UHGV-1365622 (vOTU-053756)

Viral Genome: UHGV-1365622

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1365622
vOTU ID	vOTU-053756
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0265812
Associated BioSample	SAMEA3951636
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9822
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.58
Jumbo phage	No

Genome content
Genome length (bp)	39,428
GC content	58.18%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	70
CDS density	95%
Average CDS length (bps)	532.54
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1365622_2	UniRef90_A0A521IRB0	53.1	0.00000458	Chitin-binding type-3 domain-containing protein	N/A
structural_annotation	UHGV-1365622_2	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-1365622_5	phrog_6918	95.2	4.5e-28	holin	lysis
UniRef90	UHGV-1365622_5	UniRef90_A0A316QCY7	103.0	1.73e-26	Holin	N/A
eggNOG-mapper	UHGV-1365622_5	1297617.JPJD01000020_gene301	101.0	1.21e-26	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1365622_5	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-1365622_5	PF09682,TIGR01673	N/A	N/A	N/A	N/A
UniRef90	UHGV-1365622_6	UniRef90_A0A358M2Y7	221.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1365622_6	525254.HMPREF0072_1273	220.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
COG	UHGV-1365622_6	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1365622_6	NF033743	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365622_7	PF13412,MF_00674,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-1365622_9	phrog_16490	51.0	0.000000000000029	N/A	unknown function
eggNOG-mapper	UHGV-1365622_9	641112.ACOK01000103_gene525	53.1	0.00000536	N/A	N/A
structural_annotation	UHGV-1365622_10	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-1365622_11	UniRef90_A0A8F0WD75	82.0	1.99e-16	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1365622_11	1378168.N510_03079	69.3	0.00000000000578	N/A	N/A
KOfam	UHGV-1365622_12	K06400	373.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1365622_12	phrog_95	361.4	0	integrase	integration and excision
UniRef90	UHGV-1365622_12	UniRef90_UPI00189960B8	506.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1365622_12	1235835.C814_00825	410.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1365622_12	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1365622_12	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1365622_12	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1365622_12	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1365622_12	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-1365622_13	UniRef90_A0A810PZB1	69.7	0.00000000000518	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1365622_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1365622_13	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1365622_13	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1365622_14	phrog_10292	74.2	1.1e-21	N/A	unknown function
UniRef90	UHGV-1365622_14	UniRef90_A0A416W984	95.9	9.04e-23	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1365622_14	537013.CLOSTMETH_02269	80.5	3.89e-17	TM2 domain	N/A
Pfam	UHGV-1365622_14	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-1365622_14	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-1365622_14	COG2314	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1365622_15	622312.ROSEINA2194_02761	59.7	0.0000000363	NOG18738 non supervised orthologous group	N/A
COG	UHGV-1365622_15	COG2169	N/A	N/A	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	N/A
structural_annotation	UHGV-1365622_15	PF02805	N/A	N/A	N/A	N/A
KOfam	UHGV-1365622_17	K22300	54.0	0.0000000000000039	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1365622_17	phrog_8	50.0	0.000000000000017	transcriptional regulator	transcription regulation
UniRef90	UHGV-1365622_17	UniRef90_A0A2U1BEG8	119.0	2.7e-32	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1365622_17	445972.ANACOL_03315	106.0	3.75e-28	N/A	N/A
PADLOC	UHGV-1365622_17	retron_type_VI_hth_cluster2_1	42.3	0.000000000015	N/A	Retron
Pfam	UHGV-1365622_17	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1365622_17	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1365622_17	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1365622_21	642492.Clole_0961	69.7	0.00000000000000757	N/A	N/A
structural_annotation	UHGV-1365622_21	PF12286	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365622_22	PF10548	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365622_24	NF041247	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365622_25	PF05082	N/A	N/A	N/A	N/A
PHROG	UHGV-1365622_28	phrog_36399	56.1	7.8e-16	N/A	unknown function
PHROG	UHGV-1365622_29	phrog_8470	263.3	0	N/A	unknown function
UniRef90	UHGV-1365622_29	UniRef90_UPI0002D9F0BD	304.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1365622_29	1007096.BAGW01000031_gene117	304.0	0	PcfJ-like protein	N/A
Pfam	UHGV-1365622_29	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1365622_29	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1365622_30	phrog_15609	228.6	0	N/A	unknown function
UniRef90	UHGV-1365622_30	UniRef90_UPI0002ED99F2	70.9	0.000000000598	N/A	N/A
eggNOG-mapper	UHGV-1365622_30	1501230.ET33_21155	121.0	5.03e-29	N/A	N/A
Pfam	UHGV-1365622_30	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-1365622_30	COG0188	N/A	N/A	DNA gyrase/topoisomerase IV, subunit A	N/A
structural_annotation	UHGV-1365622_30	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-1365622_32	phrog_3136	132.4	1.6e-39	N/A	unknown function
UniRef90	UHGV-1365622_32	UniRef90_UPI001C02A61B	124.0	4.83e-32	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1365622_32	394503.Ccel_3165	62.4	0.000000000487	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1365622_32	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1365622_32	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1365622_33	phrog_38832	49.0	0.000000000000076	N/A	unknown function
eggNOG-mapper	UHGV-1365622_33	665956.HMPREF1032_03087	58.5	0.0000000179	N/A	N/A
PHROG	UHGV-1365622_35	phrog_38832	70.7	1.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-1365622_35	665956.HMPREF1032_03087	89.4	2.34e-20	N/A	N/A
PHROG	UHGV-1365622_38	phrog_190	108.3	7.1e-32	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365622_38	UniRef90_UPI0006C2AC63	130.0	5.49e-36	N/A	N/A
eggNOG-mapper	UHGV-1365622_38	693746.OBV_25250	120.0	8.38e-33	N/A	N/A
Pfam	UHGV-1365622_38	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1365622_38	PF06356	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365622_40	PF10013	N/A	N/A	N/A	N/A
PHROG	UHGV-1365622_46	phrog_3584	118.7	4.2e-35	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1365622_46	537013.CLOSTMETH_02141	62.4	0.00000000451	N/A	N/A
structural_annotation	UHGV-1365622_46	PF21578,MF_00360	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1365622_47	1297617.JPJD01000059_gene2640	77.0	3.61e-16	N/A	N/A
structural_annotation	UHGV-1365622_47	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1365622_48	phrog_119	50.1	0.000000000000039	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365622_48	UniRef90_A0A174XSZ8	127.0	1.02e-35	Prophage LambdaBa04, GP54	N/A
eggNOG-mapper	UHGV-1365622_48	1235793.C809_01915	120.0	2.46e-33	HNH endonuclease	N/A
Pfam	UHGV-1365622_48	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1365622_48	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1365622_49	phrog_1066	130.0	8.7e-39	N/A	unknown function
eggNOG-mapper	UHGV-1365622_49	1382358.JHVN01000024_gene1703	123.0	1.36e-34	N/A	N/A
structural_annotation	UHGV-1365622_49	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-1365622_50	phrog_9	376.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-1365622_50	UniRef90_A0A1Y3W5R1	785.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1365622_50	1203606.HMPREF1526_00981	730.0	0	Terminase	N/A
Pfam	UHGV-1365622_50	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1365622_50	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1365622_50	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1365622_50	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1365622_51	phrog_12	176.6	0	portal protein	head and packaging
UniRef90	UHGV-1365622_51	UniRef90_UPI001898FCCE	500.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1365622_51	626523.GCWU000342_01027	499.0	0	Portal protein	N/A
Pfam	UHGV-1365622_51	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1365622_51	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1365622_51	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1365622_52	K01358	129.8	3e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1365622_52	phrog_94	197.7	0	head maturation protease	head and packaging
UniRef90	UHGV-1365622_52	UniRef90_UPI0018979DC8	202.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-1365622_52	1280689.AUJC01000011_gene1520	188.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1365622_52	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1365622_52	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1365622_52	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1365622_53	phrog_10	182.3	0	major head protein	head and packaging
UniRef90	UHGV-1365622_53	UniRef90_UPI00189AE5FE	407.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1365622_53	1280689.AUJC01000011_gene1521	389.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1365622_53	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1365622_53	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1365622_53	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1365622_53	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1365622_54	phrog_5223	45.7	0.00000000000087	neck protein	connector
UniRef90	UHGV-1365622_54	UniRef90_B6W9Y5	61.6	0.000000000257	Putative phage DNA packaging protein	N/A
eggNOG-mapper	UHGV-1365622_54	561177.ANHYDRO_01411	61.6	0.0000000000431	N/A	N/A
PHROG	UHGV-1365622_55	phrog_1951	75.4	5.3e-22	head-tail adaptor	connector
UniRef90	UHGV-1365622_55	UniRef90_UPI001B02B074	64.3	0.0000000000259	phage head closure protein	N/A
eggNOG-mapper	UHGV-1365622_55	1094508.Tsac_2422	56.2	0.00000000718	Phage head-tail joining protein	N/A
Pfam	UHGV-1365622_55	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-1365622_55	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-1365622_55	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1365622_55	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1365622_56	1487921.DP68_11350	60.5	0.000000000198	N/A	N/A
structural_annotation	UHGV-1365622_56	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1365622_57	phrog_5	42.6	0.000000000013	tail completion or Neck1 protein	connector
structural_annotation	UHGV-1365622_57	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1365622_58	phrog_88	87.1	2.3e-25	major tail protein	tail
UniRef90	UHGV-1365622_58	UniRef90_S0FUN2	112.0	1.05e-27	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1365622_58	1195236.CTER_5106	112.0	1.76e-28	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1365622_58	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-1365622_58	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365622_58	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365622_59	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1365622_60	phrog_8462	129.2	4.6e-38	tail length tape measure protein	tail
UniRef90	UHGV-1365622_60	UniRef90_A0A1M6L1P7	238.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-1365622_60	1195236.CTER_5104	230.0	0	nuclear chromosome segregation	N/A
COG	UHGV-1365622_60	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1365622_60	TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1365622_61	phrog_37549	77.8	7.9e-23	virion structural protein	head and packaging
UniRef90	UHGV-1365622_61	UniRef90_A0A3D0W045	230.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-1365622_61	1195236.CTER_5103	128.0	3.45e-28	N/A	N/A
structural_annotation	UHGV-1365622_61	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1365622_62	phrog_26795	143.1	5.00264e-43	N/A	unknown function
eggNOG-mapper	UHGV-1365622_62	1382315.JPOI01000001_gene271	142.0	2.24e-36	N/A	N/A
structural_annotation	UHGV-1365622_62	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365622_63	PF18614,MF_00085,NF003076,COG0231	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365622_65	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1365622_67	phrog_10898	278.0	0	N/A	unknown function
UniRef90	UHGV-1365622_67	UniRef90_A0A7U3NJT3	185.0	0	Putative Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1365622_67	717606.PaecuDRAFT_2136	74.7	0.00000000000121	S-layer homology domain	N/A
COG	UHGV-1365622_67	COG1520	N/A	N/A	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	N/A
structural_annotation	UHGV-1365622_67	PF19081,PF15418,MF_01905,NF032891,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365622_68	PF16408,NF033510	N/A	N/A	N/A	N/A
PHROG	UHGV-1365622_70	phrog_35892	74.7	4.9e-22	N/A	unknown function
UniRef90	UHGV-1365622_70	UniRef90_A0A843FMD8	177.0	0	Leucine-rich repeat domain-containing protein	N/A
eggNOG-mapper	UHGV-1365622_70	471875.RUMLAC_02240	153.0	2.42e-40	dockerin type I repeat-containing domain protein	N/A
Pfam	UHGV-1365622_70	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
COG	UHGV-1365622_70	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365622_70	PF14870,MF_01282,NF000022,COG4257	N/A	N/A	N/A	N/A