UHGV-1366036 (vOTU-055883)

Viral Genome: UHGV-1366036

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1366036
vOTU ID	vOTU-055883
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0260547
Associated BioSample	SAMN00086151
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9696
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.88
Jumbo phage	No

Genome content
Genome length (bp)	38,451
GC content	45.46%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	73
CDS density	88%
Average CDS length (bps)	461.43
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1366036_1	phrog_38	186.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1366036_1	UniRef90_A0A318EQM2	433.0	0	Putative phage terminase large subunit-like protein	N/A
eggNOG-mapper	UHGV-1366036_1	1123263.AUKY01000015_gene1608	483.0	0	chromosome segregation	N/A
NCBIFam	UHGV-1366036_1	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-1366036_1	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1366036_1	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
KOfam	UHGV-1366036_2	K14060	145.8	3.19496e-43	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1366036_2	phrog_125	151.2	5.60519e-45	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1366036_2	UniRef90_UPI00164CEC80	208.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1366036_2	1408423.JHYA01000001_gene988	180.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1366036_2	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1366036_2	PF13518	N/A	N/A	Helix-turn-helix domain	HTH_28
COG	UHGV-1366036_2	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1366036_2	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-1366036_3	UniRef90_A0A7C6Y3R2	70.9	0.0000000000000201	Helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-1366036_3	PF20075,TIGR03070	N/A	N/A	N/A	N/A
PHROG	UHGV-1366036_7	phrog_606	43.4	0.0000000000035	terminase small subunit	head and packaging
UniRef90	UHGV-1366036_7	UniRef90_UPI001D08D6B6	128.0	7.77e-35	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1366036_7	1235793.C809_00539	63.2	0.000000000238	N/A	N/A
Pfam	UHGV-1366036_7	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1366036_7	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-1366036_17	phrog_7704	43.0	0.0000000000073	N/A	unknown function
UniRef90	UHGV-1366036_17	UniRef90_U2R3A7	105.0	1.33e-27	N/A	N/A
eggNOG-mapper	UHGV-1366036_17	665950.HMPREF1025_02540	78.2	7.78e-17	N/A	N/A
Pfam	UHGV-1366036_17	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1366036_17	PF04448,NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-1366036_18	phrog_22543	43.0	0.0000000000062	N/A	unknown function
UniRef90	UHGV-1366036_19	UniRef90_A0A8J6PM04	95.1	2.19e-24	N/A	N/A
structural_annotation	UHGV-1366036_19	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-1366036_21	phrog_2245	90.6	1.5e-26	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-1366036_21	UniRef90_A0A4U9RLZ8	84.0	3.05e-19	N/A	N/A
eggNOG-mapper	UHGV-1366036_21	428125.CLOLEP_01814	175.0	0	COG NOG14118 non supervised orthologous group	N/A
structural_annotation	UHGV-1366036_21	PF12643,MF_01020,TIGR03188	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1366036_22	PF17399	N/A	N/A	N/A	N/A
KOfam	UHGV-1366036_26	K01160	47.5	0.00000000000045	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1366036_26	phrog_140	108.5	5.2e-32	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1366036_26	UniRef90_A0A1C6HG31	285.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-1366036_26	411461.DORFOR_00015	120.0	5.47e-33	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1366036_26	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1366036_26	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1366036_26	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1366036_27	K02315	124.6	1.1e-36	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1366036_27	phrog_50	122.5	4.3e-36	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1366036_27	UniRef90_A0A1C6HFV4	488.0	0	DNA replication protein	N/A
eggNOG-mapper	UHGV-1366036_27	445972.ANACOL_01829	264.0	0	N/A	N/A
Pfam	UHGV-1366036_27	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1366036_27	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1366036_27	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1366036_28	phrog_16304	60.5	6.4e-18	N/A	unknown function
UniRef90	UHGV-1366036_28	UniRef90_A0A1C6HII5	348.0	0	N/A	N/A
eggNOG-mapper	UHGV-1366036_28	203119.Cthe_2466	66.6	0.000000000289	N/A	N/A
Pfam	UHGV-1366036_28	PF19808	N/A	N/A	N/A	DUF6291
PHROG	UHGV-1366036_29	phrog_2113	49.3	0.000000000000056	N/A	unknown function
UniRef90	UHGV-1366036_29	UniRef90_A0A3A6EZF7	61.2	0.000000000849	HTH domain-containing protein	N/A
structural_annotation	UHGV-1366036_29	PF21715	N/A	N/A	N/A	N/A
KOfam	UHGV-1366036_30	K03111	145.6	4.59626e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1366036_30	phrog_44	147.1	8.54792e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1366036_30	UniRef90_A7VPP2	202.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1366036_30	428125.CLOLEP_00518	202.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1366036_30	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1366036_30	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1366036_30	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1366036_30	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1366036_30	PF00436,MF_00984,NF005242,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1366036_31	phrog_7566	86.7	1.5e-25	N/A	unknown function
eggNOG-mapper	UHGV-1366036_31	693746.OBV_25470	109.0	1.39e-29	N/A	N/A
PHROG	UHGV-1366036_32	phrog_1389	73.4	2.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-1366036_32	1347392.CCEZ01000060_gene3269	99.8	8.78e-26	N/A	N/A
structural_annotation	UHGV-1366036_32	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-1366036_33	phrog_14970	240.0	0	N/A	unknown function
UniRef90	UHGV-1366036_33	UniRef90_UPI00164BFA28	200.0	0	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-1366036_33	642492.Clole_0944	185.0	0	double-strand break repair protein	N/A
Pfam	UHGV-1366036_33	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-1366036_33	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1366036_33	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1366036_41	phrog_478	137.6	3.59994e-41	site-specific recombination directionality factor RDF	integration and excision
eggNOG-mapper	UHGV-1366036_41	665956.HMPREF1032_03082	194.0	0	N/A	N/A
KOfam	UHGV-1366036_45	K07482	45.1	0.0000000000013	K07482; transposase, IS30 family	N/A
PHROG	UHGV-1366036_45	phrog_11420	100.6	6.7e-30	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1366036_45	UniRef90_A0A412AWF5	166.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1366036_45	1519439.JPJG01000077_gene919	125.0	8.15e-37	Helix-turn-helix domain	N/A
Pfam	UHGV-1366036_45	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
structural_annotation	UHGV-1366036_45	PF04218	N/A	N/A	N/A	N/A
KOfam	UHGV-1366036_46	K07482	307.2	0	K07482; transposase, IS30 family	N/A
PHROG	UHGV-1366036_46	phrog_4646	381.4	0	transposase	integration and excision
UniRef90	UHGV-1366036_46	UniRef90_R6N1U4	654.0	0	Integrase catalytic domain-containing protein	N/A
eggNOG-mapper	UHGV-1366036_46	411459.RUMOBE_01705	385.0	0	COG COG2826 Transposase and inactivated derivatives, IS30 family	N/A
Pfam	UHGV-1366036_46	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
NCBIFam	UHGV-1366036_46	NF033563.0	N/A	N/A	IS30 family transposase	N/A
COG	UHGV-1366036_46	COG2826	N/A	N/A	Transposase and inactivated derivatives, IS30 family	N/A
structural_annotation	UHGV-1366036_46	PF03400,PF13384,NF033563,COG2826	N/A	N/A	N/A	N/A
UniRef90	UHGV-1366036_47	UniRef90_R6NCF0	119.0	3.62e-34	RHH_1 domain-containing protein	N/A
Pfam	UHGV-1366036_47	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-1366036_47	PF01402,NF040976,COG4710	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-1366036_48	cluster_160566	103.0	1.49e-33	NA	N/A
KOfam	UHGV-1366036_50	K22300	50.6	0.000000000000041	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-1366036_50	UniRef90_R6P7W0	156.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1366036_50	1235797.C816_02851	106.0	3.23e-29	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1366036_50	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1366036_50	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1366036_50	PF13560,NF041951,COG1813	N/A	N/A	N/A	N/A
KOfam	UHGV-1366036_51	K19370	42.0	0.0000000000084	DNAJC22; DnaJ homolog subfamily C member 22	N/A
PHROG	UHGV-1366036_51	phrog_10292	61.9	5e-18	N/A	unknown function
UniRef90	UHGV-1366036_51	UniRef90_R6NCF6	257.0	0	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1366036_51	537013.CLOSTMETH_02269	95.5	1.58e-23	TM2 domain	N/A
Pfam	UHGV-1366036_51	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-1366036_51	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-1366036_51	COG2314	N/A	N/A	N/A	N/A
PHROG	UHGV-1366036_52	phrog_1281	128.0	4e-38	N/A	unknown function
UniRef90	UHGV-1366036_52	UniRef90_A0A0X8KA51	170.0	0	N/A	N/A
eggNOG-mapper	UHGV-1366036_52	1000569.HMPREF1040_1612	159.0	0	N/A	N/A
Pfam	UHGV-1366036_52	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-1366036_52	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1366036_52	PF13274,COG3600	N/A	N/A	N/A	N/A
PHROG	UHGV-1366036_53	phrog_297	56.0	6.8e-16	holin	lysis
UniRef90	UHGV-1366036_53	UniRef90_A7VT88	183.0	0	Holin, phage phi LC3 family	N/A
eggNOG-mapper	UHGV-1366036_53	428125.CLOLEP_00169	183.0	0	COG COG5546 Small integral membrane protein	N/A
Pfam	UHGV-1366036_53	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1366036_53	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1366036_53	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1366036_53	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-1366036_54	phrog_1863	87.4	7.2e-26	N/A	unknown function
UniRef90	UHGV-1366036_54	UniRef90_A0A2K9NYV1	88.2	2e-21	Holin	N/A
eggNOG-mapper	UHGV-1366036_54	428125.CLOLEP_01781	124.0	1.92e-36	N/A	N/A
KOfam	UHGV-1366036_55	K07273	227.1	0	acm; lysozyme	N/A
PHROG	UHGV-1366036_55	phrog_291	176.6	0	endolysin	lysis
UniRef90	UHGV-1366036_55	UniRef90_A0A1G5HIV0	308.0	0	Glycosyl hydrolases family 25	N/A
eggNOG-mapper	UHGV-1366036_55	428125.CLOLEP_00561	323.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1366036_55	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1366036_55	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1366036_55	PF01183,TIGR04303,COG3757,COG5492	N/A	N/A	N/A	N/A
UniRef90	UHGV-1366036_56	UniRef90_R6NDD3	97.4	3.39e-25	Glycosyl hydrolase family 25	N/A
structural_annotation	UHGV-1366036_56	PF02796,COG2771	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1366036_57	742740.HMPREF9474_03518	59.7	0.00000000838	N/A	N/A
PHROG	UHGV-1366036_58	phrog_18725	45.2	0.0000000000011	N/A	unknown function
eggNOG-mapper	UHGV-1366036_58	665956.HMPREF1032_02705	101.0	1.1e-25	N/A	N/A
PHROG	UHGV-1366036_59	phrog_13879	275.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1366036_59	1304866.K413DRAFT_0774	59.7	0.00000332	N/A	N/A
structural_annotation	UHGV-1366036_59	PF03256,PF16466,PF13550,MF_00813,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1366036_60	phrog_1194	57.3	2.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-1366036_60	665956.HMPREF1032_03629	52.0	0.00000232	N/A	N/A
Pfam	UHGV-1366036_60	PF20458	N/A	N/A	N/A	DUF6711
KOfam	UHGV-1366036_61	K07496	439.4	0	K07496; putative transposase	N/A
PHROG	UHGV-1366036_61	phrog_506	443.2	0	transposase	integration and excision
UniRef90	UHGV-1366036_61	UniRef90_UPI001D01900D	651.0	0	IS200/IS605 family element RNA-guided endonuclease TnpB	N/A
eggNOG-mapper	UHGV-1366036_61	272563.CD630_25531	405.0	0	Helix-turn-helix domain	N/A
PADLOC	UHGV-1366036_61	V_U4	243.6	0	CAS-V-F; effector__SPE	CRISPR-CAS
Pfam	UHGV-1366036_61	PF12323	N/A	N/A	Helix-turn-helix domain	HTH_OrfB_IS605
Pfam	UHGV-1366036_61	PF01385	N/A	N/A	Probable transposase	OrfB_IS605
Pfam	UHGV-1366036_61	PF07282	N/A	N/A	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
NCBIFam	UHGV-1366036_61	NF038281.1	N/A	N/A	IS200/IS605 family element RNA-guided endonuclease TnpB	N/A
COG	UHGV-1366036_61	COG0675	N/A	N/A	Transposase	N/A
structural_annotation	UHGV-1366036_61	PF07282,PF01385,NF038281,COG0675	N/A	N/A	N/A	N/A
PHROG	UHGV-1366036_62	phrog_1535	156.8	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1366036_62	1121866.AUGK01000003_gene1437	223.0	0	phage tail tape measure protein	N/A
COG	UHGV-1366036_62	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
eggNOG-mapper	UHGV-1366036_63	1121333.JMLH01000047_gene1011	58.5	0.0000000017	N/A	N/A
UniRef90	UHGV-1366036_64	UniRef90_A0A843HLA7	118.0	3.98e-32	N/A	N/A
Pfam	UHGV-1366036_64	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-1366036_64	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1366036_65	1121333.JMLH01000047_gene1013	176.0	0	N/A	N/A
structural_annotation	UHGV-1366036_65	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1366036_66	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1366036_67	476272.RUMHYD_01963	71.6	0.00000000000027	N/A	N/A
eggNOG-mapper	UHGV-1366036_68	1232453.BAIF02000058_gene1630	69.7	0.000000000000157	N/A	N/A
UniRef90	UHGV-1366036_69	UniRef90_UPI001D07B1DB	141.0	1.13996e-41	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-1366036_69	936580.HMPREF1516_0716	59.7	0.000000000292	N/A	N/A
Pfam	UHGV-1366036_69	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-1366036_69	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1366036_71	phrog_422	263.3	0	major head protein	head and packaging
eggNOG-mapper	UHGV-1366036_71	645991.Sgly_0340	232.0	0	N/A	N/A
structural_annotation	UHGV-1366036_71	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1366036_73	phrog_64	159.7	0	portal protein	head and packaging
UniRef90	UHGV-1366036_73	UniRef90_A0A3D3Y472	323.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1366036_73	1123263.AUKY01000015_gene1609	284.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1366036_73	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1366036_73	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A