UHGV-1361068 (vOTU-055048)

Viral Genome: UHGV-1361068

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1361068
vOTU ID	vOTU-055048
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0300912
Associated BioSample	SAMN02333984
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9795
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.88
Jumbo phage	No

Genome content
Genome length (bp)	46,758
GC content	45.40%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	65
CDS density	92%
Average CDS length (bps)	660.74
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1361068_1	K14059	127.0	2.4e-37	int; integrase	N/A
PHROG	UHGV-1361068_1	phrog_1	141.0	9.99967e-42	integrase	integration and excision
UniRef90	UHGV-1361068_1	UniRef90_R6X1Y3	684.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1361068_1	1123250.KB908381_gene1631	329.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1361068_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1361068_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1361068_1	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1361068_4	K18830	49.2	0.00000000000012	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
UniRef90	UHGV-1361068_4	UniRef90_R6X1Y8	181.0	0	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-1361068_4	641107.CDLVIII_1309	90.1	1.16e-21	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1361068_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1361068_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1361068_4	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1361068_8	phrog_6058	77.3	1.1e-22	N/A	unknown function
UniRef90	UHGV-1361068_8	UniRef90_A0A0U9H7T0	60.1	0.000000000198	Modification methylase SinI	N/A
eggNOG-mapper	UHGV-1361068_8	1280689.AUJC01000011_gene1497	68.9	0.0000000000000119	N/A	N/A
structural_annotation	UHGV-1361068_8	PF12728,TIGR01764	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1361068_9	NF041909	N/A	N/A	N/A	N/A
PHROG	UHGV-1361068_10	phrog_14367	53.1	0.0000000000000022	N/A	unknown function
UniRef90	UHGV-1361068_10	UniRef90_R6WTN1	171.0	0	Peptidoglycan-binding LysM	N/A
eggNOG-mapper	UHGV-1361068_10	397291.C804_02419	49.3	0.00000615	LysM domain	N/A
Pfam	UHGV-1361068_10	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-1361068_10	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-1361068_10	MF_02014,NF010723,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-1361068_12	phrog_434	327.5	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1361068_12	UniRef90_R6WGP6	617.0	0	Putative phage-type endonuclease	N/A
eggNOG-mapper	UHGV-1361068_12	706434.HMPREF9429_00551	356.0	0	YqaJ viral recombinase family protein	N/A
Pfam	UHGV-1361068_12	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1361068_12	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1361068_12	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1361068_12	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
UniRef90	UHGV-1361068_13	UniRef90_R6WLK2	124.0	1.96e-35	Conserved domain protein	N/A
Pfam	UHGV-1361068_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1361068_13	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1361068_13	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1361068_14	K07455	204.9	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1361068_14	phrog_148	212.4	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1361068_14	UniRef90_R6XVK6	353.0	0	Putative phage RecT family protein	N/A
eggNOG-mapper	UHGV-1361068_14	525257.HMPREF0204_11404	204.0	0	RecT family	N/A
Pfam	UHGV-1361068_14	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1361068_14	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1361068_14	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1361068_14	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1361068_16	phrog_5968	148.1	4.2039e-44	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1361068_16	UniRef90_R6WTP4	156.0	1.8301e-42	N-terminal phage replisome organizer	N/A
eggNOG-mapper	UHGV-1361068_16	1300150.EMQU_2292	125.0	3.02e-31	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-1361068_16	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-1361068_16	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-1361068_16	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1361068_16	PF09681,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-1361068_19	K00558	259.9	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1361068_19	phrog_116	297.6	0	DNA methyltransferase	other
UniRef90	UHGV-1361068_19	UniRef90_A0A1Q6RAH0	768.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1361068_19	203119.Cthe_1728	395.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-1361068_19	MTase_II_00058	215.9	0	Type II methyltransferase	RM
Pfam	UHGV-1361068_19	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1361068_19	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1361068_19	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1361068_19	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1361068_20	phrog_12728	153.6	0	N/A	unknown function
eggNOG-mapper	UHGV-1361068_20	742765.HMPREF9457_02125	71.2	0.0000000000000217	N/A	N/A
structural_annotation	UHGV-1361068_24	PF16857,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
KOfam	UHGV-1361068_26	K01160	60.7	3.9e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1361068_26	phrog_140	131.7	3.9e-39	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1361068_26	UniRef90_A0A316S9J1	145.0	6.13068e-42	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1361068_26	743719.PaelaDRAFT_5642	126.0	2.2e-35	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1361068_26	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1361068_26	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1361068_26	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1361068_27	K03111	55.4	0.0000000000000017	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1361068_27	phrog_44	60.0	6.8e-17	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1361068_27	UniRef90_A0A1Q6RQK6	271.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1361068_27	904314.SEVCU012_1220	50.1	0.00000725	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1361068_27	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1361068_27	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1361068_27	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1361068_27	PF00436,MF_00984,TIGR00621,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1361068_33	phrog_15863	289.5	0	N/A	unknown function
UniRef90	UHGV-1361068_33	UniRef90_R6WLL6	603.0	0	Cytochrome c domain-containing protein	N/A
eggNOG-mapper	UHGV-1361068_33	693746.OBV_01780	125.0	1.53e-32	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-1361068_33	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
UniRef90	UHGV-1361068_36	UniRef90_UPI00103300F2	59.7	0.000000000601	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1361068_36	1408437.JNJN01000040_gene204	50.8	0.000000436	N/A	N/A
structural_annotation	UHGV-1361068_36	PF20075,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1361068_39	K06909	85.1	9.2e-25	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1361068_39	phrog_2	159.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-1361068_39	UniRef90_UPI001D00EC11	407.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1361068_39	568816.Acin_1836	420.0	0	Terminase RNaseH-like domain	N/A
Pfam	UHGV-1361068_39	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1361068_39	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1361068_39	PF03237,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-1361068_41	phrog_332	432.6	0	head-tail adaptor	connector
UniRef90	UHGV-1361068_41	UniRef90_UPI001F3F9DD9	547.0	0	portal protein	N/A
eggNOG-mapper	UHGV-1361068_41	568816.Acin_1834	602.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-1361068_41	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-1361068_41	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1361068_42	phrog_528	105.3	1.9e-31	N/A	unknown function
eggNOG-mapper	UHGV-1361068_42	1401067.HMPREF0872_06805	93.2	6.81e-23	N/A	N/A
PHROG	UHGV-1361068_43	phrog_458	152.2	4.2039e-45	protease	other
eggNOG-mapper	UHGV-1361068_43	568816.Acin_1832	97.8	2.6e-22	N/A	N/A
PHROG	UHGV-1361068_44	phrog_212	131.6	0	major head protein	head and packaging
UniRef90	UHGV-1361068_44	UniRef90_A0A6J5KPX9	213.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-1361068_44	568816.Acin_1831	352.0	0	N/A	N/A
Pfam	UHGV-1361068_44	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-1361068_44	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1361068_45	phrog_427	61.1	1.7e-17	N/A	unknown function
structural_annotation	UHGV-1361068_45	PF21190	N/A	N/A	N/A	N/A
PHROG	UHGV-1361068_46	phrog_394	153.0	1.4013e-45	tail protein	tail
UniRef90	UHGV-1361068_46	UniRef90_A0A0U1KW64	124.0	1.83e-32	N/A	N/A
eggNOG-mapper	UHGV-1361068_46	1123288.SOV_1c10710	124.0	3.07e-33	N/A	N/A
structural_annotation	UHGV-1361068_46	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-1361068_47	phrog_376	609.8	0	tail protein	tail
UniRef90	UHGV-1361068_47	UniRef90_A0A0U1KV93	352.0	0	N/A	N/A
eggNOG-mapper	UHGV-1361068_47	568816.Acin_1828	656.0	0	N/A	N/A
structural_annotation	UHGV-1361068_47	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-1361068_48	phrog_308	106.9	1.5e-31	internal virion protein	head and packaging
structural_annotation	UHGV-1361068_48	PF13420,MF_02210,NF011709,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-1361068_49	phrog_418	130.2	4.4e-39	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1361068_49	568816.Acin_1826	107.0	7.02e-26	N/A	N/A
structural_annotation	UHGV-1361068_49	PF16789,TIGR02971,COG3524	N/A	N/A	N/A	N/A
PHROG	UHGV-1361068_50	phrog_10475	48.2	0.000000000000078	endolysin	lysis
UniRef90	UHGV-1361068_50	UniRef90_A0A1Q6RQM5	1102.0	0	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-1361068_50	1123288.SOV_2c10740	150.0	3.09e-35	N/A	N/A
Pfam	UHGV-1361068_50	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
structural_annotation	UHGV-1361068_50	PF01464,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-1361068_51	phrog_9880	558.0	0	N/A	unknown function
UniRef90	UHGV-1361068_51	UniRef90_A0A1Q6RQR6	4364.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1361068_51	1123288.SOV_1c10750	189.0	5.60519e-45	N/A	N/A
Pfam	UHGV-1361068_51	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
PHROG	UHGV-1361068_52	phrog_1640	59.3	7.3e-17	tail protein	tail
eggNOG-mapper	UHGV-1361068_52	1123288.SOV_1c10770	81.6	0.00000000000055	Right handed beta helix region	N/A
COG	UHGV-1361068_52	COG5434	N/A	N/A	Polygalacturonase	N/A
structural_annotation	UHGV-1361068_52	PF03906	N/A	N/A	N/A	N/A
PHROG	UHGV-1361068_54	phrog_2837	60.6	2.3e-17	tail protein	tail
UniRef90	UHGV-1361068_54	UniRef90_A0A1Q6R2G9	190.0	0	N/A	N/A
eggNOG-mapper	UHGV-1361068_54	1286631.X805_38770	60.5	0.00000000703	N/A	N/A
Pfam	UHGV-1361068_54	PF14301	N/A	N/A	N/A	DUF4376
structural_annotation	UHGV-1361068_54	PF14301	N/A	N/A	N/A	N/A
PHROG	UHGV-1361068_55	phrog_4105	80.3	1.7e-23	N/A	unknown function
eggNOG-mapper	UHGV-1361068_55	537013.CLOSTMETH_01753	79.7	5.19e-18	N/A	N/A
eggNOG-mapper	UHGV-1361068_57	1392502.JNIO01000008_gene1280	231.0	0	N/A	N/A
structural_annotation	UHGV-1361068_57	PF21277	N/A	N/A	N/A	N/A
UniRef90	UHGV-1361068_60	UniRef90_A0A316S6W0	99.0	1.46e-25	HTH luxR-type domain-containing protein	N/A
Pfam	UHGV-1361068_60	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-1361068_60	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
structural_annotation	UHGV-1361068_60	PF08281,MF_00674,NF001073,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1361068_61	phrog_21718	45.8	0.000000000001	N/A	unknown function
eggNOG-mapper	UHGV-1361068_62	476272.RUMHYD_01953	49.7	0.00000062	N/A	N/A
PHROG	UHGV-1361068_63	phrog_16490	88.9	2.5e-26	N/A	unknown function
eggNOG-mapper	UHGV-1361068_63	445972.ANACOL_01880	84.0	1.26e-16	N/A	N/A
structural_annotation	UHGV-1361068_64	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1361068_65	1378168.N510_03079	57.0	0.000000137	N/A	N/A