UHGV-1362812 (vOTU-006493)

Viral Genome: UHGV-1362812

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1362812
vOTU ID	vOTU-006493
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0325656
Associated BioSample	SAMN03418266
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9771
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.71
Jumbo phage	No

Genome content
Genome length (bp)	56,828
GC content	49.12%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	75
CDS density	92%
Average CDS length (bps)	697.48
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1362812_1	phrog_606	52.4	0.00000000000001	terminase small subunit	head and packaging
UniRef90	UHGV-1362812_1	UniRef90_UPI001D088AD3	71.6	0.000000000000544	DNA-packaging protein	N/A
Pfam	UHGV-1362812_1	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1362812_1	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1362812_2	K06909	287.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1362812_2	phrog_3717	201.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-1362812_2	UniRef90_UPI001C30E6F9	434.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1362812_2	696281.Desru_1088	416.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1362812_2	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-1362812_2	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1362812_2	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1362812_2	PF04466,PF20454,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1362812_5	phrog_156	107.8	1e-31	portal protein	head and packaging
eggNOG-mapper	UHGV-1362812_5	588581.Cpap_1526	287.0	0	N/A	N/A
structural_annotation	UHGV-1362812_5	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
PHROG	UHGV-1362812_7	phrog_14242	92.3	3.7e-27	major head protein	head and packaging
UniRef90	UHGV-1362812_7	UniRef90_A0A3D2CI53	309.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1362812_7	935948.KE386495_gene2267	57.4	0.00000389	N/A	N/A
NCBIFam	UHGV-1362812_7	NF033394.1	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-1362812_7	PF17236,MF_04133,NF033394,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1362812_9	PF20387	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1362812_10	1449126.JQKL01000002_gene1688	90.5	1.23e-16	N/A	N/A
structural_annotation	UHGV-1362812_10	PF11134,NF038128,COG5276	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1362812_13	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1362812_14	phrog_13589	44.3	0.0000000000012	N/A	unknown function
eggNOG-mapper	UHGV-1362812_14	411471.SUBVAR_06929	65.1	0.000000000264	ATPase involved in DNA repair	N/A
COG	UHGV-1362812_14	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
PHROG	UHGV-1362812_15	phrog_24060	178.9	0	N/A	unknown function
UniRef90	UHGV-1362812_15	UniRef90_A0A1S1V8R5	247.0	0	N/A	N/A
eggNOG-mapper	UHGV-1362812_15	1519439.JPJG01000059_gene1944	232.0	0	N/A	N/A
Pfam	UHGV-1362812_15	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1362812_15	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-1362812_16	phrog_19111	42.6	2.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-1362812_16	696281.Desru_1098	57.0	0.00000322	ATPase involved in DNA repair	N/A
COG	UHGV-1362812_16	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
structural_annotation	UHGV-1362812_17	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1362812_19	phrog_4105	73.6	2.3e-21	N/A	unknown function
eggNOG-mapper	UHGV-1362812_19	610130.Closa_0762	73.9	0.00000000000000114	N/A	N/A
PHROG	UHGV-1362812_20	phrog_918	116.3	1e-34	N/A	unknown function
UniRef90	UHGV-1362812_20	UniRef90_UPI000978D6F5	109.0	1.73e-29	N/A	N/A
eggNOG-mapper	UHGV-1362812_20	469618.FVAG_01307	99.8	1.87e-26	N/A	N/A
Pfam	UHGV-1362812_20	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-1362812_20	PF19791	N/A	N/A	N/A	N/A
KOfam	UHGV-1362812_21	K19304	112.3	6.4e-33	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-1362812_21	phrog_7767	104.1	9.4e-31	metallo-endopeptidase	other
UniRef90	UHGV-1362812_21	UniRef90_R5BMM3	78.2	0.00000000000216	Peptidase M23 family	N/A
eggNOG-mapper	UHGV-1362812_21	1121864.OMO_01118	105.0	1.32e-21	Peptidase family M23	N/A
Pfam	UHGV-1362812_21	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-1362812_21	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-1362812_21	PF01551,PF09992,NF040883,COG0739,COG3698	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1362812_23	1121334.KB911071_gene1966	53.5	0.0000000228	N/A	N/A
PHROG	UHGV-1362812_24	phrog_3754	106.0	3.2e-31	N/A	unknown function
eggNOG-mapper	UHGV-1362812_24	476272.RUMHYD_01764	162.0	0	N/A	N/A
PHROG	UHGV-1362812_25	phrog_21718	73.4	2.2e-22	N/A	unknown function
eggNOG-mapper	UHGV-1362812_25	397290.C810_05210	70.5	0.000000000000562	N/A	N/A
PHROG	UHGV-1362812_26	phrog_22984	69.1	6.3e-20	N/A	unknown function
PHROG	UHGV-1362812_27	phrog_16490	118.9	3.1e-36	N/A	unknown function
UniRef90	UHGV-1362812_27	UniRef90_A0A7M1S0F9	65.5	0.00000000928	Spike protein/glycoprotein	N/A
eggNOG-mapper	UHGV-1362812_27	1408437.JNJN01000043_gene803	105.0	1.34e-24	N/A	N/A
PHROG	UHGV-1362812_28	phrog_20016	199.8	0	N/A	unknown function
UniRef90	UHGV-1362812_28	UniRef90_A0A2Z4QB67	189.0	0	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-1362812_28	1226322.HMPREF1545_00077	176.0	0	N/A	N/A
structural_annotation	UHGV-1362812_28	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1362812_29	476272.RUMHYD_01772	52.0	0.00000334	N/A	N/A
structural_annotation	UHGV-1362812_29	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-1362812_31	K14060	118.4	7.6e-35	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1362812_31	phrog_125	160.9	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1362812_31	UniRef90_A0A7X7EJJ7	171.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1362812_31	877420.ATVW01000008_gene521	176.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1362812_31	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-1362812_31	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1362812_31	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-1362812_32	phrog_2172	123.0	1.6e-36	N/A	unknown function
UniRef90	UHGV-1362812_32	UniRef90_W1I1M7	159.0	2.24208e-44	Uncultured bacterium plasmid pRGI00069	N/A
eggNOG-mapper	UHGV-1362812_32	1408311.JNJM01000024_gene619	136.0	4.78e-36	Initiator Replication protein	N/A
Pfam	UHGV-1362812_32	PF01051	N/A	N/A	Initiator Replication protein, WH1	Rep3_N
Pfam	UHGV-1362812_32	PF21205	N/A	N/A	Initiator Rep protein, WH2	Rep3_C
COG	UHGV-1362812_32	COG5527	N/A	N/A	Protein involved in initiation of plasmid replication	N/A
structural_annotation	UHGV-1362812_32	PF01051,PF21205,NF038290,COG5527	N/A	N/A	N/A	N/A
PHROG	UHGV-1362812_36	phrog_14770	93.5	0	N/A	unknown function
UniRef90	UHGV-1362812_36	UniRef90_UPI001BB47D0E	1599.0	0	strawberry notch family protein	N/A
eggNOG-mapper	UHGV-1362812_36	1123288.SOV_4c02780	1188.0	0	protein secretion by the type IV secretion system	N/A
Pfam	UHGV-1362812_36	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
Pfam	UHGV-1362812_36	PF13872	N/A	N/A	P-loop containing NTP hydrolase pore-1	AAA_34
Pfam	UHGV-1362812_36	PF13871	N/A	N/A	C-terminal domain on Strawberry notch homologue	Helicase_C_4
Pfam	UHGV-1362812_36	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-1362812_36	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
KOfam	UHGV-1362812_39	K03111	132.9	4e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1362812_39	phrog_44	123.8	5.6e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1362812_39	UniRef90_R7EVC4	141.0	6.6e-40	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1362812_39	203119.Cthe_1350	123.0	1.05e-33	Single-strand binding protein family	N/A
Pfam	UHGV-1362812_39	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1362812_39	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1362812_39	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1362812_39	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1362812_39	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1362812_40	K01160	46.1	0.0000000000013	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1362812_40	phrog_4632	48.4	0.0000000000000063	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1362812_40	UniRef90_A0A1V5ZUM0	107.0	1.94e-27	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1362812_40	469604.HMPREF0946_01097	53.9	0.000000174	N/A	N/A
structural_annotation	UHGV-1362812_40	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1362812_41	phrog_474	106.1	5.2e-31	phosphofructokinase	other
UniRef90	UHGV-1362812_41	UniRef90_A0A3C1WR20	95.9	2.18e-23	N/A	N/A
eggNOG-mapper	UHGV-1362812_41	1203606.HMPREF1526_00237	79.7	9e-18	N/A	N/A
Pfam	UHGV-1362812_41	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-1362812_41	PF19905	N/A	N/A	N/A	N/A
KOfam	UHGV-1362812_42	K01520	142.6	3.09967e-42	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-1362812_42	phrog_135	128.8	3.3e-38	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1362812_42	UniRef90_UPI00164A78A3	167.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-1362812_42	1282887.AUJG01000016_gene1113	154.0	1.4013e-45	N/A	N/A
Pfam	UHGV-1362812_42	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-1362812_42	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-1362812_42	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-1362812_42	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
KOfam	UHGV-1362812_43	K01493	98.7	8.2e-29	comEB; dCMP deaminase [EC:3.5.4.12]	N/A
PHROG	UHGV-1362812_43	phrog_174	118.3	3.5e-35	dCMP deaminase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1362812_43	UniRef90_R5PNF2	191.0	0	CMP/dCMP deaminase	N/A
eggNOG-mapper	UHGV-1362812_43	634498.mru_1286	173.0	0	deaminase	N/A
PADLOC	UHGV-1362812_43	dCTPase	67.7	1.6e-21	N/A	N/A
Pfam	UHGV-1362812_43	PF00383	N/A	N/A	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
COG	UHGV-1362812_43	COG2131	N/A	N/A	Deoxycytidylate deaminase	N/A
structural_annotation	UHGV-1362812_43	PF00383,TIGR02571,COG2131	N/A	N/A	N/A	N/A
Pfam	UHGV-1362812_45	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1362812_45	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-1362812_46	phrog_1384	73.4	3.5e-21	Mom-like DNA modification protein	other
UniRef90	UHGV-1362812_46	UniRef90_A0A0K2CZB3	156.0	0	Acetyltransferase	N/A
eggNOG-mapper	UHGV-1362812_46	1121468.AUBR01000007_gene285	87.8	1.09e-19	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-1362812_46	PF11039,MF_02210,NF040503,COG1247	N/A	N/A	N/A	N/A
UniRef90	UHGV-1362812_53	UniRef90_A0A0A7I2M5	68.9	0.000000000000536	Peptidase U32	N/A
PHROG	UHGV-1362812_54	phrog_6721	201.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1362812_54	537007.BLAHAN_05521	172.0	0	N/A	N/A
Pfam	UHGV-1362812_54	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
structural_annotation	UHGV-1362812_54	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-1362812_57	phrog_9804	103.2	2.6e-30	N/A	unknown function
UniRef90	UHGV-1362812_57	UniRef90_A0A3D1LDS2	108.0	5.22e-26	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-1362812_57	1499683.CCFF01000013_gene503	85.1	7.38e-18	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1362812_57	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1362812_57	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1362812_58	phrog_270	98.1	1.2e-28	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1362812_58	941770.GL622178_gene367	89.0	1.97e-18	Replication initiation and membrane attachment	N/A
COG	UHGV-1362812_58	COG3756	N/A	N/A	N/A	N/A
PHROG	UHGV-1362812_59	phrog_72	50.6	0.000000000000026	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1362812_59	UniRef90_A0A8D9PDS2	151.0	2.2701e-43	NinB protein	N/A
eggNOG-mapper	UHGV-1362812_59	445972.ANACOL_01825	130.0	9.9e-36	N/A	N/A
structural_annotation	UHGV-1362812_59	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1362812_60	phrog_2205	116.8	1.2e-34	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1362812_60	UniRef90_A0A4R7KUW2	99.8	4.1e-23	Gam-like protein	N/A
eggNOG-mapper	UHGV-1362812_60	1203606.HMPREF1526_01878	92.0	1.27e-20	Bacteriophage Mu Gam like protein	N/A
Pfam	UHGV-1362812_60	PF07352	N/A	N/A	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
structural_annotation	UHGV-1362812_60	PF07352	N/A	N/A	N/A	N/A
PHROG	UHGV-1362812_61	phrog_7838	134.6	7.9e-40	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1362812_61	UniRef90_A0A8D9UGW3	204.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-1362812_61	742767.HMPREF9456_02052	163.0	0	N/A	N/A
structural_annotation	UHGV-1362812_61	PF04098,TIGR00607,COG5055	N/A	N/A	N/A	N/A
KOfam	UHGV-1362812_67	K22300	67.5	3.1e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1362812_67	phrog_8	52.8	0.0000000000000075	transcriptional regulator	transcription regulation
UniRef90	UHGV-1362812_67	UniRef90_R6HTL1	100.0	6.41e-25	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1362812_67	397290.C810_05152	99.8	1.93e-25	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-1362812_67	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1362812_67	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1362812_67	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1362812_68	K07729	55.4	0.0000000000000013	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1362812_68	phrog_3	50.8	0.000000000000072	transcriptional repressor	transcription regulation
UniRef90	UHGV-1362812_68	UniRef90_UPI000E31F980	55.8	0.000000205	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1362812_68	1316408.HSISM1_2145	50.4	0.00000306	Transcriptional	N/A
PADLOC	UHGV-1362812_68	retron_type_VI_hth_cluster2_1	44.1	0.0000000000049	N/A	Retron
Pfam	UHGV-1362812_68	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1362812_68	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1362812_68	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
COG	UHGV-1362812_73	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-1362812_73	PF01381,NF040522,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1362812_75	PF02185,NF012003	N/A	N/A	N/A	N/A