UHGV-1361777 (vOTU-003136)

Viral Genome: UHGV-1361777

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1361777
vOTU ID	vOTU-003136
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0266864
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.981
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.04
Jumbo phage	No

Genome content
Genome length (bp)	39,620
GC content	55.38%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	68
CDS density	92%
Average CDS length (bps)	536.29
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1361777_1	K14059	139.5	3.89995e-41	int; integrase	N/A
PHROG	UHGV-1361777_1	phrog_1	164.6	0	integrase	integration and excision
UniRef90	UHGV-1361777_1	UniRef90_A0A6N7TNQ4	712.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1361777_1	411471.SUBVAR_05137	264.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1361777_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1361777_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1361777_1	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1361777_2	UniRef90_A0A6N7TLT0	207.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1361777_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1361777_2	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1361777_5	321955.AAGP01000017_gene2211	56.6	0.000000155	N/A	N/A
structural_annotation	UHGV-1361777_5	PF16900,NF040991	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1361777_8	PF09202,MF_01819,NF041230,COG1321	N/A	N/A	N/A	N/A
PHROG	UHGV-1361777_9	phrog_8	46.2	0.000000000001	transcriptional regulator	transcription regulation
UniRef90	UHGV-1361777_9	UniRef90_UPI001966F1BB	84.3	1.87e-18	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1361777_9	1226322.HMPREF1545_00148	82.0	1.36e-18	Transcriptional	N/A
Pfam	UHGV-1361777_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1361777_9	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-1361777_10	UniRef90_A0A1C7FQD9	82.4	3.15e-19	Transcriptional regulator	N/A
Pfam	UHGV-1361777_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1361777_10	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1361777_11	K07741	142.2	7.10038e-42	antB; anti-repressor protein	N/A
PHROG	UHGV-1361777_11	phrog_63	113.9	1.7e-33	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1361777_11	UniRef90_A0A6N7TLD1	260.0	0	Phage antirepressor Ant	N/A
eggNOG-mapper	UHGV-1361777_11	1051631.F8HGQ0_9CAUD	216.0	0	DNA binding	N/A
Pfam	UHGV-1361777_11	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-1361777_11	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
structural_annotation	UHGV-1361777_11	PF03374,PF08346,TIGR02681,COG3561,COG3645	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1361777_12	760568.Desku_0919	99.8	3.44e-23	N/A	N/A
structural_annotation	UHGV-1361777_12	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1361777_13	1121865.OMW_01950	73.6	3.24e-16	N/A	N/A
structural_annotation	UHGV-1361777_13	PF17516,NF007197	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1361777_14	PF10743,NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1361777_18	PF06718	N/A	N/A	N/A	N/A
PHROG	UHGV-1361777_20	phrog_7838	112.9	2.3e-33	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1361777_20	UniRef90_A0A8D9UGW3	165.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-1361777_20	742767.HMPREF9456_02052	132.0	4.78e-36	N/A	N/A
structural_annotation	UHGV-1361777_20	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
KOfam	UHGV-1361777_21	K03111	144.9	8.09951e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1361777_21	phrog_44	144.2	6.19374e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1361777_21	UniRef90_D4K451	270.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1361777_21	718252.FP2_06770	270.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1361777_21	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1361777_21	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1361777_21	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1361777_21	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1361777_21	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1361777_22	K02086	66.0	5.6e-19	dnaD; DNA replication protein	N/A
PHROG	UHGV-1361777_22	phrog_186	73.6	3e-21	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1361777_22	UniRef90_A0A6N7TLH4	258.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-1361777_22	877411.JMMA01000002_gene2292	69.3	0.0000000000489	N/A	N/A
Pfam	UHGV-1361777_22	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-1361777_22	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1361777_22	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-1361777_22	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1361777_23	PF11417	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1361777_24	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
PHROG	UHGV-1361777_26	phrog_757	221.1	0	DNA methyltransferase	other
UniRef90	UHGV-1361777_26	UniRef90_A0A3E2U1Y9	221.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1361777_26	748224.HMPREF9436_03069	229.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1361777_26	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1361777_26	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-1361777_27	K01160	58.5	2e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1361777_27	phrog_34	57.0	4.2e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1361777_27	UniRef90_A0A6N7TND6	213.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1361777_27	875454.BAEW01000002_gene491	134.0	7.31e-39	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1361777_27	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1361777_27	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1361777_27	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1361777_28	K00571	98.4	8.4e-29	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1361777_28	phrog_23224	209.2	0	DNA methyltransferase	other
UniRef90	UHGV-1361777_28	UniRef90_UPI001CBBED6E	416.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1361777_28	718252.FP2_06750	373.0	0	DNA methylase	N/A
PADLOC	UHGV-1361777_28	MTase_II_00172	85.1	3.6e-26	Type II methyltransferase	RM
Pfam	UHGV-1361777_28	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1361777_28	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1361777_28	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1361777_29	phrog_36	54.2	0.0000000000000025	transcriptional regulator	transcription regulation
structural_annotation	UHGV-1361777_29	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
UniRef90	UHGV-1361777_30	UniRef90_UPI0018CC2891	118.0	7.83e-31	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1361777_30	1235790.C805_00037	111.0	1.1e-28	N/A	N/A
structural_annotation	UHGV-1361777_30	PF04218	N/A	N/A	N/A	N/A
KOfam	UHGV-1361777_31	K06909	142.2	4.49957e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1361777_31	phrog_10250	172.5	0	N/A	unknown function
UniRef90	UHGV-1361777_31	UniRef90_A0A844D8I4	837.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1361777_31	411490.ANACAC_00783	489.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1361777_31	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1361777_31	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1361777_31	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1361777_31	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1361777_31	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1361777_32	phrog_64	131.1	4.5e-39	portal protein	head and packaging
UniRef90	UHGV-1361777_32	UniRef90_A0A6N7TNT3	828.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1361777_32	1042156.CXIVA_01850	85.9	0.00000000000000455	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1361777_32	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1361777_32	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1361777_34	phrog_2468	80.6	1.1e-23	head morphogenesis	head and packaging
UniRef90	UHGV-1361777_34	UniRef90_A0A6N7TLR7	632.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1361777_34	1504822.CCNO01000013_gene286	112.0	2.37e-24	cell adhesion	N/A
Pfam	UHGV-1361777_34	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1361777_34	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1361777_34	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1361777_36	phrog_8680	203.7	0	N/A	unknown function
UniRef90	UHGV-1361777_36	UniRef90_A0A844D688	451.0	0	N/A	N/A
eggNOG-mapper	UHGV-1361777_36	1423790.BN53_04265	181.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-1361777_36	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-1361777_36	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1361777_36	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-1361777_38	phrog_5	51.3	0.000000000000029	tail completion or Neck1 protein	connector
UniRef90	UHGV-1361777_38	UniRef90_A0A6N7TNP6	291.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1361777_38	1123309.AQYB01000018_gene814	93.6	1.99e-22	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1361777_38	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1361777_38	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1361777_39	phrog_478	122.8	1.6e-36	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-1361777_39	UniRef90_A0A373Q857	168.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1361777_39	1111121.HMPREF1247_0834	100.0	2.43e-25	N/A	N/A
structural_annotation	UHGV-1361777_40	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1361777_41	phrog_544	145.3	4.1058e-43	major head protein	head and packaging
UniRef90	UHGV-1361777_41	UniRef90_R0BKA1	430.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1361777_41	476272.RUMHYD_01776	324.0	0	N/A	N/A
structural_annotation	UHGV-1361777_41	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1361777_43	phrog_17977	44.6	0.000000000002	N/A	unknown function
UniRef90	UHGV-1361777_43	UniRef90_A0A844DHJ8	117.0	1.88e-31	Phage head closure protein	N/A
structural_annotation	UHGV-1361777_43	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1361777_44	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-1361777_45	phrog_885	59.2	5e-17	major tail protein	tail
eggNOG-mapper	UHGV-1361777_45	1504822.CCNO01000012_gene492	98.6	4.91e-23	N/A	N/A
structural_annotation	UHGV-1361777_45	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1361777_48	phrog_9959	89.3	2.4e-26	tail length tape measure protein	tail
UniRef90	UHGV-1361777_48	UniRef90_A0A844DDD5	540.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-1361777_48	1492737.FEM08_12070	145.0	1.52e-33	tape measure	N/A
Pfam	UHGV-1361777_48	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1361777_48	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1361777_48	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1361777_48	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1361777_49	phrog_3558	274.4	0	tail protein	tail
UniRef90	UHGV-1361777_49	UniRef90_UPI001C01D15B	682.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1361777_49	1120933.ATUY01000002_gene164	156.0	9.66e-38	Prophage endopeptidase tail	N/A
Pfam	UHGV-1361777_49	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-1361777_49	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1361777_49	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1361777_50	1235792.C808_00094	90.5	7.25e-20	phage tail	N/A
COG	UHGV-1361777_50	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1361777_50	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1361777_52	phrog_10993	147.6	4.2039e-45	Hoc-like head decoration	head and packaging
UniRef90	UHGV-1361777_52	UniRef90_A0A1Q6KPN8	223.0	0	N/A	N/A
eggNOG-mapper	UHGV-1361777_52	718252.FP2_16970	182.0	0	N/A	N/A
structural_annotation	UHGV-1361777_52	PF19789,PF18911	N/A	N/A	N/A	N/A
PHROG	UHGV-1361777_53	phrog_29248	49.5	0.000000000000067	N/A	unknown function
UniRef90	UHGV-1361777_54	UniRef90_A0A2J4JSG1	86.7	2.28e-21	XkdX family protein	N/A
eggNOG-mapper	UHGV-1361777_54	718252.FP2_16990	85.1	1.52e-21	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-1361777_54	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-1361777_54	PF09693	N/A	N/A	N/A	N/A
KOfam	UHGV-1361777_55	K07273	156.5	0	acm; lysozyme	N/A
PHROG	UHGV-1361777_55	phrog_291	114.3	1.2e-33	endolysin	lysis
UniRef90	UHGV-1361777_55	UniRef90_A0A564U0D3	410.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-1361777_55	718252.FP2_04890	245.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1361777_55	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1361777_55	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1361777_55	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1361777_57	phrog_15303	76.9	2e-22	N/A	unknown function
KOfam	UHGV-1361777_60	K23779	55.3	0.0000000000000015	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-1361777_60	phrog_1373	40.8	0.000000000019	transcriptional regulator	transcription regulation
Pfam	UHGV-1361777_60	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1361777_60	COG1309	N/A	N/A	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	N/A
structural_annotation	UHGV-1361777_60	PF01381,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1361777_62	phrog_3754	91.0	1.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-1361777_62	1485543.JMME01000025_gene2462	102.0	5.62e-27	N/A	N/A
PHROG	UHGV-1361777_63	phrog_21718	116.3	2.1e-34	N/A	unknown function
eggNOG-mapper	UHGV-1361777_63	397290.C810_05210	97.4	1.68e-23	N/A	N/A
PHROG	UHGV-1361777_64	phrog_22984	79.9	8.3e-24	N/A	unknown function
PHROG	UHGV-1361777_65	phrog_16490	161.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1361777_65	1408437.JNJN01000043_gene803	123.0	1.61e-31	N/A	N/A
PHROG	UHGV-1361777_66	phrog_20016	205.8	0	N/A	unknown function
UniRef90	UHGV-1361777_66	UniRef90_A0A285PT46	228.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1361777_66	1226322.HMPREF1545_00077	187.0	0	N/A	N/A
structural_annotation	UHGV-1361777_66	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1361777_67	476272.RUMHYD_01772	50.4	0.00000944	N/A	N/A
structural_annotation	UHGV-1361777_67	PF12510	N/A	N/A	N/A	N/A