UHGV-1359281 (vOTU-006579)

Viral Genome: UHGV-1359281

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1359281
vOTU ID	vOTU-006579
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0278938
Associated BioSample	SAMEA3951644
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9812
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.15
Jumbo phage	No

Genome content
Genome length (bp)	41,994
GC content	54.08%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	69
CDS density	91%
Average CDS length (bps)	553.96
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1359281_1	K13884	50.3	0.000000000000023	MARCO; macrophage receptor with collagenous structure	N/A
PHROG	UHGV-1359281_1	phrog_4433	170.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1359281_1	33035.JPJF01000122_gene2458	93.6	1.98e-19	regulation of DNA-templated transcription, elongation	N/A
Pfam	UHGV-1359281_1	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1359281_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1359281_1	NF000066	N/A	N/A	N/A	N/A
PHROG	UHGV-1359281_2	phrog_373	202.3	0	anti-repressor	transcription regulation
UniRef90	UHGV-1359281_2	UniRef90_UPI001C039A6C	392.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-1359281_2	1027292.HMPREF9372_3403	163.0	0	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-1359281_2	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-1359281_2	PF10552	N/A	N/A	ORF6C domain	ORF6C
NCBIFam	UHGV-1359281_2	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-1359281_2	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-1359281_2	PF03374,PF09669,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
UniRef90	UHGV-1359281_5	UniRef90_A0A1C7FQD9	80.1	2.38e-18	Transcriptional regulator	N/A
Pfam	UHGV-1359281_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1359281_5	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1359281_6	phrog_8	49.3	0.00000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-1359281_6	UniRef90_A0A1V0QCF9	82.8	3.27e-18	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1359281_6	913865.DOT_5671	48.9	0.00000782	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1359281_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1359281_6	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1359281_6	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1359281_7	PF09202,MF_01819,NF041230,COG1321	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1359281_10	748224.HMPREF9436_01443	325.0	0	vancomycin resistance protein	N/A
COG	UHGV-1359281_10	COG2720	N/A	N/A	Vancomycin resistance protein YoaR (function unknown), contains peptidoglycan-binding and VanW domains	N/A
UniRef90	UHGV-1359281_12	UniRef90_A0A6N7TLT0	335.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1359281_12	266265.Bxe_A3948	52.4	0.000000941	Helix-turn-helix domain	N/A
Pfam	UHGV-1359281_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1359281_12	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1359281_12	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1359281_13	K14059	144.9	9.30462e-43	int; integrase	N/A
PHROG	UHGV-1359281_13	phrog_1	166.5	0	integrase	integration and excision
UniRef90	UHGV-1359281_13	UniRef90_A0A6N7TNQ4	740.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1359281_13	411471.SUBVAR_05137	266.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1359281_13	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1359281_13	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1359281_13	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1359281_15	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-1359281_16	phrog_20016	199.8	0	N/A	unknown function
UniRef90	UHGV-1359281_16	UniRef90_A0A285PT46	208.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1359281_16	1226322.HMPREF1545_00077	179.0	0	N/A	N/A
structural_annotation	UHGV-1359281_16	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1359281_18	phrog_16490	198.8	0	N/A	unknown function
eggNOG-mapper	UHGV-1359281_18	397290.C810_01328	126.0	1.4e-31	N/A	N/A
PHROG	UHGV-1359281_19	phrog_22984	70.3	2.6e-20	N/A	unknown function
PHROG	UHGV-1359281_20	phrog_21718	89.0	5.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-1359281_20	397290.C810_05210	80.1	8.11e-17	N/A	N/A
PHROG	UHGV-1359281_21	phrog_3754	90.6	1.5e-26	N/A	unknown function
eggNOG-mapper	UHGV-1359281_21	1485543.JMME01000025_gene2462	104.0	9.78e-28	N/A	N/A
eggNOG-mapper	UHGV-1359281_23	1235798.C817_04600	56.6	0.00000000625	N/A	N/A
structural_annotation	UHGV-1359281_23	PF13560,NF040522	N/A	N/A	N/A	N/A
PHROG	UHGV-1359281_24	phrog_99	55.5	9e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1359281_24	UniRef90_A0A0K9N8D8	89.7	4.26e-18	Putative AP2 domain protein	N/A
eggNOG-mapper	UHGV-1359281_24	742740.HMPREF9474_00071	86.7	9.97e-18	N/A	N/A
Pfam	UHGV-1359281_24	PF00847	N/A	N/A	AP2 domain	AP2
structural_annotation	UHGV-1359281_24	PF18337,PF00847	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1359281_25	PF07374,MF_00245,NF001072,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-1359281_28	K24213	65.0	1.1e-18	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-1359281_28	phrog_5073	69.9	2.4e-20	tail fiber protein	tail
eggNOG-mapper	UHGV-1359281_28	411483.FAEPRAA2165_00757	165.0	1.70958e-42	N/A	N/A
Pfam	UHGV-1359281_28	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-1359281_29	phrog_15303	119.1	2e-35	N/A	unknown function
PHROG	UHGV-1359281_30	phrog_1863	79.1	2.7e-23	N/A	unknown function
eggNOG-mapper	UHGV-1359281_30	718252.FP2_04900	141.0	6.05361e-43	N/A	N/A
KOfam	UHGV-1359281_31	K07273	169.1	0	acm; lysozyme	N/A
PHROG	UHGV-1359281_31	phrog_291	140.3	1.70006e-41	endolysin	lysis
UniRef90	UHGV-1359281_31	UniRef90_E2ZES5	291.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-1359281_31	748224.HMPREF9436_00154	291.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1359281_31	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1359281_31	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1359281_31	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1359281_32	phrog_2310	59.2	3.8e-17	N/A	unknown function
eggNOG-mapper	UHGV-1359281_33	657322.FPR_13530	62.8	0.0000000639	domain, Protein	N/A
COG	UHGV-1359281_33	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-1359281_34	phrog_3558	219.8	0	tail protein	tail
UniRef90	UHGV-1359281_34	UniRef90_UPI001C01D15B	160.0	1.5e-38	phage tail protein	N/A
eggNOG-mapper	UHGV-1359281_34	1235799.C818_04233	102.0	2.24e-20	Prophage endopeptidase tail	N/A
Pfam	UHGV-1359281_34	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-1359281_34	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1359281_34	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1359281_35	phrog_33	44.2	0.0000000000036	distal tail protein Dit	tail
UniRef90	UHGV-1359281_35	UniRef90_A0A417QGC1	124.0	2.47e-31	MtfA protein	N/A
eggNOG-mapper	UHGV-1359281_35	1235792.C808_00094	114.0	7.88e-28	phage tail	N/A
COG	UHGV-1359281_35	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1359281_35	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1359281_36	phrog_28775	124.4	8.60001e-40	tail length tape measure protein	tail
UniRef90	UHGV-1359281_36	UniRef90_A0A6N7TLD3	990.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-1359281_36	1216932.CM240_0683	127.0	3.34e-27	tape measure	N/A
Pfam	UHGV-1359281_36	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1359281_36	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1359281_36	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1359281_36	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1359281_39	phrog_885	64.8	1.1e-18	major tail protein	tail
eggNOG-mapper	UHGV-1359281_39	1111121.HMPREF1247_0789	158.0	0	N/A	N/A
structural_annotation	UHGV-1359281_39	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1359281_40	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-1359281_41	phrog_17977	42.9	0.000000000007	N/A	unknown function
UniRef90	UHGV-1359281_41	UniRef90_A0A844DHJ8	117.0	9.35e-32	Phage head closure protein	N/A
structural_annotation	UHGV-1359281_41	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1359281_43	phrog_544	145.8	3.09687e-43	major head protein	head and packaging
UniRef90	UHGV-1359281_43	UniRef90_R0BKA1	426.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1359281_43	476272.RUMHYD_01776	317.0	0	N/A	N/A
structural_annotation	UHGV-1359281_43	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1359281_44	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1359281_46	phrog_5	51.7	0.000000000000022	tail completion or Neck1 protein	connector
UniRef90	UHGV-1359281_46	UniRef90_A0A6N7TNP6	301.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1359281_46	1123309.AQYB01000018_gene814	96.3	1.76e-23	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1359281_46	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1359281_46	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1359281_48	phrog_2468	80.4	1.7e-23	head morphogenesis	head and packaging
UniRef90	UHGV-1359281_48	UniRef90_A0A6N7TLR7	600.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1359281_48	1504822.CCNO01000013_gene286	114.0	7.24e-25	cell adhesion	N/A
Pfam	UHGV-1359281_48	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1359281_48	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1359281_48	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1359281_49	phrog_64	120.9	5.5e-36	portal protein	head and packaging
UniRef90	UHGV-1359281_49	UniRef90_A0A6N7TNT3	818.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1359281_49	1042156.CXIVA_01850	81.3	0.000000000000143	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1359281_49	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1359281_49	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-1359281_50	K06909	142.9	2.79979e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1359281_50	phrog_10250	175.0	0	N/A	unknown function
UniRef90	UHGV-1359281_50	UniRef90_A0A844D8I4	843.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1359281_50	411490.ANACAC_00783	489.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1359281_50	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1359281_50	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1359281_50	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1359281_50	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1359281_50	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-1359281_51	UniRef90_A0A414AGA1	104.0	1.24e-25	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1359281_51	1235790.C805_00037	104.0	2.67e-26	N/A	N/A
structural_annotation	UHGV-1359281_51	PF04218	N/A	N/A	N/A	N/A
PHROG	UHGV-1359281_52	phrog_36	68.9	8.3e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-1359281_52	UniRef90_A0A6N7TNN9	277.0	0	N/A	N/A
eggNOG-mapper	UHGV-1359281_52	748224.HMPREF9436_01463	79.7	5.69e-17	N/A	N/A
Pfam	UHGV-1359281_52	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-1359281_52	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-1359281_54	K01160	58.5	2.2e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1359281_54	phrog_34	58.5	1.4e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1359281_54	UniRef90_A0A6N7TND6	220.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1359281_54	875454.BAEW01000002_gene491	135.0	2.66e-39	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1359281_54	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1359281_54	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1359281_54	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
Pfam	UHGV-1359281_55	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1359281_55	PF20331,COG5264	N/A	N/A	N/A	N/A
PHROG	UHGV-1359281_56	phrog_3136	115.7	1.8e-34	N/A	unknown function
UniRef90	UHGV-1359281_56	UniRef90_A0A6N7TMC2	223.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1359281_56	1235793.C809_02645	57.0	0.000000343	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1359281_56	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1359281_56	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1359281_57	phrog_757	225.3	0	DNA methyltransferase	other
UniRef90	UHGV-1359281_57	UniRef90_A0A3E2U1Y9	223.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1359281_57	748224.HMPREF9436_03069	229.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1359281_57	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1359281_57	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1359281_59	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1359281_60	phrog_15768	130.5	1.4e-38	N/A	unknown function
UniRef90	UHGV-1359281_60	UniRef90_A0A844D5V0	186.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-1359281_60	748224.HMPREF9436_03357	132.0	4.58e-35	N/A	N/A
Pfam	UHGV-1359281_60	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1359281_60	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1359281_61	K03111	141.1	1.19993e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1359281_61	phrog_44	144.3	6.19374e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1359281_61	UniRef90_UPI001C00AA91	218.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1359281_61	718252.FP2_06770	208.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1359281_61	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1359281_61	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1359281_61	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1359281_61	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1359281_61	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1359281_62	phrog_561	125.0	6.2e-37	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1359281_62	UniRef90_A0A1G8PW75	149.0	4.96999e-41	RecT family protein	N/A
eggNOG-mapper	UHGV-1359281_62	563192.HMPREF0179_00147	154.0	1.00053e-42	N/A	N/A
structural_annotation	UHGV-1359281_62	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1359281_64	PF14120	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1359281_66	PF09537	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1359281_67	PF12270,NF040944	N/A	N/A	N/A	N/A
PHROG	UHGV-1359281_69	phrog_27197	86.7	2.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-1359281_69	394503.Ccel_3068	59.3	0.00000000258	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1359281_69	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1359281_69	NF007410	N/A	N/A	N/A	N/A