UHGV-1365062 (vOTU-055724)

Viral Genome: UHGV-1365062

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1365062
vOTU ID	vOTU-055724
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0300089
Associated BioSample	SAMEA3182069
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.98
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	7.91
Jumbo phage	No

Genome content
Genome length (bp)	46,593
GC content	52.09%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	95%
Average CDS length (bps)	802.64
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1365062_1	phrog_21376	45.5	1e-18	N/A	unknown function
eggNOG-mapper	UHGV-1365062_1	1226322.HMPREF1545_00787	112.0	8.8e-22	N/A	N/A
Pfam	UHGV-1365062_1	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
Pfam	UHGV-1365062_1	PF18838	N/A	N/A	Large polyvalent protein associated domain 23	LPD23
Pfam	UHGV-1365062_1	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
PHROG	UHGV-1365062_3	phrog_156	199.2	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1365062_3	1519439.JPJG01000060_gene1886	402.0	0	N/A	N/A
structural_annotation	UHGV-1365062_3	PF16510,MF_04120,TIGR01542,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1365062_4	K21523	69.1	3.3e-20	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-1365062_4	phrog_2	100.9	2.2e-29	terminase large subunit	head and packaging
UniRef90	UHGV-1365062_4	UniRef90_UPI001F401ABC	400.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1365062_4	696281.Desru_1088	194.0	0	Phage terminase large subunit	N/A
COG	UHGV-1365062_4	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1365062_4	PF03354,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-1365062_5	phrog_3064	72.1	6.8e-21	terminase	head and packaging
UniRef90	UHGV-1365062_5	UniRef90_A0A2I7QK24	77.8	0.00000000000000735	Coil containing protein (Fragment)	N/A
PHROG	UHGV-1365062_8	phrog_918	109.4	1.4e-32	N/A	unknown function
UniRef90	UHGV-1365062_8	UniRef90_UPI001D020797	120.0	1.21e-33	N/A	N/A
eggNOG-mapper	UHGV-1365062_8	1499683.CCFF01000014_gene3910	118.0	8.47e-34	N/A	N/A
Pfam	UHGV-1365062_8	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-1365062_8	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-1365062_15	phrog_799	136.1	2.6e-40	DNA methyltransferase	other
UniRef90	UHGV-1365062_15	UniRef90_A0A414ZQZ4	170.0	0	NAD(P)-dependent oxidoreductase	N/A
eggNOG-mapper	UHGV-1365062_15	1123263.AUKY01000096_gene1823	147.0	9.89036e-42	DNA restriction-modification system	N/A
COG	UHGV-1365062_15	COG0827	N/A	N/A	Adenine-specific DNA N6-methylase	N/A
KOfam	UHGV-1365062_16	K00558	205.0	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1365062_16	phrog_116	245.5	0	DNA methyltransferase	other
UniRef90	UHGV-1365062_16	UniRef90_A0A2Z4GUI8	583.0	0	Site-specific DNA methylase	N/A
eggNOG-mapper	UHGV-1365062_16	1519439.JPJG01000060_gene1872	474.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-1365062_16	MTase_II_00164	80.1	2.6e-29	Type II methyltransferase	RM
Pfam	UHGV-1365062_16	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1365062_16	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1365062_16	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365062_18	PF18195,MF_00257,NF041655,COG1923	N/A	N/A	N/A	N/A
PHROG	UHGV-1365062_21	phrog_1029	176.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1365062_21	1274374.CBLK010000060_gene544	138.0	2.68e-38	N/A	N/A
KOfam	UHGV-1365062_22	K03111	149.8	2.66247e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1365062_22	phrog_44	140.5	1.10002e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365062_22	UniRef90_A0A2V2ET02	193.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1365062_22	1042163.BRLA_c046430	119.0	2.51e-32	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1365062_22	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1365062_22	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1365062_22	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1365062_22	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1365062_22	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1365062_23	K03111	55.3	0.0000000000000015	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1365062_23	phrog_26861	103.7	6.6e-31	N/A	unknown function
UniRef90	UHGV-1365062_23	UniRef90_A0A356F3R1	179.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1365062_23	1304880.JAGB01000001_gene702	173.0	0	PFAM single-strand binding protein Primosomal replication protein n	N/A
Pfam	UHGV-1365062_23	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1365062_23	NF004476.0	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1365062_23	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1365062_23	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1365062_24	1284775.HMPREF1640_07240	78.2	0.0000000000000476	DnaD domain protein	N/A
COG	UHGV-1365062_24	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1365062_24	PF14297,TIGR01714,COG3756	N/A	N/A	N/A	N/A
KOfam	UHGV-1365062_25	K01160	49.9	0.000000000000099	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1365062_25	phrog_140	124.1	9.5e-37	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365062_25	UniRef90_A0A350TIB2	115.0	3.06e-30	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1365062_25	1123263.AUKY01000072_gene2102	107.0	5.93e-28	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1365062_25	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1365062_25	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1365062_25	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1365062_26	K07455	182.4	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1365062_26	phrog_148	198.6	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365062_26	UniRef90_UPI000F53F699	340.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-1365062_26	1408437.JNJN01000039_gene372	293.0	0	RecT family	N/A
Pfam	UHGV-1365062_26	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1365062_26	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1365062_26	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1365062_26	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1365062_27	phrog_674	150.6	9.80909e-45	N/A	unknown function
UniRef90	UHGV-1365062_27	UniRef90_A0A4P9C8L7	151.0	1.49e-40	N/A	N/A
eggNOG-mapper	UHGV-1365062_27	658655.HMPREF0988_02587	94.4	1.25e-19	N/A	N/A
Pfam	UHGV-1365062_27	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1365062_27	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1365062_28	phrog_434	145.9	3.29305e-43	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365062_28	UniRef90_A0A1W1YQ31	197.0	0	Putative phage-type endonuclease	N/A
eggNOG-mapper	UHGV-1365062_28	742765.HMPREF9457_02105	175.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-1365062_28	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1365062_28	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1365062_28	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1365062_28	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
Pfam	UHGV-1365062_33	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
KOfam	UHGV-1365062_34	K07497	42.0	0.000000000017	K07497; putative transposase	N/A
PHROG	UHGV-1365062_34	phrog_8463	91.1	1.2e-26	transposase	integration and excision
UniRef90	UHGV-1365062_34	UniRef90_A0A1Q6RLB1	367.0	0	Integrase catalytic domain-containing protein	N/A
eggNOG-mapper	UHGV-1365062_34	1123307.KB904367_gene1244	230.0	0	Transposase and inactivated derivatives	N/A
Pfam	UHGV-1365062_34	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
Pfam	UHGV-1365062_34	PF00665	N/A	N/A	Integrase core domain	rve
COG	UHGV-1365062_34	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-1365062_34	PF00665,PF13518,NF033577,COG2801	N/A	N/A	N/A	N/A
KOfam	UHGV-1365062_40	K00986	127.9	1.1e-37	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-1365062_40	phrog_1423	264.9	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365062_40	UniRef90_R6GXU6	618.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-1365062_40	742722.HMPREF9463_00262	322.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-1365062_40	icity0040	109.7	6.2e-32	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-1365062_40	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-1365062_40	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-1365062_40	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-1365062_41	phrog_30516	48.9	0.00000000000012	N/A	unknown function
UniRef90	UHGV-1365062_41	UniRef90_A0A6N7VN03	57.0	0.0000000732	Four helix bundle protein	N/A
structural_annotation	UHGV-1365062_41	PF05635,NF033474	N/A	N/A	N/A	N/A
PHROG	UHGV-1365062_43	phrog_37900	61.3	1.2e-17	N/A	unknown function
UniRef90	UHGV-1365062_43	UniRef90_A0A6A8VHM2	163.0	4.2039e-45	N/A	N/A
eggNOG-mapper	UHGV-1365062_43	693746.OBV_22720	97.4	1.95e-19	cellulose 1,4-beta-cellobiosidase activity	N/A
Pfam	UHGV-1365062_43	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-1365062_43	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-1365062_43	PF19789	N/A	N/A	N/A	N/A
KOfam	UHGV-1365062_44	K16617	42.1	0.0000000000052	COL13A; collagen type XIII alpha	N/A
PHROG	UHGV-1365062_44	phrog_32311	89.6	2.2e-26	N/A	unknown function
UniRef90	UHGV-1365062_44	UniRef90_UPI000E4B80F2	70.9	0.0000000000718	collagen-like protein	N/A
eggNOG-mapper	UHGV-1365062_44	33035.JPJF01000093_gene2235	90.1	4.86e-18	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-1365062_44	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-1365062_45	phrog_6468	62.7	3.1e-18	tail fiber protein; host specificity	tail
eggNOG-mapper	UHGV-1365062_45	272623.L77514	65.5	0.00000000328	N/A	N/A
PHROG	UHGV-1365062_46	phrog_3287	41.5	0.0000000000014	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1365062_46	445971.ANASTE_00721	204.0	0	N/A	N/A
structural_annotation	UHGV-1365062_46	PF11134,TIGR04312,COG3823	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365062_47	PF20387,NF038128,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-1365062_48	phrog_371	73.3	3.1e-21	major head protein	head and packaging
eggNOG-mapper	UHGV-1365062_48	1226322.HMPREF1545_03848	134.0	8.24e-34	N/A	N/A
structural_annotation	UHGV-1365062_48	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1365062_49	phrog_24113	85.8	3.9e-25	N/A	unknown function
eggNOG-mapper	UHGV-1365062_49	1226322.HMPREF1545_03847	70.5	0.000000000000137	N/A	N/A
structural_annotation	UHGV-1365062_49	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-1365062_55	phrog_22978	96.5	1.1e-28	N/A	unknown function
eggNOG-mapper	UHGV-1365062_55	748224.HMPREF9436_01406	89.0	0.0000000000000192	N/A	N/A
Pfam	UHGV-1365062_55	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal