UHGV-1360792 (vOTU-003224)

Viral Genome: UHGV-1360792

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1360792
vOTU ID	vOTU-003224
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0279819
Associated BioSample	SAMN05415000
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9766
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.58
Jumbo phage	No

Genome content
Genome length (bp)	42,175
GC content	42.48%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	71
CDS density	94%
Average CDS length (bps)	559.52
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-1360792_1	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-1360792_2	phrog_38	343.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1360792_2	UniRef90_A0A845QMQ7	592.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1360792_2	755731.Clo1100_2438	437.0	0	TIGRFAM Phage	N/A
Pfam	UHGV-1360792_2	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1360792_2	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1360792_2	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-1360792_2	COG5362	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1360792_2	PF17289,PF05876,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-1360792_4	phrog_156	99.8	1.6e-30	portal protein	head and packaging
eggNOG-mapper	UHGV-1360792_4	1232449.BAHV02000016_gene1822	400.0	0	N/A	N/A
structural_annotation	UHGV-1360792_4	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1360792_6	phrog_267	101.2	1.1e-29	major head protein	head and packaging
UniRef90	UHGV-1360792_6	UniRef90_A0A4R3KBP0	150.0	1.48e-40	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1360792_6	665956.HMPREF1032_03906	251.0	0	P22 coat protein-protein 5 domain protein	N/A
structural_annotation	UHGV-1360792_6	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1360792_7	PF07100,COG4288	N/A	N/A	N/A	N/A
PHROG	UHGV-1360792_9	phrog_3287	97.1	1e-28	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1360792_9	1232449.BAHV02000016_gene1816	278.0	0	N/A	N/A
structural_annotation	UHGV-1360792_9	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-1360792_10	phrog_21765	43.0	0.0000000000055	N/A	unknown function
UniRef90	UHGV-1360792_10	UniRef90_A0A3R6GQJ1	63.5	0.000000498	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1360792_10	552398.HMPREF0866_01593	82.4	0.0000000000000376	tail collar domain protein	N/A
COG	UHGV-1360792_10	COG4675	N/A	N/A	Phage tail collar domain	N/A
UniRef90	UHGV-1360792_11	UniRef90_UPI001D07731B	109.0	1.12e-23	N/A	N/A
eggNOG-mapper	UHGV-1360792_11	693746.OBV_22720	160.0	1.02001e-41	cellulose 1,4-beta-cellobiosidase activity	N/A
Pfam	UHGV-1360792_11	PF07523	N/A	N/A	Bacterial Ig-like domain (group 3)	Big_3
Pfam	UHGV-1360792_11	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-1360792_11	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-1360792_11	PF19789	N/A	N/A	N/A	N/A
NCBIFam	UHGV-1360792_13	NF040910.1	N/A	N/A	CD1375 family protein	N/A
KOfam	UHGV-1360792_14	K18454	40.0	0.000000000041	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	N/A
PHROG	UHGV-1360792_14	phrog_18593	86.4	3.6e-25	N/A	unknown function
UniRef90	UHGV-1360792_14	UniRef90_A0A1C5VT90	160.0	0	Chitinase A1	N/A
eggNOG-mapper	UHGV-1360792_14	552398.HMPREF0866_03095	130.0	1.33e-36	N/A	N/A
Pfam	UHGV-1360792_14	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-1360792_14	PF14600	N/A	N/A	N/A	N/A
UniRef90	UHGV-1360792_18	UniRef90_A0A845QMU2	687.0	0	PBECR3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1360792_18	1408437.JNJN01000060_gene452	323.0	0	heme binding	N/A
COG	UHGV-1360792_18	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
PHROG	UHGV-1360792_19	phrog_4105	80.0	2.1e-23	N/A	unknown function
UniRef90	UHGV-1360792_19	UniRef90_A0A8D9UHA9	67.8	0.00000000000153	Holin protein	N/A
eggNOG-mapper	UHGV-1360792_19	428125.CLOLEP_01431	76.3	1.63e-16	N/A	N/A
PHROG	UHGV-1360792_20	phrog_443	54.0	0.0000000000000047	holin	lysis
UniRef90	UHGV-1360792_20	UniRef90_A0A1I1Y2T2	89.4	3.45e-22	Phage r1t holin	N/A
eggNOG-mapper	UHGV-1360792_20	1469948.JPNB01000002_gene3855	86.7	6.77e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1360792_20	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1360792_20	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-1360792_21	K01448	114.3	1.3e-33	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1360792_21	phrog_435	169.3	0	endolysin	lysis
UniRef90	UHGV-1360792_21	UniRef90_B0MAM2	212.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1360792_21	411490.ANACAC_00597	212.0	0	Cell wall hydrolase autolysin	N/A
Pfam	UHGV-1360792_21	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-1360792_21	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1360792_21	PF01520,PF18342,MF_00417,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A
UniRef90	UHGV-1360792_22	UniRef90_A0A350H2J1	49.3	0.00000384	HTH luxR-type domain-containing protein	N/A
structural_annotation	UHGV-1360792_22	PF13404,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1360792_23	phrog_21718	55.0	0.0000000000000014	N/A	unknown function
eggNOG-mapper	UHGV-1360792_23	476272.RUMHYD_01768	67.4	0.0000000000013	N/A	N/A
eggNOG-mapper	UHGV-1360792_25	397290.C810_01328	53.1	0.00000941	N/A	N/A
structural_annotation	UHGV-1360792_26	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1360792_27	1408437.JNJN01000043_gene801	58.9	0.0000000139	N/A	N/A
KOfam	UHGV-1360792_28	K14059	211.7	0	int; integrase	N/A
PHROG	UHGV-1360792_28	phrog_1	207.0	0	integrase	integration and excision
UniRef90	UHGV-1360792_28	UniRef90_A0A858BPV1	267.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1360792_28	397290.C810_00805	257.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1360792_28	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-1360792_28	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1360792_28	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1360792_28	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1360792_28	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
COG	UHGV-1360792_30	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
PHROG	UHGV-1360792_32	phrog_8	49.1	0.00000000000012	transcriptional regulator	transcription regulation
UniRef90	UHGV-1360792_32	UniRef90_UPI000BA57F70	74.3	0.0000000000000196	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1360792_32	1462527.CCDM010000003_gene3683	57.0	0.00000000764	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-1360792_32	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-1360792_33	phrog_8	47.4	0.00000000000045	transcriptional regulator	transcription regulation
UniRef90	UHGV-1360792_33	UniRef90_T5JYM7	52.4	0.000000488	Cro/Cl family transcriptional regulator	N/A
Pfam	UHGV-1360792_33	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1360792_33	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1360792_33	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1360792_34	phrog_989	81.4	5.4e-24	N/A	unknown function
UniRef90	UHGV-1360792_34	UniRef90_A0A7V7UB01	73.9	3.37e-16	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1360792_34	1540257.JQMW01000013_gene708	70.1	0.00000000000000159	N/A	N/A
KOfam	UHGV-1360792_35	K08309	47.8	0.00000000000014	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	N/A
PHROG	UHGV-1360792_35	phrog_19349	149.9	1.12104e-44	N/A	unknown function
UniRef90	UHGV-1360792_35	UniRef90_UPI000DE563D6	141.0	6.92e-39	transglycosylase SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-1360792_35	742740.HMPREF9474_02375	129.0	6.4e-35	lytic transglycosylase activity	N/A
Pfam	UHGV-1360792_35	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-1360792_35	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-1360792_35	PF01464,MF_01616,NF011856,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-1360792_38	phrog_8489	263.6	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1360792_38	UniRef90_UPI001D0B3316	242.0	0	replisome organizer	N/A
eggNOG-mapper	UHGV-1360792_38	1139219.I569_01402	228.0	0	DnaD domain protein	N/A
COG	UHGV-1360792_38	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1360792_38	PF09681,TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-1360792_39	phrog_9804	120.4	1.4e-35	N/A	unknown function
UniRef90	UHGV-1360792_39	UniRef90_A0A1C5T9U7	169.0	0	Loader and inhibitor of phage G40P	N/A
eggNOG-mapper	UHGV-1360792_39	585394.RHOM_14005	117.0	6.01e-31	Loader and inhibitor of phage G40P	N/A
AcrCatalog	UHGV-1360792_39	cluster_137185	114.0	1.4e-34	NA	N/A
Pfam	UHGV-1360792_39	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1360792_39	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1360792_40	phrog_2113	48.1	0.00000000000013	N/A	unknown function
PHROG	UHGV-1360792_42	phrog_155	154.0	1.4013e-45	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1360792_42	UniRef90_UPI001CF85C41	212.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-1360792_42	1462527.CCDM010000010_gene489	173.0	0	ERF superfamily	N/A
Pfam	UHGV-1360792_42	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1360792_42	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1360792_43	phrog_674	136.7	7.70014e-42	N/A	unknown function
UniRef90	UHGV-1360792_43	UniRef90_A0A6N7XHF2	201.0	0	N/A	N/A
eggNOG-mapper	UHGV-1360792_43	1095750.HMPREF9970_1676	161.0	1.4013e-45	N/A	N/A
Pfam	UHGV-1360792_43	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1360792_43	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1360792_44	phrog_7370	69.4	4.1e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1360792_44	UniRef90_UPI001D07AE80	134.0	1.28e-38	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1360792_44	358681.BBR47_35660	55.1	0.0000000323	HNH endonuclease	N/A
Pfam	UHGV-1360792_44	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1360792_44	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1360792_46	phrog_72	70.9	1.4e-20	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1360792_46	UniRef90_A0A8D9PDS2	123.0	2.2e-32	NinB protein	N/A
eggNOG-mapper	UHGV-1360792_46	1507.HMPREF0262_00432	117.0	8.68e-31	N/A	N/A
structural_annotation	UHGV-1360792_46	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-1360792_48	phrog_25385	50.1	0.000000000000041	N/A	unknown function
eggNOG-mapper	UHGV-1360792_48	411468.CLOSCI_00565	62.0	0.0000000000758	N/A	N/A
KOfam	UHGV-1360792_49	K03111	136.9	2.2e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1360792_49	phrog_44	126.7	1.8e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1360792_49	UniRef90_A0A645FRU2	167.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1360792_49	1321814.HMPREF9089_01469	160.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1360792_49	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1360792_49	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1360792_49	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1360792_49	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1360792_49	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1360792_53	phrog_21026	62.9	5.7e-18	N/A	unknown function
PHROG	UHGV-1360792_55	phrog_419	79.1	7.6e-23	N/A	unknown function
UniRef90	UHGV-1360792_55	UniRef90_A0A0V8CZM6	102.0	1.02e-26	Phage-associated protein	N/A
eggNOG-mapper	UHGV-1360792_55	476272.RUMHYD_03324	103.0	6.13e-28	N/A	N/A
structural_annotation	UHGV-1360792_55	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-1360792_56	phrog_20593	50.9	0.000000000000022	N/A	unknown function
structural_annotation	UHGV-1360792_56	PF07870,TIGR02501	N/A	N/A	N/A	N/A
KOfam	UHGV-1360792_58	K00571	186.9	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1360792_58	phrog_67	185.8	0	DNA methyltransferase	other
UniRef90	UHGV-1360792_58	UniRef90_A0A0R1MQE6	282.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1360792_58	574376.BAMA_16525	250.0	0	DNA methylase	N/A
PADLOC	UHGV-1360792_58	MTase_II_00037	164.5	0	Type II methyltransferase	RM
Pfam	UHGV-1360792_58	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1360792_58	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1360792_58	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1360792_59	phrog_1672	45.2	0.0000000000013	N/A	unknown function
Pfam	UHGV-1360792_61	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
PHROG	UHGV-1360792_62	phrog_10714	47.8	0.000000000000093	N/A	unknown function
PHROG	UHGV-1360792_63	phrog_1770	109.1	3.6e-32	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1360792_63	UniRef90_A0A7V8QMV9	87.4	5.19e-19	Crossover junction endodeoxyribonuclease RuvC	N/A
eggNOG-mapper	UHGV-1360792_63	1144932.ATTF01000015_gene1210	79.0	1.82e-16	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	N/A
COG	UHGV-1360792_63	COG0817	N/A	N/A	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	N/A
structural_annotation	UHGV-1360792_63	PF16921,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-1360792_65	phrog_36	54.5	0.0000000000000022	transcriptional regulator	transcription regulation
structural_annotation	UHGV-1360792_65	PF05263,TIGR01636	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1360792_69	PF00181	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1360792_70	PF17917	N/A	N/A	N/A	N/A
PHROG	UHGV-1360792_71	phrog_15863	136.2	1.50001e-40	N/A	unknown function
UniRef90	UHGV-1360792_71	UniRef90_A0A1Y3R3M0	163.0	0	J domain-containing protein	N/A
eggNOG-mapper	UHGV-1360792_71	693746.OBV_01780	151.0	2.10195e-44	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-1360792_71	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A