UHGV-1365465 (vOTU-055785)

Viral Genome: UHGV-1365465

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1365465
vOTU ID	vOTU-055785
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0321260
Associated BioSample	SAMN00143579
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9816
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.66
Jumbo phage	No

Genome content
Genome length (bp)	54,731
GC content	48.19%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	94
CDS density	84%
Average CDS length (bps)	491.17
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1365465_3	phrog_434	45.1	0.0000000000016	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1365465_3	1408437.JNJN01000010_gene1241	48.1	0.00000465	N/A	N/A
PHROG	UHGV-1365465_7	phrog_14275	59.6	4.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-1365465_7	1280676.AUJO01000001_gene2313	65.5	0.000000000603	N/A	N/A
structural_annotation	UHGV-1365465_7	PF13157,MF_01537,NF007875,COG3123	N/A	N/A	N/A	N/A
KOfam	UHGV-1365465_9	K07741	44.3	0.0000000000053	antB; anti-repressor protein	N/A
PHROG	UHGV-1365465_9	phrog_63	124.4	1.1e-36	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1365465_9	UniRef90_A0A4Y5FE84	193.0	0	Antirepressor	N/A
eggNOG-mapper	UHGV-1365465_9	947981.E9LUT0_9CAUD	179.0	0	DNA binding	N/A
Pfam	UHGV-1365465_9	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-1365465_9	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
NCBIFam	UHGV-1365465_9	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
structural_annotation	UHGV-1365465_9	PF09669,PF03374,TIGR02681,COG3646,COG3645	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365465_10	PF19807,NF041793,COG4877	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365465_12	PF20075	N/A	N/A	N/A	N/A
KOfam	UHGV-1365465_13	K14060	128.2	8.3e-38	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1365465_13	phrog_125	153.2	1.4013e-45	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365465_13	UniRef90_A0A3D0LYX8	202.0	0	Resolvase	N/A
eggNOG-mapper	UHGV-1365465_13	641107.CDLVIII_3188	180.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1365465_13	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-1365465_13	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1365465_13	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365465_14	NF009949	N/A	N/A	N/A	N/A
PHROG	UHGV-1365465_15	phrog_3675	77.9	8.8e-23	N/A	unknown function
UniRef90	UHGV-1365465_15	UniRef90_UPI001D08FCA4	108.0	1.29e-28	YjcQ family protein	N/A
eggNOG-mapper	UHGV-1365465_15	1235802.C823_04879	112.0	6.51e-31	YjcQ protein	N/A
Pfam	UHGV-1365465_15	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-1365465_15	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
PHROG	UHGV-1365465_16	phrog_38	175.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1365465_16	UniRef90_UPI000419A6BC	430.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1365465_16	1121866.AUGK01000003_gene1428	430.0	0	chromosome segregation	N/A
COG	UHGV-1365465_16	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365465_16	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-1365465_18	phrog_64	151.5	4.2039e-45	portal protein	head and packaging
UniRef90	UHGV-1365465_18	UniRef90_A0A371ILT4	333.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1365465_18	1121866.AUGK01000003_gene1429	281.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1365465_18	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1365465_18	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1365465_19	1064535.MELS_1945	79.0	1.22e-18	N/A	N/A
PHROG	UHGV-1365465_22	phrog_29	179.8	0	major head protein	head and packaging
UniRef90	UHGV-1365465_22	UniRef90_A0A2Z4QBB4	373.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-1365465_22	476272.RUMHYD_01946	258.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1365465_22	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1365465_22	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1365465_23	UniRef90_R6N215	82.8	2.62e-18	Phage QLRG family putative DNA packaging	N/A
structural_annotation	UHGV-1365465_23	PF05135	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1365465_24	1298920.KI911353_gene2656	51.2	0.00000237	N/A	N/A
structural_annotation	UHGV-1365465_24	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1365465_25	397290.C810_01411	52.0	0.00000663	N/A	N/A
structural_annotation	UHGV-1365465_26	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-1365465_27	phrog_158	46.1	0.00000000000087	major tail protein	tail
UniRef90	UHGV-1365465_27	UniRef90_UPI001D087591	117.0	4.36e-31	phage tail protein	N/A
eggNOG-mapper	UHGV-1365465_27	1449343.JQLQ01000002_gene1514	55.1	0.000000206	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-1365465_27	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-1365465_28	UniRef90_A0A847YX95	71.6	0.000000000000072	N/A	N/A
eggNOG-mapper	UHGV-1365465_28	1123263.AUKY01000015_gene1618	62.4	0.0000000000488	N/A	N/A
Pfam	UHGV-1365465_28	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-1365465_28	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1365465_29	1121333.JMLH01000047_gene1011	76.3	7.76e-16	N/A	N/A
PHROG	UHGV-1365465_30	phrog_1535	159.5	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1365465_30	1121866.AUGK01000003_gene1437	184.0	1.26117e-44	phage tail tape measure protein	N/A
Pfam	UHGV-1365465_30	PF05746	N/A	N/A	DALR anticodon binding domain	DALR_1
COG	UHGV-1365465_30	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-1365465_31	phrog_1194	87.3	1.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-1365465_31	665956.HMPREF1032_03629	52.8	0.000000632	N/A	N/A
Pfam	UHGV-1365465_31	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1365465_31	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1365465_32	phrog_13879	192.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1365465_32	645991.Sgly_0356	140.0	6.84e-32	N/A	N/A
Pfam	UHGV-1365465_32	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1365465_32	PF14594,PF19789,PF03256,PF09134,NF033848,COG3500,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-1365465_33	phrog_18725	86.6	2.9e-25	N/A	unknown function
eggNOG-mapper	UHGV-1365465_33	1226322.HMPREF1545_00062	93.6	5.2e-22	N/A	N/A
UniRef90	UHGV-1365465_34	UniRef90_UPI0018835F0C	225.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-1365465_34	476272.RUMHYD_00002	113.0	3.02e-24	N/A	N/A
KOfam	UHGV-1365465_36	K07273	168.2	0	acm; lysozyme	N/A
PHROG	UHGV-1365465_36	phrog_291	141.2	8.70066e-42	endolysin	lysis
UniRef90	UHGV-1365465_36	UniRef90_UPI001D0EE7D8	267.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-1365465_36	748224.HMPREF9436_00154	265.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1365465_36	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1365465_36	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1365465_36	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1365465_37	phrog_1863	72.4	3.6e-21	N/A	unknown function
eggNOG-mapper	UHGV-1365465_37	718252.FP2_04900	138.0	8.35034e-42	N/A	N/A
PHROG	UHGV-1365465_38	phrog_15303	81.6	7.6e-24	N/A	unknown function
PHROG	UHGV-1365465_42	phrog_16490	103.8	6.4e-39	N/A	unknown function
eggNOG-mapper	UHGV-1365465_42	1408437.JNJN01000043_gene803	146.0	6.97e-40	N/A	N/A
eggNOG-mapper	UHGV-1365465_43	1408437.JNJN01000043_gene802	120.0	1.83e-33	N/A	N/A
eggNOG-mapper	UHGV-1365465_44	1408437.JNJN01000043_gene801	87.0	2.04e-18	N/A	N/A
structural_annotation	UHGV-1365465_46	PF07878	N/A	N/A	N/A	N/A
Pfam	UHGV-1365465_47	PF04448	N/A	N/A	N/A	DUF551
KOfam	UHGV-1365465_48	K03496	236.7	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1365465_48	phrog_164	170.2	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365465_48	UniRef90_A0A1G6FF50	209.0	0	Chromosome partitioning protein	N/A
eggNOG-mapper	UHGV-1365465_48	1408423.JHYA01000021_gene392	192.0	0	Cellulose biosynthesis protein BcsQ	N/A
Pfam	UHGV-1365465_48	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1365465_48	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1365465_48	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-1365465_50	phrog_4402	103.9	1.4e-30	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365465_50	UniRef90_A0A0H5Q331	292.0	0	Rep_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1365465_50	999413.HMPREF1094_04438	124.0	1.39e-29	Initiator Replication protein	N/A
Pfam	UHGV-1365465_50	PF01051	N/A	N/A	Initiator Replication protein, WH1	Rep3_N
Pfam	UHGV-1365465_50	PF21205	N/A	N/A	Initiator Rep protein, WH2	Rep3_C
COG	UHGV-1365465_50	COG5527	N/A	N/A	Protein involved in initiation of plasmid replication	N/A
structural_annotation	UHGV-1365465_50	PF01051,PF21205,NF038290,COG5527	N/A	N/A	N/A	N/A
UniRef90	UHGV-1365465_51	UniRef90_A0A2A7AM70	191.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1365465_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1365465_51	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1365465_51	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1365465_55	phrog_8	44.4	0.0000000000034	transcriptional regulator	transcription regulation
UniRef90	UHGV-1365465_55	UniRef90_UPI001D05D211	72.0	0.000000000000053	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1365465_55	693746.OBV_43290	63.5	0.0000000000326	addiction module antidote protein HigA	N/A
COG	UHGV-1365465_55	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-1365465_55	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1365465_56	phrog_1468	40.2	0.000000000037	transcriptional repressor	transcription regulation
UniRef90	UHGV-1365465_56	UniRef90_UPI001956DCC9	72.8	0.00000000000000125	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-1365465_56	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1365465_56	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1365465_57	K07741	103.5	4.3e-30	antB; anti-repressor protein	N/A
PHROG	UHGV-1365465_57	phrog_63	192.7	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1365465_57	UniRef90_A0A844D5R9	318.0	0	Phage regulatory protein/antirepressor Ant	N/A
eggNOG-mapper	UHGV-1365465_57	1423775.BAMN01000006_gene1075	243.0	0	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-1365465_57	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-1365465_57	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
NCBIFam	UHGV-1365465_57	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-1365465_57	COG3645	N/A	N/A	Phage antirepressor protein YoqD, KilAC domain	N/A
eggNOG-mapper	UHGV-1365465_58	397290.C810_01459	70.1	0.000000000000883	N/A	N/A
PHROG	UHGV-1365465_59	phrog_15946	85.8	5.6e-25	N/A	unknown function
eggNOG-mapper	UHGV-1365465_59	1041147.AUFB01000014_gene330	60.8	0.00000000568	N/A	N/A
structural_annotation	UHGV-1365465_60	PF10922	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365465_61	TIGR03826	N/A	N/A	N/A	N/A
Pfam	UHGV-1365465_64	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1365465_64	PF13443,TIGR02684,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365465_65	PF14143	N/A	N/A	N/A	N/A
PHROG	UHGV-1365465_66	phrog_38771	59.1	6e-17	N/A	unknown function
PHROG	UHGV-1365465_67	phrog_2872	238.1	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365465_67	UniRef90_A0A8J6JIF1	269.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1365465_67	754027.HMPREF9554_00709	212.0	0	N/A	N/A
Pfam	UHGV-1365465_67	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1365465_67	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1365465_68	phrog_18107	71.3	1.8e-20	N/A	unknown function
UniRef90	UHGV-1365465_68	UniRef90_UPI00058F46CC	92.0	5.91e-20	N/A	N/A
eggNOG-mapper	UHGV-1365465_68	903814.ELI_1274	154.0	2.8026e-45	N/A	N/A
structural_annotation	UHGV-1365465_68	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1365465_69	phrog_757	121.0	7.8e-36	DNA methyltransferase	other
UniRef90	UHGV-1365465_69	UniRef90_UPI001C00B13F	330.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1365465_69	748224.HMPREF9436_03069	226.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1365465_69	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-1365465_70	phrog_35094	93.8	2.2e-27	N/A	unknown function
eggNOG-mapper	UHGV-1365465_70	457424.BFAG_02409	118.0	7.68e-34	N/A	N/A
PHROG	UHGV-1365465_71	phrog_924	41.6	0.000000000019	N/A	unknown function
Pfam	UHGV-1365465_71	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1365465_71	PF04448	N/A	N/A	N/A	N/A
PHROG	UHGV-1365465_72	phrog_843	61.3	1e-17	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365465_72	UniRef90_UPI001159D907	116.0	1.11e-29	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-1365465_72	929506.CbC4_1203	108.0	2.37e-27	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
structural_annotation	UHGV-1365465_72	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365465_74	PF11998,COG5420	N/A	N/A	N/A	N/A
PHROG	UHGV-1365465_75	phrog_4068	45.2	0.0000000000022	N/A	unknown function
structural_annotation	UHGV-1365465_75	PF06657	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365465_77	MF_00085,NF003076,COG0231	N/A	N/A	N/A	N/A
Pfam	UHGV-1365465_78	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1365465_78	PF20331,COG5264	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365465_79	PF16677	N/A	N/A	N/A	N/A
UniRef90	UHGV-1365465_81	UniRef90_UPI0012DD33A2	312.0	0	restriction endonuclease subunit M	N/A
eggNOG-mapper	UHGV-1365465_81	596329.HMPREF0631_0252	219.0	0	restriction endonuclease	N/A
PADLOC	UHGV-1365465_81	MTase_II_00176	168.0	0	Type II methyltransferase	RM
COG	UHGV-1365465_81	COG1002	N/A	N/A	Type II restriction/modification system, endonuclease and methylase domains	N/A
structural_annotation	UHGV-1365465_88	NF041588	N/A	N/A	N/A	N/A
Pfam	UHGV-1365465_89	PF04448	N/A	N/A	N/A	DUF551
Pfam	UHGV-1365465_92	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-1365465_92	PF14354,TIGR03655,COG3478	N/A	N/A	N/A	N/A
PHROG	UHGV-1365465_93	phrog_15768	95.5	6.4e-28	N/A	unknown function
UniRef90	UHGV-1365465_93	UniRef90_A0A6N7WKT0	88.2	1.05e-17	N/A	N/A
eggNOG-mapper	UHGV-1365465_93	1189620.AJXL01000045_gene1040	83.2	3.63e-16	N/A	N/A
Pfam	UHGV-1365465_93	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1365465_93	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1365465_94	K02314	211.8	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1365465_94	phrog_19	218.7	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365465_94	UniRef90_UPI001CBC4B63	424.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1365465_94	1203606.HMPREF1526_01325	156.0	3.01e-40	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1365465_94	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1365465_94	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1365465_94	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A