UHGV-1363083 (vOTU-001191)

Viral Genome: UHGV-1363083

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1363083
vOTU ID	vOTU-001191
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0321201
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9752
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.81
Jumbo phage	No

Genome content
Genome length (bp)	54,644
GC content	37.43%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	65
CDS density	94%
Average CDS length (bps)	789.46
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1363083_2	UniRef90_A0A7X2P872	105.0	3.08e-26	Ribbon-helix-helix protein, CopG family	N/A
eggNOG-mapper	UHGV-1363083_2	1095750.HMPREF9970_2261	103.0	1.51e-26	N/A	N/A
structural_annotation	UHGV-1363083_2	PF03869,NF041793,COG4691	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1363083_3	742738.HMPREF9460_04058	64.3	0.000000000556	N/A	N/A
eggNOG-mapper	UHGV-1363083_6	1449126.JQKL01000046_gene2071	56.6	0.000000108	N/A	N/A
structural_annotation	UHGV-1363083_6	PF06056,COG2963	N/A	N/A	N/A	N/A
KOfam	UHGV-1363083_7	K06909	144.1	1.3004e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1363083_7	phrog_979	168.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-1363083_7	UniRef90_A0A355JD48	621.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1363083_7	1232449.BAHV02000016_gene1824	427.0	0	N/A	N/A
Pfam	UHGV-1363083_7	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1363083_7	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1363083_7	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-1363083_8	UniRef90_A0A7X6VKT0	77.8	7.41e-16	C2H2-type domain-containing protein	N/A
structural_annotation	UHGV-1363083_8	PF21169	N/A	N/A	N/A	N/A
PHROG	UHGV-1363083_10	phrog_156	130.4	1.3e-39	portal protein	head and packaging
eggNOG-mapper	UHGV-1363083_10	588581.Cpap_1526	340.0	0	N/A	N/A
structural_annotation	UHGV-1363083_10	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
PHROG	UHGV-1363083_12	phrog_14242	110.0	1.6e-32	major head protein	head and packaging
UniRef90	UHGV-1363083_12	UniRef90_A0A355JD53	494.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1363083_12	588581.Cpap_1528	138.0	2.99e-34	N/A	N/A
NCBIFam	UHGV-1363083_12	NF033394.1	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-1363083_12	PF17236,MF_04133,NF033394,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1363083_14	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-1363083_15	phrog_511	64.4	1.7e-18	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1363083_15	1449126.JQKL01000002_gene1688	118.0	2.69e-25	N/A	N/A
structural_annotation	UHGV-1363083_18	PF09144,NF038393	N/A	N/A	N/A	N/A
UniRef90	UHGV-1363083_20	UniRef90_R6MQV2	135.0	1.53e-30	Tail Collar domain protein	N/A
structural_annotation	UHGV-1363083_20	PF01696,NF000420,COG3420	N/A	N/A	N/A	N/A
PHROG	UHGV-1363083_22	phrog_5073	53.0	0.0000000000000054	tail fiber protein	tail
eggNOG-mapper	UHGV-1363083_22	1536769.P40081_01140	58.9	0.000000845	N/A	N/A
Pfam	UHGV-1363083_22	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-1363083_23	phrog_37799	73.3	1.2e-21	N/A	unknown function
UniRef90	UHGV-1363083_23	UniRef90_R6NA79	284.0	0	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-1363083_23	411470.RUMGNA_02086	137.0	2.41e-39	N/A	N/A
Pfam	UHGV-1363083_23	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1363083_23	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1363083_23	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1363083_23	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1363083_24	397290.C810_05225	68.2	0.0000000000000794	N/A	N/A
KOfam	UHGV-1363083_25	K01448	103.5	2.3e-30	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1363083_25	phrog_435	161.5	0	endolysin	lysis
UniRef90	UHGV-1363083_25	UniRef90_A0A1C5N460	341.0	0	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1363083_25	272563.CD630_09720	202.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1363083_25	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-1363083_25	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1363083_25	PF01520,PF18342,MF_00417,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A
KOfam	UHGV-1363083_26	K21471	157.4	0	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
PHROG	UHGV-1363083_26	phrog_329	122.3	4.3e-36	minor tail protein	tail
UniRef90	UHGV-1363083_26	UniRef90_A0A355JE00	256.0	0	Peptidase C51 domain-containing protein	N/A
eggNOG-mapper	UHGV-1363083_26	748727.CLJU_c01500	134.0	1.2e-32	NLP P60 protein	N/A
Pfam	UHGV-1363083_26	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
Pfam	UHGV-1363083_26	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-1363083_26	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
PHROG	UHGV-1363083_28	phrog_14770	110.4	4.76441e-44	N/A	unknown function
UniRef90	UHGV-1363083_28	UniRef90_UPI001BB47D0E	1453.0	0	strawberry notch family protein	N/A
eggNOG-mapper	UHGV-1363083_28	1123288.SOV_4c02780	1098.0	0	protein secretion by the type IV secretion system	N/A
Pfam	UHGV-1363083_28	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
Pfam	UHGV-1363083_28	PF13872	N/A	N/A	P-loop containing NTP hydrolase pore-1	AAA_34
Pfam	UHGV-1363083_28	PF13871	N/A	N/A	C-terminal domain on Strawberry notch homologue	Helicase_C_4
Pfam	UHGV-1363083_28	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-1363083_28	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
KOfam	UHGV-1363083_29	K14059	237.2	0	int; integrase	N/A
PHROG	UHGV-1363083_29	phrog_1	211.3	0	integrase	integration and excision
UniRef90	UHGV-1363083_29	UniRef90_R6MY37	671.0	0	Putative integrase	N/A
eggNOG-mapper	UHGV-1363083_29	1507.HMPREF0262_00307	219.0	0	Phage integrase family	N/A
Pfam	UHGV-1363083_29	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1363083_29	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1363083_29	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1363083_29	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1363083_31	1120998.AUFC01000015_gene1569	54.3	0.00000176	competence protein COMEC	N/A
COG	UHGV-1363083_31	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
KOfam	UHGV-1363083_33	K01356	142.3	5.09933e-42	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1363083_33	phrog_4	122.9	3.2e-36	transcriptional repressor	transcription regulation
UniRef90	UHGV-1363083_33	UniRef90_UPI0016485B88	204.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1363083_33	411483.FAEPRAA2165_00756	158.0	1.4013e-45	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-1363083_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1363083_33	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1363083_33	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1363083_33	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
UniRef90	UHGV-1363083_34	UniRef90_UPI00164CCC30	76.3	1.88e-16	N/A	N/A
eggNOG-mapper	UHGV-1363083_34	1262914.BN533_00808	73.2	3.32e-16	N/A	N/A
Pfam	UHGV-1363083_34	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-1363083_34	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1363083_34	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1363083_40	PF10922	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1363083_41	PF17574	N/A	N/A	N/A	N/A
PHROG	UHGV-1363083_42	phrog_997	106.6	1.9e-31	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1363083_42	UniRef90_R6MCS9	220.0	0	N/A	N/A
eggNOG-mapper	UHGV-1363083_42	1519439.JPJG01000059_gene1910	118.0	9.51e-33	N/A	N/A
PHROG	UHGV-1363083_43	phrog_1029	207.3	0	N/A	unknown function
eggNOG-mapper	UHGV-1363083_43	1078085.HMPREF1210_01165	158.0	2.8026e-45	N/A	N/A
structural_annotation	UHGV-1363083_43	PF10065,COG5532	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1363083_44	PF09943	N/A	N/A	N/A	N/A
PHROG	UHGV-1363083_45	phrog_674	137.8	7.39998e-41	N/A	unknown function
UniRef90	UHGV-1363083_45	UniRef90_A0A7X5HYD7	196.0	0	N/A	N/A
eggNOG-mapper	UHGV-1363083_45	1408437.JNJN01000039_gene373	163.0	1.4013e-45	N/A	N/A
Pfam	UHGV-1363083_45	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1363083_45	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-1363083_46	K07455	200.5	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1363083_46	phrog_148	222.9	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1363083_46	UniRef90_UPI001D034282	353.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-1363083_46	1095750.HMPREF9970_1675	307.0	0	RecT family	N/A
Pfam	UHGV-1363083_46	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1363083_46	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1363083_46	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1363083_46	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-1363083_47	K06167	46.3	0.00000000000031	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-1363083_47	phrog_392	137.9	8.30003e-41	metal-dependent hydrolase	other
UniRef90	UHGV-1363083_47	UniRef90_A0A7X8XIL0	271.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-1363083_47	665956.HMPREF1032_03101	226.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-1363083_47	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-1363083_47	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1363083_47	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-1363083_48	phrog_398	195.3	0	N/A	unknown function
UniRef90	UHGV-1363083_48	UniRef90_UPI00137A6F13	252.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-1363083_48	1485543.JMME01000021_gene802	172.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-1363083_48	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-1363083_48	PF16784	N/A	N/A	N/A	N/A
KOfam	UHGV-1363083_50	K03111	135.5	6.3e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1363083_50	phrog_44	143.8	9.89317e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1363083_50	UniRef90_R6M3F2	195.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1363083_50	394503.Ccel_0056	145.0	9.75304e-43	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1363083_50	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1363083_50	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1363083_50	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1363083_50	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1363083_50	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1363083_51	K02086	65.1	8.1e-19	dnaD; DNA replication protein	N/A
PHROG	UHGV-1363083_51	phrog_2562	224.8	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1363083_51	UniRef90_UPI00137AD09D	187.0	0	N/A	N/A
eggNOG-mapper	UHGV-1363083_51	445971.ANASTE_00700	181.0	0	N/A	N/A
Pfam	UHGV-1363083_51	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
Pfam	UHGV-1363083_51	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1363083_51	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-1363083_51	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1363083_51	PF14297,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
PHROG	UHGV-1363083_52	phrog_1770	66.1	6.8e-19	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1363083_52	536233.CLO_1822	161.0	0	N/A	N/A
structural_annotation	UHGV-1363083_52	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
KOfam	UHGV-1363083_56	K19779	41.9	0.000000000018	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-1363083_56	phrog_2245	59.2	5.9e-17	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-1363083_56	UniRef90_A0A1C5STJ7	198.0	0	MazG domain-containing protein	N/A
eggNOG-mapper	UHGV-1363083_56	220341.16503116	50.1	0.00000652	Toxic component of a type I toxin-antitoxin (TA) system. Upon overexpression inhibits growth and reduces colony-forming units in both the presence and absence of the Rac prophage, cells become filamentous. Has deoxyribonuclease activity (probably endonucleolytic), does not digest RNA. Its toxic effects are neutralized by sRNA antitoxin RalA, which is encoded in trans on the opposite DNA strand. Has RAL-like activity	N/A
Pfam	UHGV-1363083_56	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1363083_56	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-1363083_56	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-1363083_56	PF14354,COG3478	N/A	N/A	N/A	N/A
PHROG	UHGV-1363083_57	phrog_419	95.6	6.7e-28	N/A	unknown function
UniRef90	UHGV-1363083_57	UniRef90_A0A060QMU0	91.3	1.74e-22	N/A	N/A
eggNOG-mapper	UHGV-1363083_57	1123312.KB904569_gene346	97.4	1.03e-25	N/A	N/A
structural_annotation	UHGV-1363083_57	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-1363083_58	phrog_6802	119.7	1.5e-35	N/A	unknown function
eggNOG-mapper	UHGV-1363083_58	1256908.HMPREF0373_03028	89.7	6.02e-22	N/A	N/A
eggNOG-mapper	UHGV-1363083_59	1235793.C809_02213	164.0	0	N/A	N/A
structural_annotation	UHGV-1363083_59	PF06319,NF033832,COG5321	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1363083_60	1235802.C823_04654	65.1	0.00000000000169	N/A	N/A
PHROG	UHGV-1363083_61	phrog_478	119.0	2.4e-35	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-1363083_61	UniRef90_A0A373Q857	218.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1363083_61	1111121.HMPREF1247_0834	91.3	8.3e-22	N/A	N/A
structural_annotation	UHGV-1363083_63	PF02796,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-1363083_64	K00390	45.9	0.0000000000005	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1363083_64	phrog_424	43.4	0.0000000000053	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1363083_64	UniRef90_UPI001F423F52	97.4	1.57e-23	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1363083_64	1121115.AXVN01000007_gene3560	106.0	2.68e-26	Phosphoadenosine phosphosulfate reductase	N/A
Pfam	UHGV-1363083_64	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1363083_64	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
eggNOG-mapper	UHGV-1363083_65	1408437.JNJN01000032_gene2312	65.9	0.00000000000716	Phosphoadenosine phosphosulfate reductase	N/A
COG	UHGV-1363083_65	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A