UHGV-1365941 (vOTU-055864)

Viral Genome: UHGV-1365941

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1365941
vOTU ID	vOTU-055864
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0272606
Associated BioSample	SAMN02334139
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9821
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.07
Jumbo phage	No

Genome content
Genome length (bp)	40,670
GC content	57.84%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	73
CDS density	94%
Average CDS length (bps)	522.82
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-1365941_3	PF08271	N/A	N/A	N/A	N/A
PHROG	UHGV-1365941_4	phrog_3584	113.3	1.8e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1365941_4	411470.RUMGNA_02047	62.0	0.0000000237	N/A	N/A
structural_annotation	UHGV-1365941_4	PF21578,MF_00360	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1365941_5	1297617.JPJD01000059_gene2640	80.9	1.14e-17	N/A	N/A
structural_annotation	UHGV-1365941_5	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1365941_6	phrog_119	48.6	0.000000000000095	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365941_6	UniRef90_A0A174XSZ8	124.0	4.32e-34	Prophage LambdaBa04, GP54	N/A
eggNOG-mapper	UHGV-1365941_6	1235793.C809_01915	119.0	1.79e-32	HNH endonuclease	N/A
Pfam	UHGV-1365941_6	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1365941_6	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1365941_7	phrog_1066	131.2	3.5e-39	N/A	unknown function
eggNOG-mapper	UHGV-1365941_7	1382358.JHVN01000024_gene1703	122.0	1.93e-34	N/A	N/A
structural_annotation	UHGV-1365941_7	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-1365941_8	phrog_9	377.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1365941_8	UniRef90_A0A1Y3W5R1	782.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1365941_8	1203606.HMPREF1526_00981	735.0	0	Terminase	N/A
Pfam	UHGV-1365941_8	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1365941_8	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1365941_8	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1365941_8	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1365941_9	phrog_12	180.7	0	portal protein	head and packaging
UniRef90	UHGV-1365941_9	UniRef90_C4GAS6	501.0	0	Putative phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-1365941_9	626523.GCWU000342_01027	501.0	0	Portal protein	N/A
Pfam	UHGV-1365941_9	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1365941_9	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1365941_9	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1365941_10	K01358	128.1	9.7e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1365941_10	phrog_94	198.2	0	head maturation protease	head and packaging
UniRef90	UHGV-1365941_10	UniRef90_UPI0018979DC8	202.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-1365941_10	1280689.AUJC01000011_gene1520	186.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1365941_10	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1365941_10	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1365941_10	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1365941_11	phrog_10	180.9	0	major head protein	head and packaging
UniRef90	UHGV-1365941_11	UniRef90_UPI00189AE5FE	404.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1365941_11	1280689.AUJC01000011_gene1521	390.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1365941_11	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1365941_11	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1365941_11	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1365941_11	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1365941_12	phrog_5223	45.7	0.00000000000082	neck protein	connector
UniRef90	UHGV-1365941_12	UniRef90_B6W9Y5	61.6	0.000000000257	Putative phage DNA packaging protein	N/A
eggNOG-mapper	UHGV-1365941_12	561177.ANHYDRO_01411	61.6	0.0000000000431	N/A	N/A
PHROG	UHGV-1365941_13	phrog_1951	75.1	6e-22	head-tail adaptor	connector
UniRef90	UHGV-1365941_13	UniRef90_UPI001B02B074	64.3	0.0000000000259	phage head closure protein	N/A
eggNOG-mapper	UHGV-1365941_13	1094508.Tsac_2422	54.7	0.0000000285	Phage head-tail joining protein	N/A
Pfam	UHGV-1365941_13	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-1365941_13	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-1365941_13	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1365941_13	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1365941_14	1487921.DP68_11350	60.1	0.000000000279	N/A	N/A
structural_annotation	UHGV-1365941_14	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1365941_15	phrog_5	46.0	0.0000000000011	tail completion or Neck1 protein	connector
Pfam	UHGV-1365941_15	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1365941_15	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1365941_16	phrog_88	82.6	4.8e-24	major tail protein	tail
UniRef90	UHGV-1365941_16	UniRef90_S0FUN2	115.0	6.67e-29	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1365941_16	1195236.CTER_5106	115.0	1.12e-29	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1365941_16	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-1365941_16	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365941_16	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365941_17	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1365941_18	phrog_33680	151.9	2.8026e-45	N/A	unknown function
UniRef90	UHGV-1365941_18	UniRef90_A0A1M6L1P7	263.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-1365941_18	498761.HM1_2969	249.0	0	nuclear chromosome segregation	N/A
COG	UHGV-1365941_18	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1365941_18	TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1365941_19	phrog_37549	79.0	4.8e-26	virion structural protein	head and packaging
UniRef90	UHGV-1365941_19	UniRef90_A0A3D0W045	228.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-1365941_19	1195236.CTER_5103	130.0	7.48e-29	N/A	N/A
structural_annotation	UHGV-1365941_19	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1365941_20	phrog_26795	130.6	5.7e-39	N/A	unknown function
UniRef90	UHGV-1365941_20	UniRef90_A0A5J6T4K8	137.0	1.57e-33	Minor tail protein	N/A
eggNOG-mapper	UHGV-1365941_20	1195236.CTER_5102	132.0	1.3e-32	N/A	N/A
structural_annotation	UHGV-1365941_20	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365941_21	PF18614,MF_00085,NF003076	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365941_22	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1365941_24	phrog_10898	278.8	0	N/A	unknown function
UniRef90	UHGV-1365941_24	UniRef90_A0A7U3NJT3	186.0	0	Putative Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1365941_24	717606.PaecuDRAFT_2136	75.1	0.000000000000891	S-layer homology domain	N/A
COG	UHGV-1365941_24	COG1520	N/A	N/A	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	N/A
structural_annotation	UHGV-1365941_24	PF19081,PF15418,MF_01905,NF032891,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365941_25	PF16408,NF033510	N/A	N/A	N/A	N/A
PHROG	UHGV-1365941_27	phrog_37900	316.9	0	N/A	unknown function
UniRef90	UHGV-1365941_27	UniRef90_UPI001C3EA4DF	333.0	0	N/A	N/A
eggNOG-mapper	UHGV-1365941_27	552398.HMPREF0866_03098	253.0	0	N/A	N/A
Pfam	UHGV-1365941_27	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-1365941_27	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-1365941_27	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-1365941_28	phrog_29409	42.0	0.000000000013	N/A	unknown function
PHROG	UHGV-1365941_33	phrog_6918	95.4	3.6e-28	holin	lysis
UniRef90	UHGV-1365941_33	UniRef90_A0A316QCY7	103.0	1.73e-26	Holin	N/A
eggNOG-mapper	UHGV-1365941_33	1297617.JPJD01000020_gene301	101.0	1.21e-26	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1365941_33	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-1365941_33	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-1365941_34	phrog_14030	143.3	1.3004e-42	N/A	unknown function
UniRef90	UHGV-1365941_34	UniRef90_R6LL81	252.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-1365941_34	1121866.AUGK01000003_gene1444	89.4	1.13e-17	amidase activity	N/A
COG	UHGV-1365941_34	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-1365941_35	PF13412,MF_00674,COG1342	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1365941_36	760568.Desku_0885	58.5	0.0000000509	N/A	N/A
structural_annotation	UHGV-1365941_36	PF14528,PF05204,MF_01420,TIGR00647,COG3780	N/A	N/A	N/A	N/A
PHROG	UHGV-1365941_38	phrog_25567	40.8	0.000000000026	N/A	unknown function
UniRef90	UHGV-1365941_38	UniRef90_UPI00164AED9E	90.9	2.14e-21	helix-turn-helix domain-containing protein	N/A
COG	UHGV-1365941_38	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-1365941_38	PF13560,NF040522,COG2944	N/A	N/A	N/A	N/A
UniRef90	UHGV-1365941_43	UniRef90_A0A7M1RTM1	76.6	0.0000000000000227	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1365941_43	1378168.N510_03079	71.2	0.00000000000107	N/A	N/A
KOfam	UHGV-1365941_44	K06400	377.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1365941_44	phrog_95	364.9	0	integrase	integration and excision
UniRef90	UHGV-1365941_44	UniRef90_UPI00189960B8	505.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1365941_44	1235835.C814_00825	411.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1365941_44	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1365941_44	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1365941_44	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1365941_44	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1365941_44	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-1365941_45	UniRef90_A0A810PZB1	73.6	0.000000000000177	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1365941_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1365941_45	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1365941_45	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1365941_46	phrog_10292	74.2	1e-21	N/A	unknown function
UniRef90	UHGV-1365941_46	UniRef90_A0A416W984	95.9	9.04e-23	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1365941_46	537013.CLOSTMETH_02269	80.5	3.89e-17	TM2 domain	N/A
Pfam	UHGV-1365941_46	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-1365941_46	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-1365941_46	COG2314	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1365941_47	622312.ROSEINA2194_02761	59.3	0.0000000495	NOG18738 non supervised orthologous group	N/A
COG	UHGV-1365941_47	COG2169	N/A	N/A	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	N/A
structural_annotation	UHGV-1365941_47	PF02805	N/A	N/A	N/A	N/A
KOfam	UHGV-1365941_49	K22300	54.7	0.0000000000000022	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1365941_49	phrog_4	50.0	0.000000000000071	transcriptional repressor	transcription regulation
UniRef90	UHGV-1365941_49	UniRef90_A0A2U1BEG8	119.0	1.9e-32	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1365941_49	1235797.C816_03553	107.0	7.27e-28	DNA-binding helix-turn-helix protein	N/A
PADLOC	UHGV-1365941_49	retron_type_VI_hth_cluster2_1	42.3	0.000000000014	N/A	Retron
Pfam	UHGV-1365941_49	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1365941_49	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1365941_49	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1365941_52	642492.Clole_0961	70.1	0.00000000000000533	N/A	N/A
structural_annotation	UHGV-1365941_52	PF12286	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365941_53	PF10548	N/A	N/A	N/A	N/A
PHROG	UHGV-1365941_58	phrog_36399	56.2	6.6e-16	N/A	unknown function
PHROG	UHGV-1365941_59	phrog_8470	261.0	0	N/A	unknown function
UniRef90	UHGV-1365941_59	UniRef90_UPI0002D9F0BD	307.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1365941_59	1007096.BAGW01000031_gene117	307.0	0	PcfJ-like protein	N/A
Pfam	UHGV-1365941_59	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1365941_59	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1365941_60	phrog_15609	230.7	0	N/A	unknown function
eggNOG-mapper	UHGV-1365941_60	1501230.ET33_21155	121.0	6.99e-29	N/A	N/A
Pfam	UHGV-1365941_60	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-1365941_60	COG0188	N/A	N/A	DNA gyrase/topoisomerase IV, subunit A	N/A
structural_annotation	UHGV-1365941_60	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
UniRef90	UHGV-1365941_61	UniRef90_UPI001BB4805C	82.4	9.4e-17	N/A	N/A
Pfam	UHGV-1365941_61	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1365941_61	PF04448	N/A	N/A	N/A	N/A
PHROG	UHGV-1365941_62	phrog_924	40.3	0.000000000014	N/A	unknown function
UniRef90	UHGV-1365941_62	UniRef90_A0A417H740	158.0	0	N/A	N/A
Pfam	UHGV-1365941_62	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-1365941_63	phrog_3136	134.3	4.00001e-40	N/A	unknown function
UniRef90	UHGV-1365941_63	UniRef90_UPI001C02A61B	135.0	1.43e-36	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1365941_63	394503.Ccel_3165	60.8	0.00000000178	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1365941_63	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1365941_63	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1365941_64	phrog_38832	64.2	5.7e-20	N/A	unknown function
eggNOG-mapper	UHGV-1365941_64	665956.HMPREF1032_03087	88.2	1.14e-19	N/A	N/A
PHROG	UHGV-1365941_66	phrog_2118	101.5	9.2e-30	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365941_66	UniRef90_A0A417HX51	207.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1365941_66	1511.CLOST_1546	116.0	4.28e-32	HNH endonuclease	N/A
Pfam	UHGV-1365941_66	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1365941_66	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1365941_66	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-1365941_68	phrog_190	101.0	1.1e-29	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365941_68	UniRef90_A0A845R8D4	128.0	6.53e-35	N/A	N/A
eggNOG-mapper	UHGV-1365941_68	1226322.HMPREF1545_00295	118.0	1.01e-31	N/A	N/A
Pfam	UHGV-1365941_68	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1365941_68	PF06356	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365941_70	TIGR00686	N/A	N/A	N/A	N/A