UHGV-1365414 (vOTU-004353)

Viral Genome: UHGV-1365414

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1365414
vOTU ID	vOTU-004353
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0271872
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9463
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.29
Jumbo phage	No

Genome content
Genome length (bp)	40,529
GC content	26.74%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	59
CDS density	86%
Average CDS length (bps)	590.75
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1365414_2	phrog_36443	447.6	0	N/A	unknown function
UniRef90	UHGV-1365414_2	UniRef90_UPI001656337A	862.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1365414_2	411459.RUMOBE_00923	433.0	0	N/A	N/A
Pfam	UHGV-1365414_2	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
Pfam	UHGV-1365414_2	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-1365414_2	PF11839	N/A	N/A	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
NCBIFam	UHGV-1365414_2	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1365414_2	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-1365414_3	phrog_1401	109.2	2.6e-32	N/A	unknown function
UniRef90	UHGV-1365414_3	UniRef90_UPI000A16CD19	193.0	0	N/A	N/A
eggNOG-mapper	UHGV-1365414_3	1499683.CCFF01000014_gene3897	145.0	1.38729e-43	N/A	N/A
Pfam	UHGV-1365414_3	PF07761	N/A	N/A	N/A	DUF1617
structural_annotation	UHGV-1365414_3	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-1365414_4	phrog_2566	87.7	6.5e-26	N/A	unknown function
UniRef90	UHGV-1365414_4	UniRef90_A0A7V8IA60	73.2	0.00000000000000385	N/A	N/A
eggNOG-mapper	UHGV-1365414_4	1499683.CCFF01000014_gene3898	77.8	1.08e-17	N/A	N/A
UniRef90	UHGV-1365414_6	UniRef90_A0A1C6GX60	84.3	3.1e-16	Phage-related protein	N/A
eggNOG-mapper	UHGV-1365414_6	457396.CSBG_01058	80.9	0.000000000000001	phage tail	N/A
COG	UHGV-1365414_6	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1365414_6	PF20753,PF19266,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-1365414_7	K20478	84.5	1.7e-25	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-1365414_7	phrog_1533	434.0	0	tail length tape measure protein	tail
UniRef90	UHGV-1365414_7	UniRef90_A0A1C5YFW8	749.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-1365414_7	1151292.QEW_0351	441.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-1365414_7	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1365414_7	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1365414_7	COG5283	N/A	N/A	Phage-related tail protein	N/A
eggNOG-mapper	UHGV-1365414_8	1476973.JMMB01000007_gene1770	67.8	0.00000000000988	N/A	N/A
PHROG	UHGV-1365414_9	phrog_88	110.4	1.3e-32	major tail protein	tail
UniRef90	UHGV-1365414_9	UniRef90_A0A1C5YFI0	357.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1365414_9	1151292.QEW_0347	112.0	1.21e-27	Phage tail tube protein	N/A
NCBIFam	UHGV-1365414_9	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1365414_10	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-1365414_11	phrog_5	42.5	0.000000000017	tail completion or Neck1 protein	connector
UniRef90	UHGV-1365414_11	UniRef90_UPI00164E1F80	105.0	2.18e-26	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1365414_11	1499684.CCNP01000020_gene2283	56.6	0.0000000268	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1365414_11	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1365414_11	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1365414_12	phrog_11176	139.9	1.79997e-41	head-tail adaptor	connector
UniRef90	UHGV-1365414_12	UniRef90_A0A1C5YFF2	356.0	0	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-1365414_12	1423775.BAMN01000009_gene393	57.8	0.0000000375	N/A	N/A
Pfam	UHGV-1365414_12	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-1365414_12	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1365414_12	PF05521,PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1365414_13	phrog_749	61.4	1.4e-17	N/A	unknown function
UniRef90	UHGV-1365414_13	UniRef90_A0A1I3QJG6	101.0	7.06e-26	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1365414_13	349161.Dred_2603	63.9	0.00000000000675	N/A	N/A
PHROG	UHGV-1365414_14	phrog_10	104.6	1.1e-30	major head protein	head and packaging
UniRef90	UHGV-1365414_14	UniRef90_UPI00054252CF	465.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1365414_14	1211817.CCAT010000053_gene2132	321.0	0	Phage capsid family	N/A
Pfam	UHGV-1365414_14	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1365414_14	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1365414_14	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1365414_14	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1365414_15	K01358	156.6	0	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1365414_15	phrog_94	232.5	0	head maturation protease	head and packaging
UniRef90	UHGV-1365414_15	UniRef90_UPI000541F099	328.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-1365414_15	1232452.BAIB02000007_gene1626	244.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1365414_15	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1365414_15	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1365414_15	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1365414_16	phrog_12	95.4	4.8e-28	portal protein	head and packaging
UniRef90	UHGV-1365414_16	UniRef90_UPI000541FE59	494.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1365414_16	349161.Dred_2606	249.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1365414_16	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1365414_16	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1365414_16	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1365414_16	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1365414_17	phrog_9	276.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1365414_17	UniRef90_UPI000543D394	932.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-1365414_17	1235798.C817_02581	587.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-1365414_17	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1365414_17	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1365414_17	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1365414_17	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1365414_18	1415774.U728_1256	65.1	0.0000000000595	N/A	N/A
Pfam	UHGV-1365414_18	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
structural_annotation	UHGV-1365414_18	PF05119,PF06056,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-1365414_19	K07451	45.3	0.0000000000016	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1365414_19	phrog_119	72.3	6.8e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365414_19	UniRef90_A0A1C5YEA0	212.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1365414_19	1415774.U728_1257	115.0	4.63e-32	HNH nucleases	N/A
Pfam	UHGV-1365414_19	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1365414_19	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1365414_20	phrog_1315	47.3	0.00000000000032	N/A	unknown function
PHROG	UHGV-1365414_22	phrog_1558	122.4	2.9e-36	N/A	unknown function
UniRef90	UHGV-1365414_22	UniRef90_I2E8Y5	93.6	9.05e-21	Gp40	N/A
eggNOG-mapper	UHGV-1365414_22	1211817.CCAT010000007_gene1046	94.7	6.16e-22	N/A	N/A
structural_annotation	UHGV-1365414_22	PF08281,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1365414_23	phrog_824	156.9	0	N/A	unknown function
UniRef90	UHGV-1365414_23	UniRef90_UPI000543AA68	214.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1365414_23	397288.C806_00096	149.0	7.00649e-45	VRR_NUC	N/A
Pfam	UHGV-1365414_23	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1365414_23	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-1365414_29	phrog_1974	312.4	0	N/A	unknown function
UniRef90	UHGV-1365414_29	UniRef90_UPI001C114AB8	322.0	0	nucleoid-associated protein	N/A
eggNOG-mapper	UHGV-1365414_29	1292035.H476_1947	314.0	0	N/A	N/A
Pfam	UHGV-1365414_29	PF04245	N/A	N/A	37-kD nucleoid-associated bacterial protein	NA37
COG	UHGV-1365414_29	COG3081	N/A	N/A	dsDNA-binding nucleoid-associated protein YejK/NdpA	N/A
structural_annotation	UHGV-1365414_29	PF04245,MF_00730,NF001557,COG3081	N/A	N/A	N/A	N/A
PHROG	UHGV-1365414_31	phrog_463	104.0	9.6e-31	anti-repressor	transcription regulation
UniRef90	UHGV-1365414_31	UniRef90_UPI001655EF17	313.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-1365414_31	1292035.H476_1035	273.0	0	Phage regulatory protein	N/A
Pfam	UHGV-1365414_31	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-1365414_31	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-1365414_31	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-1365414_31	PF10552,PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
UniRef90	UHGV-1365414_32	UniRef90_A0A1C5VDZ3	48.5	0.0000022	Spo0E like sporulation regulatory protein	N/A
Pfam	UHGV-1365414_32	PF09388	N/A	N/A	Spo0E like sporulation regulatory protein	SpoOE-like
PHROG	UHGV-1365414_35	phrog_3584	128.9	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365414_35	UniRef90_A0A4P8IFK4	158.0	8.88423e-43	N/A	N/A
eggNOG-mapper	UHGV-1365414_35	999413.HMPREF1094_02028	146.0	5.03e-39	N/A	N/A
structural_annotation	UHGV-1365414_35	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-1365414_37	K18830	57.7	2.8e-16	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1365414_37	phrog_2967	46.1	0.00000000000091	transcriptional regulator	transcription regulation
UniRef90	UHGV-1365414_37	UniRef90_UPI0005E377B6	159.0	0	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1365414_37	1292035.H476_3453	158.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1365414_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1365414_37	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1365414_37	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1365414_39	UniRef90_UPI0011DD9A0D	76.3	0.0000000000039	DnaD domain protein	N/A
eggNOG-mapper	UHGV-1365414_39	1292035.H476_0276	164.0	5.60519e-45	N/A	N/A
PHROG	UHGV-1365414_43	phrog_4223	67.2	1.1e-19	N/A	unknown function
AcrCatalog	UHGV-1365414_43	cluster_2615	71.2	3.63e-20	NA	N/A
KOfam	UHGV-1365414_44	K18640	113.4	2.7e-33	parM, stbA; plasmid segregation protein ParM	N/A
PHROG	UHGV-1365414_44	phrog_691	123.8	1.3e-36	partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365414_44	UniRef90_A0A1C5VEM7	429.0	0	ALP_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1365414_44	1540257.JQMW01000009_gene2678	67.4	0.000000000576	cell division	N/A
Pfam	UHGV-1365414_44	PF17989	N/A	N/A	Actin like proteins N terminal domain	ALP_N
Pfam	UHGV-1365414_44	PF21522	N/A	N/A	Archaeal actin homologue MreB-like, C-terminal	MreB-like_C
COG	UHGV-1365414_44	COG0849	N/A	N/A	Cell division ATPase FtsA	N/A
structural_annotation	UHGV-1365414_44	PF06723,MF_02207,NF010498,COG1077	N/A	N/A	N/A	N/A
UniRef90	UHGV-1365414_47	UniRef90_T4VFT5	146.0	1.33123e-43	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-1365414_47	1292035.H476_3612	127.0	5.96e-37	N/A	N/A
Pfam	UHGV-1365414_47	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
KOfam	UHGV-1365414_48	K22299	40.3	0.000000000055	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
UniRef90	UHGV-1365414_48	UniRef90_A0A2P2BQG6	145.0	7.27274e-43	Helix-turn-helix domain	N/A
eggNOG-mapper	UHGV-1365414_48	997296.PB1_16114	114.0	4.16e-31	Protein conserved in bacteria	N/A
COG	UHGV-1365414_48	COG1426	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365414_48	PF13560,MF_00535,NF041951,COG1513	N/A	N/A	N/A	N/A
PHROG	UHGV-1365414_49	phrog_87	87.7	7.5e-26	metallo-protease	other
UniRef90	UHGV-1365414_49	UniRef90_A0A6N3BMK6	158.0	0	Metallopeptidase ImmA	N/A
eggNOG-mapper	UHGV-1365414_49	1128111.HMPREF0870_00983	119.0	1.56e-31	N/A	N/A
Pfam	UHGV-1365414_49	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1365414_49	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1365414_49	PF06114,MF_00745,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-1365414_51	phrog_2329	65.0	8.3e-19	N/A	unknown function
UniRef90	UHGV-1365414_51	UniRef90_UPI0018AB79C1	58.9	0.000000000249	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	N/A
structural_annotation	UHGV-1365414_51	PF04014,NF007312,COG2336	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1365414_53	1414720.CBYM010000071_gene3375	55.5	0.000000556	Helix-turn-helix domain of resolvase	N/A
Pfam	UHGV-1365414_53	PF02796	N/A	N/A	Helix-turn-helix domain of resolvase	HTH_7
UniRef90	UHGV-1365414_54	UniRef90_UPI001897657C	102.0	2.43e-25	N/A	N/A
eggNOG-mapper	UHGV-1365414_54	1499689.CCNN01000013_gene3057	70.5	0.000000000000108	N/A	N/A
Pfam	UHGV-1365414_54	PF17428	N/A	N/A	N/A	DUF5412
PHROG	UHGV-1365414_55	phrog_2649	68.1	1e-38	endolysin	lysis
UniRef90	UHGV-1365414_55	UniRef90_A0A6B4ZYC4	214.0	0	Bacteriocin	N/A
eggNOG-mapper	UHGV-1365414_55	1414720.CBYM010000071_gene3373	182.0	0	Putative peptidoglycan binding domain	N/A
Pfam	UHGV-1365414_55	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
Pfam	UHGV-1365414_55	PF09374	N/A	N/A	Predicted Peptidoglycan domain	PG_binding_3
Pfam	UHGV-1365414_55	PF15607	N/A	N/A	Bacterial toxin 44	Ntox44
COG	UHGV-1365414_55	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
PHROG	UHGV-1365414_56	phrog_351	42.3	0.00000000001	RNA polymerase sigma factor	transcription regulation
UniRef90	UHGV-1365414_56	UniRef90_A0A7V8IA06	151.0	1.34525e-43	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1365414_56	1292035.H476_0272	147.0	6.75426e-43	RNA polymerase sigma factor, sigma-70 family	N/A
Pfam	UHGV-1365414_56	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
NCBIFam	UHGV-1365414_56	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-1365414_56	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-1365414_56	PF07638,MF_00961,NF007224,COG1595	N/A	N/A	N/A	N/A
KOfam	UHGV-1365414_57	K01447	92.9	4.3e-27	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1365414_57	phrog_3088	222.7	0	amidase	lysis
UniRef90	UHGV-1365414_57	UniRef90_A0A1C5VEG3	243.0	0	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
eggNOG-mapper	UHGV-1365414_57	1499683.CCFF01000005_gene85	209.0	0	Ami_2	N/A
Pfam	UHGV-1365414_57	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1365414_57	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-1365414_57	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1365414_57	PF01510,PF08239,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-1365414_58	phrog_199	98.5	7e-29	holin	lysis
UniRef90	UHGV-1365414_58	UniRef90_UPI001E61EBDA	196.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-1365414_58	1280689.AUJC01000003_gene982	141.0	2.83006e-41	Bacteriophage holin family	N/A
Pfam	UHGV-1365414_58	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1365414_58	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1365414_58	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1365414_58	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A