UHGV-1359253 (vOTU-054880)

Viral Genome: UHGV-1359253

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1359253
vOTU ID	vOTU-054880
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0234142
Associated BioSample	SAMN02333958
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.982
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.89
Jumbo phage	No

Genome content
Genome length (bp)	34,018
GC content	58.11%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	63
CDS density	92%
Average CDS length (bps)	494.57
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1359253_3	UniRef90_A0A8F0WD75	84.0	3.42e-17	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1359253_3	1378168.N510_03079	73.2	0.000000000000208	N/A	N/A
KOfam	UHGV-1359253_4	K06400	373.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1359253_4	phrog_95	357.6	0	integrase	integration and excision
UniRef90	UHGV-1359253_4	UniRef90_UPI0019572FB3	551.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1359253_4	1235835.C814_00825	418.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1359253_4	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1359253_4	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1359253_4	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1359253_4	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1359253_4	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
Pfam	UHGV-1359253_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1359253_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1359253_5	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1359253_6	phrog_10292	76.9	9.6e-23	N/A	unknown function
UniRef90	UHGV-1359253_6	UniRef90_A0A416W984	101.0	4.62e-25	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1359253_6	1033810.HLPCO_001631	84.0	3.27e-19	TM2 domain	N/A
Pfam	UHGV-1359253_6	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-1359253_6	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-1359253_6	COG2314	N/A	N/A	N/A	N/A
KOfam	UHGV-1359253_9	K22300	52.2	0.000000000000014	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1359253_9	phrog_2967	42.3	0.0000000000049	transcriptional regulator	transcription regulation
UniRef90	UHGV-1359253_9	UniRef90_A0A1Y4L0A2	130.0	1.14e-36	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1359253_9	748224.HMPREF9436_01444	108.0	1.03e-28	N/A	N/A
Pfam	UHGV-1359253_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1359253_9	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1359253_9	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1359253_12	PF10548	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1359253_14	NF041247	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1359253_15	PF05082	N/A	N/A	N/A	N/A
PHROG	UHGV-1359253_19	phrog_363	40.4	0.00000000004	DNA methyltransferase	other
UniRef90	UHGV-1359253_19	UniRef90_UPI0015701100	57.4	0.000000000699	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1359253_19	693746.OBV_01900	73.2	0.00000000000000981	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
COG	UHGV-1359253_19	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
Pfam	UHGV-1359253_21	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1359253_21	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-1359253_24	phrog_3136	135.0	2.6e-40	N/A	unknown function
UniRef90	UHGV-1359253_24	UniRef90_A0A3D0HBD2	117.0	6.41e-30	ASCH domain-containing protein	N/A
COG	UHGV-1359253_24	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1359253_24	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1359253_25	phrog_38832	89.5	1.9e-26	N/A	unknown function
eggNOG-mapper	UHGV-1359253_25	665956.HMPREF1032_03087	88.6	3.17e-20	N/A	N/A
structural_annotation	UHGV-1359253_25	PF18358	N/A	N/A	N/A	N/A
PHROG	UHGV-1359253_28	phrog_190	103.1	2.7e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1359253_28	UniRef90_A0A845R8D4	129.0	3.25e-35	N/A	N/A
eggNOG-mapper	UHGV-1359253_28	1226322.HMPREF1545_00295	118.0	7.13e-32	N/A	N/A
Pfam	UHGV-1359253_28	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1359253_28	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-1359253_34	K00571	96.5	1.7e-28	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1359253_34	phrog_67	102.4	2.2e-31	DNA methyltransferase	other
UniRef90	UHGV-1359253_34	UniRef90_UPI001E30CE28	269.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1359253_34	1125725.HMPREF1325_1312	208.0	0	N-4 methylation of cytosine	N/A
PADLOC	UHGV-1359253_34	MTase_II_00172	121.9	6.7e-36	Type II methyltransferase	RM
Pfam	UHGV-1359253_34	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1359253_34	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1359253_34	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1359253_35	phrog_3584	114.1	1.1e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1359253_35	537013.CLOSTMETH_02141	74.3	0.000000000000182	N/A	N/A
structural_annotation	UHGV-1359253_35	PF21578,MF_00360	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1359253_36	1297617.JPJD01000059_gene2640	85.1	2.55e-19	N/A	N/A
structural_annotation	UHGV-1359253_36	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1359253_37	phrog_119	48.6	0.00000000000011	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1359253_37	UniRef90_R6M5E4	119.0	8.6e-33	Prophage LambdaBa04 GP54	N/A
eggNOG-mapper	UHGV-1359253_37	1235793.C809_01915	120.0	1.22e-33	HNH endonuclease	N/A
Pfam	UHGV-1359253_37	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1359253_37	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1359253_38	phrog_1066	128.4	2.7e-38	N/A	unknown function
eggNOG-mapper	UHGV-1359253_38	1341151.ASZU01000004_gene265	124.0	4.64e-35	N/A	N/A
structural_annotation	UHGV-1359253_38	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-1359253_39	phrog_9	376.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1359253_39	UniRef90_A0A1Y3W5R1	774.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1359253_39	1203606.HMPREF1526_00981	725.0	0	Terminase	N/A
Pfam	UHGV-1359253_39	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1359253_39	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1359253_39	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1359253_39	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1359253_40	phrog_12	178.4	0	portal protein	head and packaging
UniRef90	UHGV-1359253_40	UniRef90_C4GAS6	497.0	0	Putative phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-1359253_40	626523.GCWU000342_01027	497.0	0	Portal protein	N/A
Pfam	UHGV-1359253_40	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1359253_40	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1359253_40	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1359253_41	K01358	132.9	3.4e-39	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1359253_41	phrog_94	192.2	0	head maturation protease	head and packaging
UniRef90	UHGV-1359253_41	UniRef90_UPI0018979DC8	203.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-1359253_41	1280689.AUJC01000011_gene1520	172.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1359253_41	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1359253_41	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1359253_41	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1359253_42	phrog_10	177.0	0	major head protein	head and packaging
UniRef90	UHGV-1359253_42	UniRef90_UPI00189AE5FE	403.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1359253_42	1280689.AUJC01000011_gene1521	373.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1359253_42	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1359253_42	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1359253_42	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1359253_42	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1359253_43	phrog_5223	41.1	0.000000000022	neck protein	connector
UniRef90	UHGV-1359253_43	UniRef90_UPI000BEC4770	54.7	0.000000117	head-tail connector protein	N/A
PHROG	UHGV-1359253_44	phrog_1951	75.0	7.5e-22	head-tail adaptor	connector
UniRef90	UHGV-1359253_44	UniRef90_UPI001B02B074	64.3	0.0000000000259	phage head closure protein	N/A
eggNOG-mapper	UHGV-1359253_44	1094508.Tsac_2422	53.1	0.000000113	Phage head-tail joining protein	N/A
Pfam	UHGV-1359253_44	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-1359253_44	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-1359253_44	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1359253_44	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1359253_45	1487921.DP68_11350	58.2	0.00000000157	N/A	N/A
structural_annotation	UHGV-1359253_45	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1359253_46	phrog_5	41.8	0.000000000022	tail completion or Neck1 protein	connector
structural_annotation	UHGV-1359253_46	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1359253_47	phrog_88	85.5	6.2e-25	major tail protein	tail
UniRef90	UHGV-1359253_47	UniRef90_S0FUN2	113.0	3.74e-28	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1359253_47	1195236.CTER_5106	113.0	6.27e-29	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1359253_47	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-1359253_47	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1359253_47	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1359253_48	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1359253_49	phrog_33680	144.0	9.09443e-43	N/A	unknown function
UniRef90	UHGV-1359253_49	UniRef90_UPI00098F054B	176.0	1.19951e-42	phage tail protein	N/A
eggNOG-mapper	UHGV-1359253_49	1195236.CTER_5104	178.0	2.8026e-45	nuclear chromosome segregation	N/A
COG	UHGV-1359253_49	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1359253_49	TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1359253_50	phrog_37549	74.5	2.3e-23	virion structural protein	head and packaging
UniRef90	UHGV-1359253_50	UniRef90_A0A3D0W045	241.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-1359253_50	1195236.CTER_5103	125.0	2.43e-27	N/A	N/A
structural_annotation	UHGV-1359253_50	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1359253_51	phrog_26795	131.5	2.6e-39	N/A	unknown function
UniRef90	UHGV-1359253_51	UniRef90_A0A5J6T4K8	136.0	4.21e-33	Minor tail protein	N/A
eggNOG-mapper	UHGV-1359253_51	1195236.CTER_5102	147.0	4.37e-38	N/A	N/A
structural_annotation	UHGV-1359253_51	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1359253_52	PF18614,MF_00085,NF003076	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1359253_53	PF10651	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1359253_54	411471.SUBVAR_06929	311.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-1359253_54	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
eggNOG-mapper	UHGV-1359253_55	1519439.JPJG01000060_gene1892	66.2	0.0000000000288	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-1359253_55	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
eggNOG-mapper	UHGV-1359253_57	1519439.JPJG01000060_gene1895	130.0	9.68e-36	N/A	N/A
structural_annotation	UHGV-1359253_57	PF10618	N/A	N/A	N/A	N/A
PHROG	UHGV-1359253_59	phrog_937	44.4	0.0000000000031	hemolysin	other
eggNOG-mapper	UHGV-1359253_59	1519439.JPJG01000023_gene533	52.4	0.000000168	N/A	N/A
PHROG	UHGV-1359253_60	phrog_443	59.9	7.1e-17	holin	lysis
UniRef90	UHGV-1359253_60	UniRef90_A0A4R1QPE5	93.2	1.07e-23	Phage r1t holin	N/A
eggNOG-mapper	UHGV-1359253_60	1469948.JPNB01000002_gene3855	93.2	1.8e-24	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1359253_60	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1359253_60	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-1359253_61	K01447	90.1	3.7e-26	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1359253_61	phrog_670	115.0	9.5e-34	endolysin	lysis
UniRef90	UHGV-1359253_61	UniRef90_UPI0019D3CF8A	114.0	1.62e-27	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1359253_61	879308.HMPREF9130_1251	69.3	0.0000000000208	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1359253_61	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1359253_61	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-1359253_61	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-1359253_62	phrog_25567	44.8	0.0000000000016	N/A	unknown function
UniRef90	UHGV-1359253_62	UniRef90_UPI00164AED9E	90.5	2.62e-21	helix-turn-helix domain-containing protein	N/A
COG	UHGV-1359253_62	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-1359253_62	PF13560,NF040522,COG2944	N/A	N/A	N/A	N/A