UHGV-1360696 (vOTU-054999)

Viral Genome: UHGV-1360696

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1360696
vOTU ID	vOTU-054999
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0275439
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.982
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.14
Jumbo phage	No

Genome content
Genome length (bp)	41,298
GC content	59.18%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	61
CDS density	96%
Average CDS length (bps)	649.48
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1360696_1	UniRef90_A0A2Z4GU98	178.0	0	Ribonuclease inhibitor	N/A
eggNOG-mapper	UHGV-1360696_1	563031.HMPREF0666_01114	80.9	9.97e-16	N/A	N/A
structural_annotation	UHGV-1360696_3	PF05082	N/A	N/A	N/A	N/A
KOfam	UHGV-1360696_6	K00390	108.9	5.5e-32	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1360696_6	phrog_424	120.3	1.1e-35	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1360696_6	UniRef90_UPI001D087498	419.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1360696_6	1408437.JNJN01000032_gene2312	327.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1360696_6	BrxP_00001	65.1	1.4e-19	BrxP	BREX
Pfam	UHGV-1360696_6	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1360696_6	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1360696_6	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
Pfam	UHGV-1360696_8	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-1360696_10	phrog_954	200.4	0	DNA methyltransferase	other
UniRef90	UHGV-1360696_10	UniRef90_A0A810Q0N4	296.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1360696_10	1280698.AUJS01000007_gene1028	275.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-1360696_10	MTase_II_00074	199.1	0	Type II methyltransferase	RM
Pfam	UHGV-1360696_10	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-1360696_10	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-1360696_10	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
PHROG	UHGV-1360696_11	phrog_4019	71.5	9.7e-21	N/A	unknown function
PHROG	UHGV-1360696_12	phrog_38832	63.6	1.1e-19	N/A	unknown function
eggNOG-mapper	UHGV-1360696_12	1232443.BAIA02000078_gene48	122.0	4.76e-34	N/A	N/A
structural_annotation	UHGV-1360696_12	PF11717,TIGR02450	N/A	N/A	N/A	N/A
PHROG	UHGV-1360696_13	phrog_31029	64.7	1.1e-18	N/A	unknown function
PHROG	UHGV-1360696_15	phrog_190	110.5	1.4e-32	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1360696_15	UniRef90_UPI0006C2AC63	129.0	3.07e-35	N/A	N/A
eggNOG-mapper	UHGV-1360696_15	693746.OBV_25250	120.0	1.15e-32	N/A	N/A
Pfam	UHGV-1360696_15	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1360696_15	PF06356	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1360696_17	PF20111,NF033202	N/A	N/A	N/A	N/A
PHROG	UHGV-1360696_18	phrog_3584	124.1	1e-36	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1360696_18	632245.CLP_2642	78.6	0.0000000000000292	N/A	N/A
structural_annotation	UHGV-1360696_18	PF21578,MF_00360	N/A	N/A	N/A	N/A
UniRef90	UHGV-1360696_19	UniRef90_A0A3D2I6C5	58.9	0.000000000345	Conjugal transfer protein	N/A
eggNOG-mapper	UHGV-1360696_19	272563.CD630_05081	59.7	0.0000000000294	Cysteine-rich KTR	N/A
Pfam	UHGV-1360696_19	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-1360696_19	PF14205	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1360696_20	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1360696_21	K06909	136.0	3.5e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1360696_21	phrog_2	125.7	5.9e-37	terminase large subunit	head and packaging
UniRef90	UHGV-1360696_21	UniRef90_A0A810Q5R0	617.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1360696_21	1410650.JHWL01000003_gene2834	569.0	0	N/A	N/A
Pfam	UHGV-1360696_21	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1360696_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1360696_21	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1360696_22	phrog_511	230.8	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1360696_22	1410650.JHWL01000003_gene2827	316.0	0	N/A	N/A
structural_annotation	UHGV-1360696_22	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-1360696_23	phrog_156	300.9	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1360696_23	1410650.JHWL01000003_gene2833	534.0	0	N/A	N/A
structural_annotation	UHGV-1360696_23	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
PHROG	UHGV-1360696_24	phrog_13908	199.6	0	N/A	unknown function
eggNOG-mapper	UHGV-1360696_24	1410650.JHWL01000003_gene2831	122.0	4.94e-30	N/A	N/A
PHROG	UHGV-1360696_25	phrog_1357	229.3	0	major head protein	head and packaging
UniRef90	UHGV-1360696_25	UniRef90_A0A2V2CFL5	398.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1360696_25	748224.HMPREF9436_02545	262.0	0	N/A	N/A
Pfam	UHGV-1360696_25	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1360696_25	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1360696_25	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1360696_26	phrog_15239	43.9	0.0000000000036	N/A	unknown function
PHROG	UHGV-1360696_27	phrog_12105	116.4	1.5e-34	N/A	unknown function
eggNOG-mapper	UHGV-1360696_27	1226322.HMPREF1545_03850	57.0	0.0000000237	N/A	N/A
eggNOG-mapper	UHGV-1360696_28	537007.BLAHAN_05255	67.4	0.00000000398	N/A	N/A
UniRef90	UHGV-1360696_30	UniRef90_R5DCX9	193.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1360696_30	1410650.JHWL01000003_gene2815	132.0	6.27e-32	N/A	N/A
eggNOG-mapper	UHGV-1360696_31	1408437.JNJN01000039_gene389	522.0	0	heme binding	N/A
COG	UHGV-1360696_31	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-1360696_32	PF01835,NF005176,COG5456	N/A	N/A	N/A	N/A
KOfam	UHGV-1360696_33	K16617	42.4	0.000000000004	COL13A; collagen type XIII alpha	N/A
PHROG	UHGV-1360696_33	phrog_819	47.1	0.00000000000018	tail protein	tail
Pfam	UHGV-1360696_33	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1360696_33	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
COG	UHGV-1360696_35	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
KOfam	UHGV-1360696_38	K03651	63.0	4.6e-18	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	N/A
PHROG	UHGV-1360696_38	phrog_7158	54.3	5.6e-17	N/A	unknown function
UniRef90	UHGV-1360696_38	UniRef90_A0A1I1Z9R5	116.0	4.36e-24	Calcineurin-like phosphoesterase	N/A
structural_annotation	UHGV-1360696_38	PF02368,PF09423,MF_00575,NF003743,NF005261,COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-1360696_39	phrog_937	53.6	0.000000000000004	hemolysin	other
eggNOG-mapper	UHGV-1360696_39	1519439.JPJG01000023_gene533	70.9	0.0000000000000105	N/A	N/A
PHROG	UHGV-1360696_41	phrog_13256	61.7	7.7e-18	N/A	unknown function
eggNOG-mapper	UHGV-1360696_41	1226322.HMPREF1545_00166	74.3	1.36e-16	N/A	N/A
KOfam	UHGV-1360696_42	K01447	121.3	1.1e-35	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1360696_42	phrog_1794	126.2	3.2e-37	amidase	lysis
UniRef90	UHGV-1360696_42	UniRef90_A0A3D4VSU2	181.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1360696_42	411470.RUMGNA_02087	158.0	4.03574e-43	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1360696_42	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1360696_42	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1360696_42	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
UniRef90	UHGV-1360696_43	UniRef90_A0A843IZ65	59.7	0.00000000029	Sigma70_r4 domain-containing protein	N/A
Pfam	UHGV-1360696_43	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
structural_annotation	UHGV-1360696_43	PF04545,MF_00245,TIGR02985,COG2739	N/A	N/A	N/A	N/A
UniRef90	UHGV-1360696_46	UniRef90_A0A7M1RSZ3	79.7	0.00000000000000152	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1360696_46	1378168.N510_03079	64.3	0.000000000369	N/A	N/A
KOfam	UHGV-1360696_47	K14059	108.2	1.4e-31	int; integrase	N/A
PHROG	UHGV-1360696_47	phrog_1	98.5	9e-29	integrase	integration and excision
UniRef90	UHGV-1360696_47	UniRef90_UPI0019205CC8	219.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1360696_47	478749.BRYFOR_05407	210.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1360696_47	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1360696_47	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1360696_47	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
COG	UHGV-1360696_48	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1360696_48	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
COG	UHGV-1360696_49	COG2374	N/A	N/A	Predicted extracellular nuclease	N/A
KOfam	UHGV-1360696_52	K22300	50.8	0.000000000000037	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1360696_52	phrog_8	42.1	0.000000000017	transcriptional regulator	transcription regulation
UniRef90	UHGV-1360696_52	UniRef90_A0A1Y4L0A2	108.0	7.21e-28	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1360696_52	748224.HMPREF9436_01444	104.0	6.72e-27	N/A	N/A
Pfam	UHGV-1360696_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1360696_52	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1360696_52	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1360696_59	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A