026_3	UniRef90_UPI0018A8A301	731.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1359026_3	673376.F2VHW1_9CAUD	209.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1359026_3	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1359026_3	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1359026_5	phrog_2468	120.2	2.3e-35	head morphogenesis	head and packaging
UniRef90	UHGV-1359026_5	UniRef90_UPI0018AAFC07	647.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1359026_5	1504822.CCNO01000013_gene286	160.0	1.01006e-41	cell adhesion	N/A
Pfam	UHGV-1359026_5	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1359026_5	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1359026_5	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1359026_5	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1359026_6	phrog_5	87.4	2.1e-25	tail completion or Neck1 protein	connector
UniRef90	UHGV-1359026_6	UniRef90_UPI0018AA0B5A	288.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1359026_6	1280685.AUKC01000004_gene1630	110.0	2.9e-29	N/A	N/A
Pfam	UHGV-1359026_6	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1359026_6	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1359026_6	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
Pfam	UHGV-1359026_10	PF08681	N/A	N/A	N/A	DUF1778
structural_annotation	UHGV-1359026_10	PF03869,NF010256	N/A	N/A	N/A	N/A
PHROG	UHGV-1359026_11	phrog_194	51.8	0.000000000000017	head scaffolding protein	head and packaging
UniRef90	UHGV-1359026_11	UniRef90_A0A6B9SU02	149.0	5.21003e-42	Fibronectin autolysin	N/A
structural_annotation	UHGV-1359026_11	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1359026_12	phrog_544	135.6	3.3e-40	major head protein	head and packaging
UniRef90	UHGV-1359026_12	UniRef90_A0A1C6B5R0	554.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1359026_12	1232453.BAIF02000011_gene3359	353.0	0	N/A	N/A
Pfam	UHGV-1359026_12	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-1359026_12	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1359026_14	phrog_17977	86.5	2e-25	N/A	unknown function
UniRef90	UHGV-1359026_14	UniRef90_UPI00141211AB	112.0	1.15e-29	head-tail adaptor protein	N/A
structural_annotation	UHGV-1359026_14	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1359026_15	phrog_1233	82.4	5.8e-24	N/A	unknown function
UniRef90	UHGV-1359026_15	UniRef90_UPI001C39EFB9	120.0	8.51e-33	Dienelactone hydrolase family protein	N/A
eggNOG-mapper	UHGV-1359026_15	357809.Cphy_2967	140.0	1.45006e-41	N/A	N/A
PHROG	UHGV-1359026_16	phrog_17405	43.0	0.0000000000067	head protein	head and packaging
structural_annotation	UHGV-1359026_16	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-1359026_17	phrog_885	95.7	4.1e-28	major tail protein	tail
UniRef90	UHGV-1359026_17	UniRef90_A0A843J9F0	178.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1359026_17	1111121.HMPREF1247_0789	183.0	0	N/A	N/A
structural_annotation	UHGV-1359026_17	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1359026_18	phrog_18646	60.9	1.9e-17	N/A	unknown function
PHROG	UHGV-1359026_20	phrog_23464	274.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1359026_20	665950.HMPREF1025_02660	330.0	0	phage tail tape measure protein	N/A
COG	UHGV-1359026_20	COG5283	N/A	N/A	Phage-related tail protein	N/A
eggNOG-mapper	UHGV-1359026_21	1235797.C816_02660	53.9	0.00000032	N/A	N/A
structural_annotation	UHGV-1359026_21	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1359026_22	phrog_13879	599.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1359026_22	1235797.C816_02659	617.0	0	N/A	N/A
structural_annotation	UHGV-1359026_22	PF14594,PF06588,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-1359026_24	phrog_11157	345.3	0	N/A	unknown function
UniRef90	UHGV-1359026_24	UniRef90_G9YSD2	761.0	0	Big_13 domain-containing protein	N/A
eggNOG-mapper	UHGV-1359026_24	1235797.C816_02657	252.0	0	N/A	N/A
Pfam	UHGV-1359026_24	PF19077	N/A	N/A	Bacterial Ig-like domain	Big_13
Pfam	UHGV-1359026_24	PF09136	N/A	N/A	Glucodextranase, domain B	Glucodextran_B
COG	UHGV-1359026_24	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
structural_annotation	UHGV-1359026_24	PF09136,PF13750,MF_04116,NF032891,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-1359026_28	phrog_22773	45.4	0.0000000000012	N/A	unknown function
KOfam	UHGV-1359026_29	K01448	178.9	0	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1359026_29	phrog_18955	387.7	0	N/A	unknown function
UniRef90	UHGV-1359026_29	UniRef90_A0A1C7FQI4	783.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-1359026_29	1121344.JHZO01000003_gene744	258.0	0	Ami_3	N/A
Pfam	UHGV-1359026_29	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-1359026_29	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-1359026_29	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1359026_29	PF09992,PF01510,PF18342,NF008758,NF040678,COG5632,COG4632,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-1359026_30	phrog_1129	73.7	1.7e-21	holin	lysis
UniRef90	UHGV-1359026_30	UniRef90_A0A1C7FPV3	169.0	0	Enolase	N/A
eggNOG-mapper	UHGV-1359026_30	1226322.HMPREF1545_00069	140.0	2.44947e-42	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1359026_30	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1359026_30	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1359026_31	phrog_937	41.3	0.0000000000066	hemolysin	other
eggNOG-mapper	UHGV-1359026_31	445972.ANACOL_01873	53.5	0.000000103	N/A	N/A
KOfam	UHGV-1359026_32	K14059	246.8	0	int; integrase	N/A
PHROG	UHGV-1359026_32	phrog_1	219.3	0	integrase	integration and excision
UniRef90	UHGV-1359026_32	UniRef90_A0A174GHX2	759.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1359026_32	665956.HMPREF1032_02930	117.0	9.19e-27	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1359026_32	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1359026_32	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1359026_32	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1359026_32	PF00589,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1359026_33	K07727	54.1	0.0000000000000045	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-1359026_33	UniRef90_A0A1V0QCF6	135.0	1.50001e-40	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1359026_33	478749.BRYFOR_09932	80.5	2.54e-19	Transcriptional regulator	N/A
Pfam	UHGV-1359026_33	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1359026_33	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1359026_33	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1359026_35	phrog_2657	169.4	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-1359026_35	UniRef90_A0A1C6B9J9	564.0	0	KilA-N domain	N/A
eggNOG-mapper	UHGV-1359026_35	428125.CLOLEP_01836	435.0	0	COG NOG08824 non supervised orthologous group	N/A
Pfam	UHGV-1359026_35	PF04383	N/A	N/A	KilA-N domain	KilA-N
structural_annotation	UHGV-1359026_35	PF04383,NF033622,COG3943	N/A	N/A	N/A	N/A
PHROG	UHGV-1359026_36	phrog_33872	109.1	2.2e-32	N/A	unknown function
eggNOG-mapper	UHGV-1359026_36	693746.OBV_19740	52.4	0.000000123	N/A	N/A
PHROG	UHGV-1359026_37	phrog_3243	96.5	2.3e-28	N/A	unknown function
eggNOG-mapper	UHGV-1359026_37	428127.EUBDOL_01231	73.6	0.00000000000385	N/A	N/A
structural_annotation	UHGV-1359026_37	PF15072,MF_00075,TIGR00008,COG0361	N/A	N/A	N/A	N/A
PHROG	UHGV-1359026_39	phrog_87	95.1	5.3e-28	metallo-protease	other
UniRef90	UHGV-1359026_39	UniRef90_UPI0012ABB247	300.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1359026_39	693746.OBV_43300	181.0	0	IrrE N-terminal-like domain	N/A
Pfam	UHGV-1359026_39	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1359026_39	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1359026_39	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-1359026_40	UniRef90_UPI0012AC4AD7	197.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1359026_40	693746.OBV_43290	125.0	1.07e-35	addiction module antidote protein HigA	N/A
COG	UHGV-1359026_40	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A