UHGV-1362200 (vOTU-007110)

Viral Genome: UHGV-1362200

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1362200
vOTU ID	vOTU-007110
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0300084
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9804
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.58
Jumbo phage	No

Genome content
Genome length (bp)	46,548
GC content	45.14%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	65
CDS density	91%
Average CDS length (bps)	653.77
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-1362200_1	PF20075,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1362200_4	K06909	87.3	2.4e-25	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1362200_4	phrog_2	159.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1362200_4	UniRef90_UPI001D00EC11	402.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1362200_4	568816.Acin_1836	417.0	0	Terminase RNaseH-like domain	N/A
Pfam	UHGV-1362200_4	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1362200_4	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1362200_4	PF03237,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-1362200_6	phrog_332	434.1	0	head-tail adaptor	connector
UniRef90	UHGV-1362200_6	UniRef90_UPI001F3F9DD9	540.0	0	portal protein	N/A
eggNOG-mapper	UHGV-1362200_6	568816.Acin_1834	598.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-1362200_6	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-1362200_6	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1362200_7	phrog_528	105.9	1.3e-31	N/A	unknown function
eggNOG-mapper	UHGV-1362200_7	1401067.HMPREF0872_06805	95.9	5.94e-24	N/A	N/A
PHROG	UHGV-1362200_8	phrog_458	151.5	7.00649e-45	protease	other
eggNOG-mapper	UHGV-1362200_8	568816.Acin_1832	97.8	2.6e-22	N/A	N/A
PHROG	UHGV-1362200_9	phrog_212	204.7	0	major head protein	head and packaging
UniRef90	UHGV-1362200_9	UniRef90_A0A6J5KPX9	214.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-1362200_9	568816.Acin_1831	352.0	0	N/A	N/A
Pfam	UHGV-1362200_9	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-1362200_9	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1362200_10	phrog_427	65.5	8.4e-19	N/A	unknown function
structural_annotation	UHGV-1362200_10	PF21190	N/A	N/A	N/A	N/A
PHROG	UHGV-1362200_11	phrog_394	156.5	0	tail protein	tail
UniRef90	UHGV-1362200_11	UniRef90_A0A0U1KW64	125.0	9.16e-33	N/A	N/A
eggNOG-mapper	UHGV-1362200_11	1123288.SOV_1c10710	125.0	1.54e-33	N/A	N/A
structural_annotation	UHGV-1362200_11	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-1362200_12	phrog_376	610.5	0	tail protein	tail
UniRef90	UHGV-1362200_12	UniRef90_A0A0U1KV93	359.0	0	N/A	N/A
eggNOG-mapper	UHGV-1362200_12	568816.Acin_1828	695.0	0	N/A	N/A
structural_annotation	UHGV-1362200_12	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-1362200_13	phrog_308	105.2	5.5e-31	internal virion protein	head and packaging
structural_annotation	UHGV-1362200_13	PF13420,MF_02210,NF011709,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-1362200_14	phrog_418	130.2	3.9e-39	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1362200_14	568816.Acin_1826	107.0	7.02e-26	N/A	N/A
structural_annotation	UHGV-1362200_14	PF16789,TIGR02971,COG3524	N/A	N/A	N/A	N/A
PHROG	UHGV-1362200_15	phrog_10475	40.5	0.000000000016	endolysin	lysis
UniRef90	UHGV-1362200_15	UniRef90_A0A1Q6RQM5	1359.0	0	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-1362200_15	1123288.SOV_2c10740	147.0	3.14e-34	N/A	N/A
structural_annotation	UHGV-1362200_15	PF01464,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-1362200_16	phrog_9880	537.7	0	N/A	unknown function
UniRef90	UHGV-1362200_16	UniRef90_A0A1Q6RQR6	4429.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1362200_16	1123288.SOV_1c10750	187.0	2.10195e-44	N/A	N/A
Pfam	UHGV-1362200_16	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
PHROG	UHGV-1362200_17	phrog_1640	55.2	0.0000000000000014	tail protein	tail
eggNOG-mapper	UHGV-1362200_17	1123288.SOV_1c10770	84.0	0.000000000000105	Right handed beta helix region	N/A
COG	UHGV-1362200_17	COG5434	N/A	N/A	Polygalacturonase	N/A
structural_annotation	UHGV-1362200_17	PF03906	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1362200_18	PF08948	N/A	N/A	N/A	N/A
PHROG	UHGV-1362200_19	phrog_2837	66.7	3.2e-19	tail protein	tail
UniRef90	UHGV-1362200_19	UniRef90_A0A1Q6R2G9	197.0	0	N/A	N/A
eggNOG-mapper	UHGV-1362200_19	1286631.X805_38770	67.0	0.0000000000272	N/A	N/A
Pfam	UHGV-1362200_19	PF14301	N/A	N/A	N/A	DUF4376
structural_annotation	UHGV-1362200_19	PF14301	N/A	N/A	N/A	N/A
PHROG	UHGV-1362200_20	phrog_4105	80.4	1.7e-23	N/A	unknown function
eggNOG-mapper	UHGV-1362200_20	537013.CLOSTMETH_01753	75.9	2.39e-16	N/A	N/A
eggNOG-mapper	UHGV-1362200_22	1392502.JNIO01000008_gene1280	221.0	0	N/A	N/A
structural_annotation	UHGV-1362200_22	PF21277	N/A	N/A	N/A	N/A
PHROG	UHGV-1362200_26	phrog_21718	45.9	0.00000000000099	N/A	unknown function
eggNOG-mapper	UHGV-1362200_27	476272.RUMHYD_01953	49.7	0.00000062	N/A	N/A
PHROG	UHGV-1362200_28	phrog_16490	84.1	4.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-1362200_28	445972.ANACOL_01880	84.0	1.26e-16	N/A	N/A
structural_annotation	UHGV-1362200_29	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-1362200_30	UniRef90_A0A7M1RTM1	97.8	1.36e-22	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1362200_30	1378168.N510_03079	60.8	0.00000000566	N/A	N/A
KOfam	UHGV-1362200_31	K14059	128.7	8.1e-38	int; integrase	N/A
PHROG	UHGV-1362200_31	phrog_1	141.1	1.10002e-41	integrase	integration and excision
UniRef90	UHGV-1362200_31	UniRef90_R6X1Y3	679.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1362200_31	1123250.KB908381_gene1631	333.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1362200_31	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1362200_31	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1362200_31	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1362200_33	K18830	49.2	0.00000000000013	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
UniRef90	UHGV-1362200_33	UniRef90_R6X1Y8	179.0	0	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-1362200_33	641107.CDLVIII_1309	87.4	1.32e-20	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1362200_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1362200_33	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1362200_33	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1362200_37	phrog_6058	77.3	1.2e-22	N/A	unknown function
UniRef90	UHGV-1362200_37	UniRef90_A0A0U9H7T0	60.1	0.000000000198	Modification methylase SinI	N/A
eggNOG-mapper	UHGV-1362200_37	1280689.AUJC01000011_gene1497	68.9	0.0000000000000119	N/A	N/A
structural_annotation	UHGV-1362200_37	PF12728,TIGR01764	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1362200_38	NF041909	N/A	N/A	N/A	N/A
PHROG	UHGV-1362200_39	phrog_14367	69.3	3e-20	N/A	unknown function
UniRef90	UHGV-1362200_39	UniRef90_R6WTN1	211.0	0	Peptidoglycan-binding LysM	N/A
Pfam	UHGV-1362200_39	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-1362200_39	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-1362200_39	MF_02014,NF010723,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-1362200_40	phrog_434	326.3	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1362200_40	UniRef90_R6WGP6	615.0	0	Putative phage-type endonuclease	N/A
eggNOG-mapper	UHGV-1362200_40	706434.HMPREF9429_00551	358.0	0	YqaJ viral recombinase family protein	N/A
Pfam	UHGV-1362200_40	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1362200_40	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1362200_40	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1362200_40	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
UniRef90	UHGV-1362200_41	UniRef90_R6WLK2	129.0	1.27e-37	Conserved domain protein	N/A
Pfam	UHGV-1362200_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1362200_41	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1362200_41	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1362200_42	K07455	178.6	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1362200_42	phrog_148	180.8	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1362200_42	UniRef90_R6XVK6	385.0	0	Putative phage RecT family protein	N/A
eggNOG-mapper	UHGV-1362200_42	1234664.AMRO01000024_gene1791	169.0	0	RecT family	N/A
Pfam	UHGV-1362200_42	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1362200_42	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1362200_42	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1362200_42	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1362200_44	phrog_5968	152.9	1.4013e-45	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1362200_44	UniRef90_R6WTP4	195.0	0	N-terminal phage replisome organizer	N/A
eggNOG-mapper	UHGV-1362200_44	1211817.CCAT010000007_gene1058	129.0	4.91e-33	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-1362200_44	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-1362200_44	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-1362200_44	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1362200_44	PF09681,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1362200_46	1540092.A0A0A0RSY9_9CAUD	53.1	0.00000124	transferase activity, transferring alkyl or aryl (other than methyl) groups	N/A
KOfam	UHGV-1362200_47	K00558	262.4	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1362200_47	phrog_116	299.7	0	DNA methyltransferase	other
UniRef90	UHGV-1362200_47	UniRef90_A0A1Q6RAH0	709.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1362200_47	573061.Clocel_0773	380.0	0	PFAM C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1362200_47	MTase_II_00058	274.3	0	Type II methyltransferase	RM
Pfam	UHGV-1362200_47	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1362200_47	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1362200_47	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1362200_47	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1362200_51	phrog_2776	67.5	1.7e-19	N/A	unknown function
UniRef90	UHGV-1362200_51	UniRef90_A0A2S7ZCT0	96.3	2.77e-22	DNA repair protein MmcB-related protein	N/A
eggNOG-mapper	UHGV-1362200_51	266265.Bxe_A3083	54.3	0.000000984	N/A	N/A
Pfam	UHGV-1362200_51	PF06319	N/A	N/A	DNA repair protein MmcB-like	MmcB-like
structural_annotation	UHGV-1362200_51	PF06319,NF033832,COG5321	N/A	N/A	N/A	N/A
PHROG	UHGV-1362200_53	phrog_1454	57.0	3.1e-16	N/A	unknown function
structural_annotation	UHGV-1362200_57	PF16857,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
KOfam	UHGV-1362200_59	K01160	60.6	4.5e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1362200_59	phrog_140	129.1	2.7e-38	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1362200_59	UniRef90_A0A316S9J1	145.0	6.13068e-42	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1362200_59	743719.PaelaDRAFT_5642	124.0	1.26e-34	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1362200_59	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1362200_59	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1362200_59	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1362200_60	K03111	55.4	0.0000000000000018	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1362200_60	phrog_44	60.0	7.3e-17	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1362200_60	UniRef90_A0A1Q6RQK6	271.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1362200_60	904314.SEVCU012_1220	50.1	0.00000725	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1362200_60	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1362200_60	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1362200_60	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1362200_60	PF00436,MF_00984,TIGR00621,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1362200_65	phrog_15863	285.6	0	N/A	unknown function
UniRef90	UHGV-1362200_65	UniRef90_R6WLL6	331.0	0	Cytochrome c domain-containing protein	N/A
eggNOG-mapper	UHGV-1362200_65	693746.OBV_01780	128.0	3.55e-35	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-1362200_65	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A