UHGV-1364724 (vOTU-006394)

Viral Genome: UHGV-1364724

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1364724
vOTU ID	vOTU-006394
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0270902
Associated BioSample	SAMEA3136721
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.982
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.8
Jumbo phage	No

Genome content
Genome length (bp)	40,403
GC content	54.23%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	77
CDS density	91%
Average CDS length (bps)	478.52
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1364724_1	phrog_20016	165.5	0	N/A	unknown function
UniRef90	UHGV-1364724_1	UniRef90_A0A2Z4QB67	160.0	0	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-1364724_1	1226322.HMPREF1545_00077	148.0	4.2039e-44	N/A	N/A
structural_annotation	UHGV-1364724_1	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1364724_2	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1364724_3	1232443.BAIA02000078_gene6	57.0	0.00000000532	N/A	N/A
KOfam	UHGV-1364724_4	K06400	273.8	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1364724_4	phrog_95	282.8	0	integrase	integration and excision
UniRef90	UHGV-1364724_4	UniRef90_A0A3A9I9T1	352.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1364724_4	357809.Cphy_2997	282.0	0	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-1364724_4	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1364724_4	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1364724_4	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1364724_4	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1364724_5	1408322.JHYK01000019_gene245	51.2	0.00000966	Putative restriction endonuclease	N/A
Pfam	UHGV-1364724_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1364724_5	COG4636	N/A	N/A	Endonuclease, Uma2 family (restriction endonuclease fold)	N/A
structural_annotation	UHGV-1364724_5	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1364724_6	phrog_301	42.5	0.000000000012	secreted protein	other
eggNOG-mapper	UHGV-1364724_6	1262449.CP6013_2082	171.0	0	N/A	N/A
structural_annotation	UHGV-1364724_6	PF11631,TIGR03066	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1364724_9	PF13601,MF_01819,NF008565,COG1846	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1364724_10	NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1364724_11	K07729	40.0	0.000000000077	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-1364724_11	UniRef90_A0A810QCI5	69.7	0.000000000000022	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1364724_11	1514668.JOOA01000002_gene1643	52.8	0.000000312	N/A	N/A
Pfam	UHGV-1364724_11	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1364724_11	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1364724_11	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1364724_15	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1364724_17	phrog_4973	47.8	0.00000000000023	N/A	unknown function
UniRef90	UHGV-1364724_17	UniRef90_A0A3D3Y5F2	65.5	0.00000000000192	DNA-binding protein	N/A
Pfam	UHGV-1364724_17	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1364724_17	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
UniRef90	UHGV-1364724_18	UniRef90_A0A845QLQ8	184.0	0	N/A	N/A
eggNOG-mapper	UHGV-1364724_18	1238184.CM001792_gene2550	98.2	1.68e-22	N/A	N/A
Pfam	UHGV-1364724_18	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-1364724_18	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
UniRef90	UHGV-1364724_19	UniRef90_B0PAM4	164.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1364724_19	1238184.CM001792_gene2549	52.4	0.00000845	N/A	N/A
Pfam	UHGV-1364724_19	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
structural_annotation	UHGV-1364724_19	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-1364724_20	phrog_72	69.1	6.3e-20	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1364724_20	UniRef90_A0A8D9PDS2	168.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-1364724_20	445972.ANACOL_01825	149.0	2.11596e-43	N/A	N/A
structural_annotation	UHGV-1364724_20	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1364724_21	phrog_7370	58.6	9.4e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1364724_21	UniRef90_UPI001C122365	133.0	3.58e-38	HNH endonuclease	N/A
Pfam	UHGV-1364724_21	PF01844	N/A	N/A	HNH endonuclease	HNH
KOfam	UHGV-1364724_22	K03111	149.0	4.76441e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1364724_22	phrog_44	148.1	4.76441e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1364724_22	UniRef90_A0A1Q6RGI0	208.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1364724_22	1226322.HMPREF1545_04080	205.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1364724_22	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1364724_22	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1364724_22	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1364724_22	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1364724_22	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1364724_23	phrog_2149	67.6	2.2e-19	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1364724_23	UniRef90_A0A417QFV0	104.0	1.67e-23	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1364724_23	742740.HMPREF9474_03117	177.0	0	N/A	N/A
structural_annotation	UHGV-1364724_23	PF01978,NF000243,COG0735	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1364724_25	PF21485	N/A	N/A	N/A	N/A
PHROG	UHGV-1364724_27	phrog_190	83.1	3.4e-24	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1364724_27	UniRef90_A0A845R8D4	108.0	7.33e-27	N/A	N/A
eggNOG-mapper	UHGV-1364724_27	1226322.HMPREF1545_00295	111.0	1.18e-28	N/A	N/A
Pfam	UHGV-1364724_27	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1364724_27	PF06356,NF033179	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1364724_29	1232443.BAIA02000103_gene2903	90.9	3.15e-21	N/A	N/A
KOfam	UHGV-1364724_30	K00558	42.7	5.4e-20	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1364724_30	phrog_16528	82.8	1.2e-24	DNA methyltransferase	other
UniRef90	UHGV-1364724_30	UniRef90_A0A6N9PX21	290.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1364724_30	871963.Desdi_1341	204.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-1364724_30	oMTase_00004	41.5	8.3e-40	orphan methyltransferase	RM
Pfam	UHGV-1364724_30	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1364724_30	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
UniRef90	UHGV-1364724_31	UniRef90_A0A8D9PDK1	55.8	0.000000025	Anti-repressor	N/A
UniRef90	UHGV-1364724_33	UniRef90_A0A8D9PDT5	54.7	0.000000197	Hydrogenase/urease nickel incorporation protein	N/A
PHROG	UHGV-1364724_35	phrog_478	124.4	5.1e-37	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-1364724_35	UniRef90_A0A373Q857	177.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1364724_35	1111121.HMPREF1247_0834	103.0	1.22e-26	N/A	N/A
KOfam	UHGV-1364724_37	K02647	56.3	4.4e-16	cdaR; carbohydrate diacid regulator	N/A
UniRef90	UHGV-1364724_37	UniRef90_UPI00164DE10C	60.1	0.000000000139	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1364724_37	1301100.HG529387_gene5110	60.1	0.000000000847	Putative sugar diacid recognition	N/A
Pfam	UHGV-1364724_37	PF13556	N/A	N/A	PucR C-terminal helix-turn-helix domain	HTH_30
COG	UHGV-1364724_37	COG3835	N/A	N/A	Sugar diacid utilization regulator CdaR	N/A
structural_annotation	UHGV-1364724_37	PF13556,TIGR00637,COG2771	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1364724_38	PF06003,MF_01354,TIGR00739,COG5475	N/A	N/A	N/A	N/A
KOfam	UHGV-1364724_39	K22299	42.0	0.000000000019	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
UniRef90	UHGV-1364724_39	UniRef90_A0A1C6J963	107.0	7.05e-29	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-1364724_39	1226322.HMPREF1545_00039	70.5	0.00000000000000361	sequence-specific DNA binding	N/A
Pfam	UHGV-1364724_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1364724_39	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-1364724_40	K07319	124.0	1.3e-36	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-1364724_40	phrog_498	439.4	0	DNA methyltransferase	other
UniRef90	UHGV-1364724_40	UniRef90_A0A810Q3Z7	437.0	0	N6_N4_Mtase domain-containing protein	N/A
eggNOG-mapper	UHGV-1364724_40	1423758.BN55_01455	424.0	0	DNA methylase	N/A
PADLOC	UHGV-1364724_40	MTase_II_00015	238.5	0	Type II methyltransferase	RM
Pfam	UHGV-1364724_40	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-1364724_40	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1364724_40	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1364724_40	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-1364724_42	phrog_38	162.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-1364724_42	UniRef90_UPI00166CA12B	446.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1364724_42	1140001.I571_01829	449.0	0	N/A	N/A
structural_annotation	UHGV-1364724_42	PF17289,PF05876,MF_04147,NF033889,COG5323	N/A	N/A	N/A	N/A
PHROG	UHGV-1364724_43	phrog_64	163.7	0	portal protein	head and packaging
UniRef90	UHGV-1364724_43	UniRef90_UPI0018A8A301	593.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1364724_43	1235800.C819_02239	92.8	2.13e-17	phage portal protein, SPP1	N/A
Pfam	UHGV-1364724_43	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1364724_43	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1364724_44	phrog_115	113.8	7.6e-34	minor head protein	head and packaging
UniRef90	UHGV-1364724_44	UniRef90_A0A810PSD3	548.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1364724_44	1111121.HMPREF1247_0797	166.0	1.80067e-42	cell adhesion	N/A
Pfam	UHGV-1364724_44	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1364724_44	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1364724_44	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1364724_44	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
UniRef90	UHGV-1364724_45	UniRef90_A0A3A9EIF3	99.4	1.64e-24	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1364724_45	1504822.CCNO01000013_gene284	80.1	5.55e-18	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1364724_45	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
PHROG	UHGV-1364724_46	phrog_374	221.1	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1364724_46	673376.F2VHW3_9CAUD	253.0	0	sequence-specific DNA binding transcription factor activity	N/A
structural_annotation	UHGV-1364724_47	PF18152	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1364724_48	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1364724_49	phrog_544	123.5	1.9e-36	major head protein	head and packaging
UniRef90	UHGV-1364724_49	UniRef90_A0A1C6B5R0	333.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1364724_49	476272.RUMHYD_01776	314.0	0	N/A	N/A
structural_annotation	UHGV-1364724_49	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1364724_51	phrog_17977	79.2	3.7e-23	N/A	unknown function
UniRef90	UHGV-1364724_51	UniRef90_A0A285PT57	95.9	2.94e-23	Phage head-tail joining protein	N/A
structural_annotation	UHGV-1364724_51	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1364724_52	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-1364724_53	phrog_885	84.4	1.1e-24	major tail protein	tail
UniRef90	UHGV-1364724_53	UniRef90_A0A843J9F0	222.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1364724_53	1504822.CCNO01000012_gene492	252.0	0	N/A	N/A
structural_annotation	UHGV-1364724_53	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-1364724_54	UniRef90_A0A285PXU7	75.1	0.00000000000000956	Consensus disorder prediction	N/A
PHROG	UHGV-1364724_56	phrog_6900	254.4	0	tail length tape measure protein	tail
UniRef90	UHGV-1364724_56	UniRef90_A0A3D1JBH2	257.0	0	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-1364724_56	1499683.CCFF01000017_gene2565	290.0	0	tape measure	N/A
COG	UHGV-1364724_56	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1364724_56	PF20155,COG3941	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1364724_57	1235797.C816_02660	87.4	2.12e-20	N/A	N/A
structural_annotation	UHGV-1364724_57	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1364724_58	phrog_13879	461.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1364724_58	1235797.C816_02659	801.0	0	N/A	N/A
structural_annotation	UHGV-1364724_58	PF14594,PF06588,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
COG	UHGV-1364724_59	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
structural_annotation	UHGV-1364724_59	PF00354	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1364724_60	742738.HMPREF9460_01382	94.0	6.42e-18	N/A	N/A
Pfam	UHGV-1364724_60	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
structural_annotation	UHGV-1364724_60	PF13620,NF040788,COG2512	N/A	N/A	N/A	N/A
PHROG	UHGV-1364724_62	phrog_1382	42.6	0.0000000000043	N/A	unknown function
eggNOG-mapper	UHGV-1364724_62	1336234.JAGN01000004_gene512	53.9	0.00000000849	N/A	N/A
PHROG	UHGV-1364724_63	phrog_1863	63.6	1.9e-18	N/A	unknown function
eggNOG-mapper	UHGV-1364724_63	748224.HMPREF9436_01412	99.0	1.99e-26	N/A	N/A
PHROG	UHGV-1364724_64	phrog_13256	69.5	3e-20	N/A	unknown function
eggNOG-mapper	UHGV-1364724_64	1160721.RBI_II00522	68.6	0.0000000000000107	N/A	N/A
PHROG	UHGV-1364724_66	phrog_18955	63.8	1.7e-18	N/A	unknown function
UniRef90	UHGV-1364724_66	UniRef90_UPI00164D2830	374.0	0	phosphodiester glycosidase family protein	N/A
eggNOG-mapper	UHGV-1364724_66	696369.KI912183_gene2044	57.4	0.000000701	exopolysaccharide biosynthesis protein	N/A
Pfam	UHGV-1364724_66	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
COG	UHGV-1364724_66	COG4632	N/A	N/A	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	N/A
structural_annotation	UHGV-1364724_66	PF09992,COG4632	N/A	N/A	N/A	N/A
KOfam	UHGV-1364724_67	K08640	97.5	2.2e-28	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-1364724_67	phrog_894	100.1	2.7e-29	endolysin	lysis
UniRef90	UHGV-1364724_67	UniRef90_K1TJK4	214.0	0	Peptidase_M15_3 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-1364724_67	1235797.C816_04171	191.0	0	Peptidase M15	N/A
Pfam	UHGV-1364724_67	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-1364724_67	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1364724_67	PF05951,COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1364724_69	PF01402,NF008671	N/A	N/A	N/A	N/A
PHROG	UHGV-1364724_72	phrog_4709	114.9	2.1e-34	N/A	unknown function
eggNOG-mapper	UHGV-1364724_72	693746.OBV_41590	125.0	1.28e-36	N/A	N/A
AcrCatalog	UHGV-1364724_72	cluster_3300	93.6	8.86e-29	NA	N/A
PHROG	UHGV-1364724_74	phrog_3754	109.5	2.5e-32	N/A	unknown function
eggNOG-mapper	UHGV-1364724_74	1226322.HMPREF1545_00073	163.0	0	N/A	N/A
PHROG	UHGV-1364724_75	phrog_21718	92.2	5.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-1364724_75	397290.C810_05210	72.8	0.0000000000000465	N/A	N/A
PHROG	UHGV-1364724_76	phrog_22984	84.2	8.8e-25	N/A	unknown function
PHROG	UHGV-1364724_77	phrog_16490	161.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1364724_77	1408437.JNJN01000043_gene803	130.0	6.58e-35	N/A	N/A