UHGV-1364148 (vOTU-055556)

Viral Genome: UHGV-1364148

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1364148
vOTU ID	vOTU-055556
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0235743
Associated BioSample	SAMEA3646674
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.98
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.97
Jumbo phage	No

Genome content
Genome length (bp)	34,369
GC content	39.24%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	57
CDS density	92%
Average CDS length (bps)	556.37
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1364148_2	phrog_88	91.9	6.8e-27	major tail protein	tail
UniRef90	UHGV-1364148_2	UniRef90_A0A3E3JYD8	283.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1364148_2	1460635.JCM19038_2812	52.8	0.00000795	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1364148_2	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1364148_2	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1364148_3	phrog_5	54.2	0.0000000000000041	tail completion or Neck1 protein	connector
UniRef90	UHGV-1364148_3	UniRef90_D4M595	129.0	3.38e-36	Phage protein, HK97 gp10 family	N/A
structural_annotation	UHGV-1364148_3	TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1364148_4	phrog_78	44.2	0.0000000000035	tail terminator	connector
structural_annotation	UHGV-1364148_4	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-1364148_5	UniRef90_A0A844KCF4	139.0	1.18001e-40	Phage head closure protein	N/A
structural_annotation	UHGV-1364148_5	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1364148_7	phrog_10	69.5	2.5e-20	major head protein	head and packaging
UniRef90	UHGV-1364148_7	UniRef90_A0A3E3JY53	535.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1364148_7	1232452.BAIB02000007_gene1625	537.0	0	Phage capsid family	N/A
COG	UHGV-1364148_7	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1364148_7	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1364148_8	K01358	151.9	5.60519e-45	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1364148_8	phrog_94	229.8	0	head maturation protease	head and packaging
UniRef90	UHGV-1364148_8	UniRef90_A0A3E3JYT5	274.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1364148_8	1232452.BAIB02000007_gene1626	272.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1364148_8	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1364148_8	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1364148_8	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1364148_9	phrog_12	65.5	3.4e-19	portal protein	head and packaging
UniRef90	UHGV-1364148_9	UniRef90_A0A3E3JY21	467.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1364148_9	1232452.BAIB02000007_gene1627	441.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1364148_9	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1364148_9	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1364148_9	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1364148_10	phrog_9	264.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1364148_10	UniRef90_A0A3E3JY25	958.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1364148_10	1232452.BAIB02000007_gene1629	660.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-1364148_10	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1364148_10	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1364148_10	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1364148_10	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1364148_11	phrog_5110	98.7	3.4e-29	terminase small subunit	head and packaging
UniRef90	UHGV-1364148_11	UniRef90_A0A1C5LZF0	105.0	2.72e-27	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-1364148_11	936140.AEOT01000014_gene1353	65.9	0.00000000000134	N/A	N/A
structural_annotation	UHGV-1364148_11	PF05119,TIGR01558	N/A	N/A	N/A	N/A
UniRef90	UHGV-1364148_12	UniRef90_UPI001E546D43	103.0	4.68e-26	ATP-binding protein	N/A
structural_annotation	UHGV-1364148_12	PF18748,MF_03172,NF038208,COG4639	N/A	N/A	N/A	N/A
KOfam	UHGV-1364148_13	K07451	46.1	0.00000000000088	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1364148_13	phrog_119	74.8	1.2e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1364148_13	UniRef90_A0A7G5N126	157.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1364148_13	1232452.BAIB02000007_gene1631	102.0	5.72e-27	HNH nucleases	N/A
Pfam	UHGV-1364148_13	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1364148_13	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-1364148_14	500632.CLONEX_00760	88.2	6.5e-20	N/A	N/A
eggNOG-mapper	UHGV-1364148_15	742765.HMPREF9457_03068	108.0	1.24e-30	N/A	N/A
PHROG	UHGV-1364148_16	phrog_36	72.8	5.6e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-1364148_16	UniRef90_A0A173S7S0	86.7	7.58e-19	RNA polymerase sigma-70 factor, sigma-B/F/G subfamily	N/A
eggNOG-mapper	UHGV-1364148_16	1123075.AUDP01000020_gene1515	86.3	1.51e-19	sigma factor activity	N/A
Pfam	UHGV-1364148_16	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
COG	UHGV-1364148_16	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1364148_16	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-1364148_17	phrog_6568	50.6	0.000000000000027	N/A	unknown function
UniRef90	UHGV-1364148_19	UniRef90_UPI00189FCF13	71.2	0.000000000000447	N/A	N/A
eggNOG-mapper	UHGV-1364148_19	742723.HMPREF9477_00919	51.2	0.00000726	N/A	N/A
PHROG	UHGV-1364148_20	phrog_6570	40.2	0.000000000046	N/A	unknown function
PHROG	UHGV-1364148_21	phrog_8684	102.6	6.3e-31	N/A	unknown function
UniRef90	UHGV-1364148_21	UniRef90_UPI000C75AF45	299.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-1364148_21	742723.HMPREF9477_00921	181.0	0	YopX protein	N/A
Pfam	UHGV-1364148_21	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1364148_21	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1364148_21	PF09643,TIGR01671	N/A	N/A	N/A	N/A
KOfam	UHGV-1364148_22	K06223	204.7	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-1364148_22	phrog_56	173.5	0	DNA methyltransferase	other
UniRef90	UHGV-1364148_22	UniRef90_UPI00148B1899	443.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-1364148_22	1235802.C823_01030	409.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-1364148_22	MTase_II_00030	257.9	0	Type II methyltransferase	RM
Pfam	UHGV-1364148_22	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-1364148_22	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-1364148_22	PF02086,MF_01872,NF008152,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-1364148_23	phrog_37410	100.1	7.2e-30	N/A	unknown function
structural_annotation	UHGV-1364148_23	PF08169,NF037951,COG1918	N/A	N/A	N/A	N/A
Pfam	UHGV-1364148_25	PF00269	N/A	N/A	Small, acid-soluble spore proteins, alpha/beta type	SASP
PHROG	UHGV-1364148_27	phrog_17690	79.4	2.9e-23	N/A	unknown function
UniRef90	UHGV-1364148_27	UniRef90_A0A6L5XWF4	58.2	0.0000000787	3-dehydroquinate synthase	N/A
eggNOG-mapper	UHGV-1364148_27	1235798.C817_03495	68.2	0.00000000000131	N/A	N/A
KOfam	UHGV-1364148_29	K03111	124.1	1.7e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1364148_29	phrog_44	133.7	1.3e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1364148_29	UniRef90_F3AAS3	285.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1364148_29	537007.BLAHAN_04317	219.0	0	N/A	N/A
Pfam	UHGV-1364148_29	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1364148_29	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1364148_29	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1364148_29	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1364148_29	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1364148_30	phrog_15077	301.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1364148_30	742765.HMPREF9457_02110	414.0	0	N/A	N/A
structural_annotation	UHGV-1364148_30	NF038070	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1364148_31	1235798.C817_05493	63.9	0.00000000000299	N/A	N/A
PHROG	UHGV-1364148_32	phrog_531	51.1	0.000000000000023	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1364148_32	UniRef90_F3AAS5	251.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1364148_32	411461.DORFOR_01140	78.2	1.69e-16	RNA-DNA hybrid ribonuclease activity	N/A
Pfam	UHGV-1364148_32	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-1364148_32	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-1364148_32	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-1364148_33	phrog_3584	167.5	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1364148_33	1232452.BAIB02000007_gene1647	220.0	0	N/A	N/A
structural_annotation	UHGV-1364148_33	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-1364148_35	phrog_30860	136.4	4.10006e-41	N/A	unknown function
PHROG	UHGV-1364148_38	phrog_32192	50.7	0.000000000000028	N/A	unknown function
eggNOG-mapper	UHGV-1364148_38	1235790.C805_00013	62.8	0.0000000000105	N/A	N/A
PHROG	UHGV-1364148_40	phrog_14088	63.1	2.3e-18	N/A	unknown function
UniRef90	UHGV-1364148_40	UniRef90_A0A3R6M7R7	67.4	0.000000000000195	Carboxypeptidase	N/A
eggNOG-mapper	UHGV-1364148_40	1235802.C823_04730	65.5	0.000000000000194	N/A	N/A
PHROG	UHGV-1364148_41	phrog_16447	190.4	0	N/A	unknown function
UniRef90	UHGV-1364148_41	UniRef90_A0A8E3SN40	225.0	0	N/A	N/A
eggNOG-mapper	UHGV-1364148_41	1403390.U3PDZ3_9CAUD	171.0	0	N/A	N/A
Pfam	UHGV-1364148_41	PF10083	N/A	N/A	N/A	DUF2321
structural_annotation	UHGV-1364148_41	PF10083,COG4306	N/A	N/A	N/A	N/A
KOfam	UHGV-1364148_44	K01446	77.6	1.4e-22	PGRP; peptidoglycan recognition protein	N/A
PHROG	UHGV-1364148_44	phrog_7854	226.8	0	endolysin	lysis
UniRef90	UHGV-1364148_44	UniRef90_UPI001C3B2E98	220.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1364148_44	1235798.C817_04599	229.0	0	Ami_2	N/A
Pfam	UHGV-1364148_44	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1364148_44	PF01473	N/A	N/A	Putative cell wall binding repeat	Choline_bind_1
COG	UHGV-1364148_44	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
PHROG	UHGV-1364148_45	phrog_1048	86.4	2e-25	N/A	unknown function
UniRef90	UHGV-1364148_45	UniRef90_UPI001D055B23	160.0	0	N/A	N/A
eggNOG-mapper	UHGV-1364148_45	411462.DORLON_00765	108.0	2.93e-27	N/A	N/A
Pfam	UHGV-1364148_45	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-1364148_45	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-1364148_45	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-1364148_46	phrog_443	54.5	0.0000000000000032	holin	lysis
UniRef90	UHGV-1364148_46	UniRef90_UPI001C0212A6	101.0	1.28e-26	holin	N/A
eggNOG-mapper	UHGV-1364148_46	742733.HMPREF9469_01797	83.6	2.03e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1364148_46	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1364148_46	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-1364148_48	phrog_2310	44.9	0.0000000000011	N/A	unknown function
eggNOG-mapper	UHGV-1364148_48	931276.Cspa_c27110	48.5	0.000000574	N/A	N/A
UniRef90	UHGV-1364148_49	UniRef90_A0A174NC72	89.0	0.0000000000000214	BppU_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1364148_49	411470.RUMGNA_00122	176.0	3.89561e-43	N/A	N/A
PHROG	UHGV-1364148_50	phrog_16164	256.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1364148_50	457412.RSAG_01113	88.6	2.34e-18	N/A	N/A
structural_annotation	UHGV-1364148_50	PF10651,NF032891	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1364148_51	537007.BLAHAN_05250	94.4	3.76e-23	N/A	N/A
eggNOG-mapper	UHGV-1364148_52	1235798.C817_04596	73.6	0.00000000000743	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-1364148_52	COG4675	N/A	N/A	Phage tail collar domain	N/A
KOfam	UHGV-1364148_53	K21471	56.8	5.3e-16	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
PHROG	UHGV-1364148_53	phrog_14030	136.5	1.2e-40	N/A	unknown function
UniRef90	UHGV-1364148_53	UniRef90_A0A6N3GLP8	431.0	0	Phage_lysozyme2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1364148_53	33035.JPJF01000093_gene2240	324.0	0	NlpC/P60 family	N/A
Pfam	UHGV-1364148_53	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-1364148_53	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-1364148_53	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1364148_53	PF18013,PF05382,NF033742,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-1364148_54	phrog_13289	419.8	0	tail protein	tail
UniRef90	UHGV-1364148_54	UniRef90_A0A844KBR1	669.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1364148_54	1235798.C817_02568	469.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1364148_54	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1364148_54	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1364148_54	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
structural_annotation	UHGV-1364148_54	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1364148_55	phrog_33	72.3	1e-20	distal tail protein Dit	tail
UniRef90	UHGV-1364148_55	UniRef90_A0A844KEE5	214.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1364148_55	908340.HMPREF9406_2569	211.0	0	phage tail	N/A
Pfam	UHGV-1364148_55	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-1364148_55	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1364148_55	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1364148_55	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1364148_56	phrog_1272	223.0	0	tail length tape measure protein	tail
UniRef90	UHGV-1364148_56	UniRef90_A0A7G5N113	598.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1364148_56	931626.Awo_c35010	393.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1364148_56	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1364148_56	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1364148_56	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A