UHGV-1359997 (vOTU-090049)

Viral Genome: UHGV-1359997

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1359997
vOTU ID	vOTU-090049
Representative Genome?	Yes
Source	GVD
Original genome ID	Zuo_2017_SRR5677796_NODE_55_length_33777_cov_17.613072
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.58 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9808
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.88
Jumbo phage	No

Genome content
Genome length (bp)	33,777
GC content	48.01%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	91%
Average CDS length (bps)	588.12
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 81.58)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1359997_1	phrog_87	61.5	1.2e-17	metallo-protease	other
UniRef90	UHGV-1359997_1	UniRef90_A0A1I0JAG9	167.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-1359997_1	1235802.C823_04751	91.3	2.54e-22	IrrE N-terminal-like domain	N/A
Pfam	UHGV-1359997_1	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1359997_1	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
UniRef90	UHGV-1359997_2	UniRef90_UPI001C02AC42	212.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1359997_2	1123263.AUKY01000072_gene2115	166.0	0	N/A	N/A
structural_annotation	UHGV-1359997_2	PF13424,TIGR01641	N/A	N/A	N/A	N/A
KOfam	UHGV-1359997_3	K14059	84.8	1.4e-24	int; integrase	N/A
PHROG	UHGV-1359997_3	phrog_1	108.2	9.3e-32	integrase	integration and excision
UniRef90	UHGV-1359997_3	UniRef90_N9YSK7	431.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1359997_3	1235792.C808_05256	373.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1359997_3	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1359997_3	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1359997_3	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1359997_5	K07727	57.2	5e-16	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-1359997_5	UniRef90_UPI0012D8A0BE	118.0	1.96e-33	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1359997_5	742735.HMPREF9467_01735	90.5	3.09e-23	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1359997_5	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1359997_5	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1359997_5	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1359997_6	1274374.CBLK010000055_gene42	50.4	0.000000629	N/A	N/A
Pfam	UHGV-1359997_6	PF20648	N/A	N/A	N/A	DUF6809
structural_annotation	UHGV-1359997_6	PF20648	N/A	N/A	N/A	N/A
KOfam	UHGV-1359997_7	K14059	195.4	0	int; integrase	N/A
PHROG	UHGV-1359997_7	phrog_1	183.4	0	integrase	integration and excision
UniRef90	UHGV-1359997_7	UniRef90_A0A413VL55	372.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1359997_7	1487921.DP68_08665	109.0	1.6e-24	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1359997_7	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1359997_7	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1359997_7	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1359997_7	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1359997_11	UniRef90_A0A832PWY5	60.8	0.0000000000569	Cag pathogenicity island protein	N/A
Pfam	UHGV-1359997_11	PF19807	N/A	N/A	N/A	DUF6290
structural_annotation	UHGV-1359997_11	PF03869,NF008671,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-1359997_15	phrog_99	65.3	8.6e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1359997_15	UniRef90_C0CV75	508.0	0	AP2 domain protein	N/A
eggNOG-mapper	UHGV-1359997_15	246199.CUS_5638	123.0	4.72e-32	N/A	N/A
Pfam	UHGV-1359997_15	PF00847	N/A	N/A	AP2 domain	AP2
structural_annotation	UHGV-1359997_15	PF18337,PF00847	N/A	N/A	N/A	N/A
PHROG	UHGV-1359997_16	phrog_38078	91.7	1.1e-39	N/A	unknown function
UniRef90	UHGV-1359997_16	UniRef90_C0D8J4	553.0	0	Cell wall-binding repeat protein	N/A
eggNOG-mapper	UHGV-1359997_16	1298920.KI911353_gene4832	390.0	0	Peptidoglycan-binding domain 1 protein	N/A
Pfam	UHGV-1359997_16	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-1359997_16	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
COG	UHGV-1359997_16	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-1359997_16	PF00877,PF19127,TIGR02594,TIGR04035,COG3738	N/A	N/A	N/A	N/A
PHROG	UHGV-1359997_17	phrog_199	59.4	4.2e-17	holin	lysis
UniRef90	UHGV-1359997_17	UniRef90_C0D6W0	278.0	0	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-1359997_17	610130.Closa_1414	212.0	0	toxin secretion phage lysis holin	N/A
Pfam	UHGV-1359997_17	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1359997_17	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1359997_17	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1359997_17	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
NCBIFam	UHGV-1359997_18	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-1359997_18	NF040910	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1359997_19	742740.HMPREF9474_04291	142.0	7.19987e-42	N/A	N/A
eggNOG-mapper	UHGV-1359997_20	742735.HMPREF9467_00180	48.1	0.000000954	N/A	N/A
COG	UHGV-1359997_22	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
eggNOG-mapper	UHGV-1359997_23	1298920.KI911353_gene541	59.3	0.000000126	ATPase involved in DNA repair	N/A
COG	UHGV-1359997_23	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
structural_annotation	UHGV-1359997_23	PF07675,NF038128	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1359997_24	1298920.KI911353_gene541	52.8	0.00000229	ATPase involved in DNA repair	N/A
COG	UHGV-1359997_24	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
eggNOG-mapper	UHGV-1359997_25	1304866.K413DRAFT_0769	80.9	3.71e-17	N/A	N/A
eggNOG-mapper	UHGV-1359997_26	411902.CLOBOL_00123	111.0	1.67e-29	N/A	N/A
PHROG	UHGV-1359997_27	phrog_32744	170.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1359997_27	411902.CLOBOL_00124	461.0	0	N/A	N/A
structural_annotation	UHGV-1359997_27	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-1359997_28	phrog_1194	51.8	0.000000000000013	N/A	unknown function
eggNOG-mapper	UHGV-1359997_28	1120998.AUFC01000030_gene2246	102.0	4.75e-25	N/A	N/A
structural_annotation	UHGV-1359997_28	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1359997_29	phrog_37543	1290.1	0	N/A	unknown function
UniRef90	UHGV-1359997_29	UniRef90_UPI001DBC5439	382.0	0	PspA/IM30 family protein	N/A
eggNOG-mapper	UHGV-1359997_29	411902.CLOBOL_00126	191.0	0	N/A	N/A
COG	UHGV-1359997_29	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1359997_29	PF11177,PF09486,TIGR02559,COG3237,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-1359997_30	phrog_706	144.0	8.00141e-43	N/A	unknown function
UniRef90	UHGV-1359997_30	UniRef90_A0A1I0K8S4	374.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1359997_30	411902.CLOBOL_00127	258.0	0	N/A	N/A
Pfam	UHGV-1359997_30	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1359997_30	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1359997_31	phrog_11299	97.8	1.1e-28	N/A	unknown function
eggNOG-mapper	UHGV-1359997_31	1298920.KI911353_gene2067	131.0	3.55e-37	N/A	N/A
PHROG	UHGV-1359997_32	phrog_3099	173.0	0	N/A	unknown function
UniRef90	UHGV-1359997_32	UniRef90_A0A7M3SAI1	201.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1359997_32	411902.CLOBOL_00129	250.0	0	N/A	N/A
structural_annotation	UHGV-1359997_32	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1359997_33	phrog_3266	125.8	1.9e-37	tail completion	connector
eggNOG-mapper	UHGV-1359997_33	411902.CLOBOL_00130	222.0	0	N/A	N/A
structural_annotation	UHGV-1359997_33	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1359997_34	phrog_556	85.4	2.9e-25	minor head protein	head and packaging
UniRef90	UHGV-1359997_34	UniRef90_A0A174E6U4	239.0	0	Minor capsid	N/A
eggNOG-mapper	UHGV-1359997_34	411902.CLOBOL_00131	239.0	0	Minor capsid protein	N/A
Pfam	UHGV-1359997_34	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1359997_34	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1359997_35	phrog_3366	74.6	1e-21	N/A	unknown function
eggNOG-mapper	UHGV-1359997_35	411902.CLOBOL_00132	194.0	0	N/A	N/A
Pfam	UHGV-1359997_35	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-1359997_35	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1359997_36	phrog_541	89.0	4.3e-26	head-tail adaptor	connector
UniRef90	UHGV-1359997_36	UniRef90_A0A371AQT0	98.6	3.4e-24	N/A	N/A
eggNOG-mapper	UHGV-1359997_36	411902.CLOBOL_00133	162.0	0	N/A	N/A
PHROG	UHGV-1359997_37	phrog_10	181.0	0	major head protein	head and packaging
UniRef90	UHGV-1359997_37	UniRef90_UPI000E438149	702.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1359997_37	411902.CLOBOL_00134	717.0	0	Phage capsid family	N/A
Pfam	UHGV-1359997_37	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1359997_37	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1359997_37	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1359997_37	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1359997_38	phrog_194	97.5	1.7e-28	head scaffolding protein	head and packaging
UniRef90	UHGV-1359997_38	UniRef90_C0CSR8	327.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-1359997_38	411902.CLOBOL_00135	293.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1359997_38	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1359997_38	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-1359997_39	phrog_581	311.7	0	minor head protein	head and packaging
UniRef90	UHGV-1359997_39	UniRef90_A0A1I0K953	744.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-1359997_39	411902.CLOBOL_00137	627.0	0	N/A	N/A
Pfam	UHGV-1359997_39	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1359997_39	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1359997_39	PF06152	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1359997_41	476272.RUMHYD_02869	76.6	3.67e-17	N/A	N/A
structural_annotation	UHGV-1359997_41	PF07703,NF038114,COG5501	N/A	N/A	N/A	N/A
PHROG	UHGV-1359997_42	phrog_32322	71.8	7.5e-21	N/A	unknown function
UniRef90	UHGV-1359997_42	UniRef90_A0A1Y4VJG2	92.0	7.16e-21	Ig-like_bact domain-containing protein	N/A
eggNOG-mapper	UHGV-1359997_42	411461.DORFOR_00725	80.9	3.23e-18	N/A	N/A
Pfam	UHGV-1359997_42	PF13754	N/A	N/A	N/A	Big_3_4
structural_annotation	UHGV-1359997_42	PF13754	N/A	N/A	N/A	N/A
KOfam	UHGV-1359997_43	K13276	63.1	2.1e-18	bpr; bacillopeptidase F [EC:3.4.21.-]	N/A
PHROG	UHGV-1359997_43	phrog_11157	278.1	0	N/A	unknown function
UniRef90	UHGV-1359997_43	UniRef90_UPI0011DD7FE9	439.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1359997_43	1304866.K413DRAFT_0771	365.0	0	N/A	N/A
Pfam	UHGV-1359997_43	PF19077	N/A	N/A	Bacterial Ig-like domain	Big_13
Pfam	UHGV-1359997_43	PF09136	N/A	N/A	Glucodextranase, domain B	Glucodextran_B
COG	UHGV-1359997_43	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
structural_annotation	UHGV-1359997_43	PF09136,PF13205,PF13754,MF_04116,NF032891,COG2372,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-1359997_44	phrog_533	426.4	0	portal protein	head and packaging
UniRef90	UHGV-1359997_44	UniRef90_C0CSR5	906.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1359997_44	411902.CLOBOL_00138	797.0	0	N/A	N/A
Pfam	UHGV-1359997_44	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1359997_44	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1359997_45	K06909	62.1	7.9e-18	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1359997_45	phrog_2	88.1	1.6e-25	terminase large subunit	head and packaging
UniRef90	UHGV-1359997_45	UniRef90_A0A352BM03	804.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1359997_45	411902.CLOBOL_00139	872.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-1359997_45	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1359997_45	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1359997_46	K07474	118.7	7.9e-35	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1359997_46	phrog_2606	349.6	0	terminase small subunit	head and packaging
UniRef90	UHGV-1359997_46	UniRef90_A0A413FI65	530.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1359997_46	478749.BRYFOR_07604	324.0	0	terminase, small subunit	N/A
Pfam	UHGV-1359997_46	PF10668	N/A	N/A	Phage terminase small subunit	Phage_terminase
Pfam	UHGV-1359997_46	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1359997_46	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1359997_46	PF03592,PF10668,NF040601,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-1359997_47	phrog_36	67.8	2e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-1359997_47	UniRef90_UPI001D089637	191.0	0	N/A	N/A
eggNOG-mapper	UHGV-1359997_47	1304866.K413DRAFT_3028	178.0	0	N/A	N/A
structural_annotation	UHGV-1359997_47	PF04545,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-1359997_48	K03733	196.4	0	xerC; integrase/recombinase XerC	N/A
PHROG	UHGV-1359997_48	phrog_1	145.2	5.70328e-43	integrase	integration and excision
UniRef90	UHGV-1359997_48	UniRef90_C0D6Y6	627.0	0	Phage integrase SAM-like domain protein	N/A
eggNOG-mapper	UHGV-1359997_48	762984.HMPREF9445_01343	227.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1359997_48	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-1359997_48	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1359997_48	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1359997_48	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-1359997_49	phrog_25231	163.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1359997_49	411902.CLOBOL_05673	52.4	0.0000000682	N/A	N/A
PHROG	UHGV-1359997_50	phrog_2316	73.3	4.1e-21	N/A	unknown function
UniRef90	UHGV-1359997_50	UniRef90_UPI000471C257	87.4	1.18e-20	N/A	N/A
eggNOG-mapper	UHGV-1359997_50	1280676.AUJO01000024_gene3262	86.7	4.72e-21	N/A	N/A
Pfam	UHGV-1359997_50	PF16475	N/A	N/A	N/A	DUF5052
structural_annotation	UHGV-1359997_50	PF16475,MF_00436,NF033216,COG1923	N/A	N/A	N/A	N/A