UHGV-1359934 (vOTU-045008)

Viral Genome: UHGV-1359934

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1359934
vOTU ID	vOTU-045008
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0276054
Associated BioSample	SAMEA2148412
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9831
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.78
Jumbo phage	No

Genome content
Genome length (bp)	41,382
GC content	57.57%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	63
CDS density	92%
Average CDS length (bps)	605.48
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1359934_1	693746.OBV_23800	240.0	0	N/A	N/A
eggNOG-mapper	UHGV-1359934_2	1410650.JHWL01000003_gene2815	65.9	0.0000000034	N/A	N/A
UniRef90	UHGV-1359934_3	UniRef90_A0A8D9UGT1	136.0	1.88e-39	Sigma C capsid protein	N/A
PHROG	UHGV-1359934_4	phrog_511	221.5	0	internal virion protein	head and packaging
UniRef90	UHGV-1359934_4	UniRef90_A0A8D9UH72	951.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-1359934_4	1226322.HMPREF1545_00785	308.0	0	N/A	N/A
structural_annotation	UHGV-1359934_4	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-1359934_5	phrog_12105	89.0	7.7e-27	N/A	unknown function
eggNOG-mapper	UHGV-1359934_5	1519439.JPJG01000060_gene1891	59.3	0.00000000113	N/A	N/A
PHROG	UHGV-1359934_6	phrog_435	57.8	2.2e-16	endolysin	lysis
UniRef90	UHGV-1359934_6	UniRef90_A0A8D9PDX2	366.0	0	MurNAc-LAA protein	N/A
eggNOG-mapper	UHGV-1359934_6	1226322.HMPREF1545_01953	84.3	9.53e-17	N-acetylmuramoyl-L-alanine amidase	N/A
COG	UHGV-1359934_6	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1359934_6	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-1359934_7	phrog_881	92.0	3e-27	holin	lysis
UniRef90	UHGV-1359934_7	UniRef90_A0A8D9PDR9	100.0	1.63e-26	Holin	N/A
eggNOG-mapper	UHGV-1359934_7	742740.HMPREF9474_02251	85.5	3.24e-21	Putative phage holin Dp-1	N/A
Pfam	UHGV-1359934_7	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-1359934_7	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-1359934_8	phrog_4105	102.6	2.2e-30	N/A	unknown function
UniRef90	UHGV-1359934_8	UniRef90_A0A8D9UHA9	204.0	0	Holin protein	N/A
eggNOG-mapper	UHGV-1359934_8	411460.RUMTOR_01326	139.0	9.54004e-42	N/A	N/A
UniRef90	UHGV-1359934_11	UniRef90_A0A1Q6L5M2	68.2	0.00000000263	N/A	N/A
COG	UHGV-1359934_11	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-1359934_11	PF19789	N/A	N/A	N/A	N/A
KOfam	UHGV-1359934_12	K08131	57.6	5.3e-17	COL9A; collagen type IX alpha	N/A
PHROG	UHGV-1359934_12	phrog_1419	71.8	6.8e-21	tail protein	tail
UniRef90	UHGV-1359934_12	UniRef90_A0A8D9PDI4	741.0	0	Collagen I alpha 1	N/A
eggNOG-mapper	UHGV-1359934_12	1203606.HMPREF1526_02029	75.5	0.0000000000227	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-1359934_12	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1359934_12	COG1409	N/A	N/A	3',5'-cyclic AMP phosphodiesterase CpdA	N/A
structural_annotation	UHGV-1359934_12	PF10651,NF033814,COG3470	N/A	N/A	N/A	N/A
PHROG	UHGV-1359934_13	phrog_15239	85.3	3.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-1359934_13	1449126.JQKL01000003_gene1694	49.7	0.0000098	N/A	N/A
PHROG	UHGV-1359934_14	phrog_1357	259.5	0	major head protein	head and packaging
UniRef90	UHGV-1359934_14	UniRef90_A0A8D9UH64	800.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-1359934_14	1449126.JQKL01000003_gene1695	454.0	0	N/A	N/A
Pfam	UHGV-1359934_14	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1359934_14	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1359934_14	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1359934_15	phrog_13908	309.4	0	N/A	unknown function
UniRef90	UHGV-1359934_15	UniRef90_A0A844DRV7	119.0	7.17e-27	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-1359934_15	1410650.JHWL01000003_gene2831	125.0	7.09e-31	N/A	N/A
UniRef90	UHGV-1359934_16	UniRef90_A0A8D9PDR6	194.0	0	YsxB-like protein	N/A
Pfam	UHGV-1359934_16	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-1359934_16	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1359934_17	phrog_156	328.0	0	portal protein	head and packaging
UniRef90	UHGV-1359934_17	UniRef90_A0A8D9UH10	1245.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1359934_17	748224.HMPREF9436_01396	538.0	0	N/A	N/A
structural_annotation	UHGV-1359934_17	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-1359934_18	K06909	102.5	5.5e-30	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1359934_18	phrog_979	144.5	1.68156e-44	terminase large subunit	head and packaging
UniRef90	UHGV-1359934_18	UniRef90_A0A8D9PDR5	931.0	0	Large subunit terminase	N/A
eggNOG-mapper	UHGV-1359934_18	1203606.HMPREF1526_02750	550.0	0	N/A	N/A
Pfam	UHGV-1359934_18	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1359934_18	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1359934_18	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1359934_19	phrog_59	125.1	3.4e-37	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1359934_19	UniRef90_UPI000B958BE5	103.0	5.64e-25	NUMOD4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1359934_19	1121097.JCM15093_2508	99.0	7.93e-24	HNH endonuclease domain protein	N/A
PADLOC	UHGV-1359934_19	HEase_00016	104.4	1.8e-30	homing endonuclease	RM
Pfam	UHGV-1359934_19	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-1359934_19	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1359934_19	PF07453,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-1359934_20	phrog_606	86.4	3.2e-25	terminase small subunit	head and packaging
UniRef90	UHGV-1359934_20	UniRef90_UPI00195648BB	182.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1359934_20	445972.ANACOL_01838	147.0	1.52742e-43	DNA-packaging protein gp3	N/A
Pfam	UHGV-1359934_20	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1359934_20	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1359934_21	K22299	47.6	0.0000000000004	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1359934_21	phrog_8	63.7	4.1e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1359934_21	UniRef90_A0A8D9PDC4	150.0	0	Repressor protein	N/A
eggNOG-mapper	UHGV-1359934_21	1226322.HMPREF1545_00039	77.0	9.73e-18	sequence-specific DNA binding	N/A
Pfam	UHGV-1359934_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1359934_21	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1359934_21	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1359934_22	PF06003,MF_01354,TIGR00739,COG5475	N/A	N/A	N/A	N/A
UniRef90	UHGV-1359934_27	UniRef90_UPI001F2DACFB	54.7	0.00000027	zinc ribbon domain-containing protein	N/A
PHROG	UHGV-1359934_28	phrog_38832	69.6	8.3e-28	N/A	unknown function
eggNOG-mapper	UHGV-1359934_28	665956.HMPREF1032_03087	82.8	3.74e-18	N/A	N/A
structural_annotation	UHGV-1359934_28	PF11717,TIGR02450	N/A	N/A	N/A	N/A
UniRef90	UHGV-1359934_31	UniRef90_A0A8D9PDK1	206.0	0	Anti-repressor	N/A
KOfam	UHGV-1359934_34	K00390	51.2	0.0000000000000053	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1359934_34	phrog_424	120.8	1e-35	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1359934_34	UniRef90_A0A1H7KWC5	307.0	0	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	N/A
eggNOG-mapper	UHGV-1359934_34	665956.HMPREF1032_00140	277.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-1359934_34	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1359934_34	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1359934_34	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-1359934_35	phrog_190	97.6	1.1e-28	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1359934_35	UniRef90_A0A8D9PDD6	238.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-1359934_35	862517.HMPREF9225_1657	74.3	0.00000000000000326	N/A	N/A
Pfam	UHGV-1359934_35	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1359934_35	PF06356	N/A	N/A	N/A	N/A
UniRef90	UHGV-1359934_37	UniRef90_A0A8D9PDS1	53.9	0.00000107	Replisome organizer	N/A
structural_annotation	UHGV-1359934_37	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1359934_38	phrog_15768	45.3	0.0000000000016	N/A	unknown function
UniRef90	UHGV-1359934_38	UniRef90_UPI0019563B2C	77.4	1.38e-16	N/A	N/A
eggNOG-mapper	UHGV-1359934_38	1121344.JHZO01000003_gene982	58.2	0.00000000435	N/A	N/A
Pfam	UHGV-1359934_38	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1359934_38	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1359934_40	K03111	125.7	5.8e-37	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1359934_40	phrog_44	124.1	1.2e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1359934_40	UniRef90_A0A8D9PDS7	229.0	0	Single strand binding protein	N/A
eggNOG-mapper	UHGV-1359934_40	1203606.HMPREF1526_01880	123.0	2.8e-34	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1359934_40	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1359934_40	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1359934_40	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1359934_40	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1359934_40	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1359934_41	phrog_7566	92.7	2.4e-27	N/A	unknown function
UniRef90	UHGV-1359934_41	UniRef90_A0A8D9UHC0	141.0	5.9303e-42	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-1359934_41	1007096.BAGW01000031_gene114	136.0	1.8e-40	N/A	N/A
PHROG	UHGV-1359934_43	phrog_72	52.9	0.0000000000000031	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1359934_43	UniRef90_A0A8D9PDS2	362.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-1359934_43	445972.ANACOL_01825	130.0	5.71e-36	N/A	N/A
structural_annotation	UHGV-1359934_43	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1359934_44	phrog_155	146.5	1.69557e-43	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1359934_44	UniRef90_UPI001C126E67	198.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-1359934_44	559189.B6SBX8_9CAUD	172.0	0	ERF superfamily	N/A
Pfam	UHGV-1359934_44	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1359934_44	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1359934_45	phrog_253	87.7	1.5e-25	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1359934_45	UniRef90_A0A8D9PDS3	313.0	0	Resistance protein	N/A
eggNOG-mapper	UHGV-1359934_45	748224.HMPREF9436_03356	106.0	4.62e-27	Siphovirus Gp157	N/A
Pfam	UHGV-1359934_45	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1359934_45	PF05565	N/A	N/A	N/A	N/A
UniRef90	UHGV-1359934_47	UniRef90_A0A8D9UH91	313.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1359934_47	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-1359934_47	PF01381,PF21715,NF041951,TIGR04176,COG1476,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-1359934_49	phrog_22529	48.8	0.000000000000084	N/A	unknown function
UniRef90	UHGV-1359934_49	UniRef90_A0A8D9UHA1	312.0	0	3D containing protein	N/A
eggNOG-mapper	UHGV-1359934_49	658088.HMPREF0987_02675	66.2	0.00000000015	peptidase	N/A
Pfam	UHGV-1359934_49	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-1359934_49	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-1359934_49	COG3584	N/A	N/A	N/A	N/A
UniRef90	UHGV-1359934_51	UniRef90_A0A8D9PDM8	113.0	1.14e-31	Pyocin activator protein	N/A
UniRef90	UHGV-1359934_52	UniRef90_UPI001C38B35F	52.4	0.0000002	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1359934_52	558169.AGAV01000008_gene736	46.2	0.00000894	N/A	N/A
Pfam	UHGV-1359934_52	PF05339	N/A	N/A	N/A	DUF739
structural_annotation	UHGV-1359934_52	PF21291,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1359934_53	K07727	43.1	0.00000000001	K07727; putative transcriptional regulator	N/A
eggNOG-mapper	UHGV-1359934_53	658659.HMPREF0983_03304	60.8	0.000000000752	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1359934_53	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1359934_53	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-1359934_55	UniRef90_A0A8D9UHA6	270.0	0	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-1359934_55	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1359934_55	PF12844,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1359934_56	K14059	152.1	5.60519e-45	int; integrase	N/A
PHROG	UHGV-1359934_56	phrog_1	165.6	0	integrase	integration and excision
UniRef90	UHGV-1359934_56	UniRef90_A0A8D9UGU2	693.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1359934_56	693746.OBV_41260	284.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1359934_56	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1359934_56	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1359934_56	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1359934_57	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-1359934_58	phrog_20016	185.4	0	N/A	unknown function
UniRef90	UHGV-1359934_58	UniRef90_A0A285PT46	188.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1359934_58	1226322.HMPREF1545_00077	168.0	0	N/A	N/A
structural_annotation	UHGV-1359934_58	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1359934_59	phrog_16490	113.8	6.6e-34	N/A	unknown function
eggNOG-mapper	UHGV-1359934_59	1408437.JNJN01000043_gene803	172.0	0	N/A	N/A
PHROG	UHGV-1359934_60	phrog_22984	76.2	3.7e-22	N/A	unknown function
PHROG	UHGV-1359934_61	phrog_21718	100.9	1.2e-29	N/A	unknown function
eggNOG-mapper	UHGV-1359934_61	397290.C810_05210	68.6	0.00000000000178	N/A	N/A
PHROG	UHGV-1359934_62	phrog_3754	96.6	2.5e-28	N/A	unknown function
eggNOG-mapper	UHGV-1359934_62	476272.RUMHYD_01764	162.0	0	N/A	N/A
PHROG	UHGV-1359934_63	phrog_22978	837.7	0	N/A	unknown function
eggNOG-mapper	UHGV-1359934_63	1410650.JHWL01000003_gene2814	283.0	0	N/A	N/A