UHGV-1366045 (vOTU-055885)

Viral Genome: UHGV-1366045

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1366045
vOTU ID	vOTU-055885
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-4417979
Associated BioSample	SAMEA2738079
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9796
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.54
Jumbo phage	No

Genome content
Genome length (bp)	41,183
GC content	42.01%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	59
CDS density	93%
Average CDS length (bps)	650.03
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1366045_1	phrog_3724	101.3	9e-30	N/A	unknown function
Pfam	UHGV-1366045_1	PF05037	N/A	N/A	N/A	DUF669
PHROG	UHGV-1366045_2	phrog_124	94.7	1.2e-27	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
Pfam	UHGV-1366045_2	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1366045_2	PF13479,MF_00350,TIGR01618,COG2874	N/A	N/A	N/A	N/A
KOfam	UHGV-1366045_3	K16899	59.0	6.5e-17	addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]	N/A
PHROG	UHGV-1366045_3	phrog_1218	126.7	1.8e-37	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1366045_3	UniRef90_A0A5H2TJR6	129.0	1.34e-31	PDDEXK_1 domain-containing protein	N/A
Pfam	UHGV-1366045_3	PF12705	N/A	N/A	PD-(D/E)XK nuclease superfamily	PDDEXK_1
structural_annotation	UHGV-1366045_3	PF12705,TIGR00372,COG2887	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1366045_4	PF18339,NF037951,COG1862	N/A	N/A	N/A	N/A
KOfam	UHGV-1366045_5	K02335	396.3	0	polA; DNA polymerase I [EC:2.7.7.7]	N/A
PHROG	UHGV-1366045_5	phrog_17	366.7	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1366045_5	UniRef90_A0A249XYV4	351.0	0	DNA polymerase I	N/A
eggNOG-mapper	UHGV-1366045_5	1340829.S5Y5D9_9CAUD	257.0	0	DNA polymerase family A	N/A
PADLOC	UHGV-1366045_5	drt-cluster58	135.5	6.3e-40	DRT	DRT
Pfam	UHGV-1366045_5	PF01612	N/A	N/A	3'-5' exonuclease	DNA_pol_A_exo1
Pfam	UHGV-1366045_5	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
structural_annotation	UHGV-1366045_5	PF00476,PF01612,MF_04101,NF011539,COG0749	N/A	N/A	N/A	N/A
Pfam	UHGV-1366045_9	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
structural_annotation	UHGV-1366045_9	PF07463	N/A	N/A	N/A	N/A
KOfam	UHGV-1366045_10	K06919	41.1	0.000000000016	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-1366045_10	phrog_864	226.4	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1366045_10	UniRef90_A0A3A9BR41	234.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-1366045_10	411470.RUMGNA_00901	236.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-1366045_10	PF08708	N/A	N/A	Primase C terminal 1 (PriCT-1)	PriCT_1
Pfam	UHGV-1366045_10	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-1366045_10	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-1366045_10	PF02257	N/A	N/A	RFX DNA-binding domain	RFX_DNA_binding
NCBIFam	UHGV-1366045_10	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-1366045_10	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-1366045_10	PF19263,PF08706,PF03288,PF09250,MF_04000,TIGR01613,COG3378	N/A	N/A	N/A	N/A
PHROG	UHGV-1366045_11	phrog_2245	51.0	0.000000000000025	nucleoside triphosphate pyrophosphohydrolase	other
KOfam	UHGV-1366045_12	K01493	63.8	2.9e-18	comEB; dCMP deaminase [EC:3.5.4.12]	N/A
PHROG	UHGV-1366045_12	phrog_174	96.0	2.4e-28	dCMP deaminase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1366045_12	UniRef90_A0A2P6HIJ5	79.0	0.00000000000000135	Cytidine deaminase	N/A
eggNOG-mapper	UHGV-1366045_12	1232437.KL662011_gene1536	75.1	0.00000000000000685	PFAM CMP dCMP deaminase zinc-binding	N/A
PADLOC	UHGV-1366045_12	dCTPase	66.1	9.6e-19	N/A	N/A
Pfam	UHGV-1366045_12	PF14437	N/A	N/A	MafB19-like deaminase	MafB19-deam
COG	UHGV-1366045_12	COG2131	N/A	N/A	Deoxycytidylate deaminase	N/A
structural_annotation	UHGV-1366045_12	PF00383,MF_00972,TIGR02571,COG2131	N/A	N/A	N/A	N/A
PHROG	UHGV-1366045_16	phrog_2396	229.1	0	N/A	unknown function
UniRef90	UHGV-1366045_16	UniRef90_A0A0G4EY44	231.0	0	aGPT-Pplase1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1366045_16	29486.NJ56_14910	196.0	0	N/A	N/A
Pfam	UHGV-1366045_16	PF18723	N/A	N/A	5-hmdU DNA kinase, helical domain	HMUDK_hel
structural_annotation	UHGV-1366045_16	PF18723	N/A	N/A	N/A	N/A
KOfam	UHGV-1366045_17	K09777	70.9	1.6e-20	remA; extracellular matrix regulatory protein A	N/A
UniRef90	UHGV-1366045_17	UniRef90_UPI0003FFB3D9	79.3	1.2e-17	N/A	N/A
eggNOG-mapper	UHGV-1366045_17	1280685.AUKC01000009_gene2489	79.3	2.01e-18	N/A	N/A
Pfam	UHGV-1366045_17	PF04025	N/A	N/A	Extracellular matrix regulatory protein A-like	RemA-like
COG	UHGV-1366045_17	COG2052	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1366045_17	PF04025,MF_01503,NF003315,COG2052	N/A	N/A	N/A	N/A
PHROG	UHGV-1366045_23	phrog_6231	42.3	0.0000000000027	N/A	unknown function
eggNOG-mapper	UHGV-1366045_23	1035184.HMPREF1042_1345	61.6	0.000000000037	N/A	N/A
Pfam	UHGV-1366045_23	PF18756	N/A	N/A	Nucleotide modification associated domain 4	Nmad4
PHROG	UHGV-1366045_26	phrog_606	49.0	0.000000000000093	terminase small subunit	head and packaging
structural_annotation	UHGV-1366045_26	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1366045_27	K06909	340.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1366045_27	phrog_3717	144.0	7.00649e-45	terminase large subunit	head and packaging
UniRef90	UHGV-1366045_27	UniRef90_UPI0008366FD4	587.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1366045_27	1443122.Z958_p0035	504.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1366045_27	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1366045_27	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1366045_27	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1366045_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1366045_27	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1366045_28	phrog_64	157.0	0	portal protein	head and packaging
UniRef90	UHGV-1366045_28	UniRef90_UPI0008331C88	524.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1366045_28	1443122.Z958_p0036	147.0	7.11e-36	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1366045_28	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1366045_28	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1366045_30	phrog_21401	151.8	2.8026e-45	pilot protein for DNA ejection	tail
UniRef90	UHGV-1366045_30	UniRef90_A0A1S8T5Z7	157.0	8.15e-38	Phage Mu protein F like protein	N/A
eggNOG-mapper	UHGV-1366045_30	536233.CLO_0535	213.0	0	N/A	N/A
structural_annotation	UHGV-1366045_30	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1366045_33	phrog_2303	114.4	9.8e-34	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1366045_33	537874.B3GW02_9CAUD	70.5	0.00000000000344	N/A	N/A
structural_annotation	UHGV-1366045_33	PF10788,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-1366045_34	phrog_909	54.2	0.0000000000000025	major head protein	head and packaging
UniRef90	UHGV-1366045_34	UniRef90_A0A512PLH0	53.9	0.000000878	Putative structural protein-phage associated	N/A
eggNOG-mapper	UHGV-1366045_34	1158612.I580_01911	68.6	0.000000000000324	N/A	N/A
structural_annotation	UHGV-1366045_34	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-1366045_35	phrog_29	247.0	0	major head protein	head and packaging
UniRef90	UHGV-1366045_35	UniRef90_UPI00082C04A5	469.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-1366045_35	1158612.I580_01912	321.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1366045_35	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1366045_35	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1366045_36	phrog_3281	47.7	0.00000000000027	endonuclease VII	DNA, RNA and nucleotide metabolism
PHROG	UHGV-1366045_37	phrog_4020	48.3	0.00000000000015	N/A	unknown function
structural_annotation	UHGV-1366045_38	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1366045_39	1443125.Z962_p0058	72.4	0.00000000000000969	N/A	N/A
structural_annotation	UHGV-1366045_39	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1366045_40	phrog_7585	97.7	9.8e-29	N/A	unknown function
eggNOG-mapper	UHGV-1366045_40	1196322.A370_04060	95.9	9.18e-24	N/A	N/A
structural_annotation	UHGV-1366045_40	PF05657,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1366045_41	phrog_6686	148.3	4.06377e-44	tail tube protein	tail
UniRef90	UHGV-1366045_41	UniRef90_A0A1C6KI12	151.0	6.5805e-42	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1366045_41	1304880.JAGB01000002_gene2211	120.0	1.24e-31	N/A	N/A
structural_annotation	UHGV-1366045_41	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1366045_42	phrog_6280	135.2	2.6e-40	N/A	unknown function
UniRef90	UHGV-1366045_42	UniRef90_UPI0011579C94	109.0	5.66e-28	esterase	N/A
eggNOG-mapper	UHGV-1366045_42	445335.CBN_3078	100.0	5.95e-25	N/A	N/A
PHROG	UHGV-1366045_43	phrog_19074	512.7	0	N/A	unknown function
eggNOG-mapper	UHGV-1366045_43	411459.RUMOBE_01725	401.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1366045_43	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1366045_43	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1366045_43	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1366045_43	PF10145,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1366045_44	phrog_33	64.5	2.5e-18	distal tail protein Dit	tail
UniRef90	UHGV-1366045_44	UniRef90_A0A7X9C3E1	129.0	1.07e-31	Phage tail family protein	N/A
eggNOG-mapper	UHGV-1366045_44	1211817.CCAT010000079_gene1379	75.9	0.000000000000545	Phage tail protein	N/A
COG	UHGV-1366045_44	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1366045_44	PF20753,PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1366045_45	phrog_538	132.2	3.6e-39	minor tail protein	tail
UniRef90	UHGV-1366045_45	UniRef90_A0A1H9TH18	72.0	0.000000000249	Virus ReqiPepy6 Gp37-like protein	N/A
eggNOG-mapper	UHGV-1366045_45	903814.ELI_3194	63.5	0.0000000288	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-1366045_45	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-1366045_45	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1366045_46	phrog_5339	95.2	7.4e-28	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1366045_46	767817.Desgi_4425	74.7	0.000000000000413	N/A	N/A
PHROG	UHGV-1366045_48	phrog_1009	41.1	0.000000000022	N/A	unknown function
PHROG	UHGV-1366045_49	phrog_1129	69.4	3.6e-20	holin	lysis
UniRef90	UHGV-1366045_49	UniRef90_A0A2S0L5I2	97.8	6.94e-24	Holin	N/A
eggNOG-mapper	UHGV-1366045_49	1256908.HMPREF0373_00463	60.5	0.000000000271	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1366045_49	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
PHROG	UHGV-1366045_50	phrog_297	64.0	8.4e-19	holin	lysis
UniRef90	UHGV-1366045_50	UniRef90_J5UMU5	357.0	0	SH3 domain protein	N/A
eggNOG-mapper	UHGV-1366045_50	1232452.BAIB02000016_gene2519	69.3	0.000000000107	Papain-like cysteine protease AvrRpt2	N/A
Pfam	UHGV-1366045_50	PF13529	N/A	N/A	Peptidase_C39 like family	Peptidase_C39_2
Pfam	UHGV-1366045_50	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-1366045_50	COG0768	N/A	N/A	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	N/A
structural_annotation	UHGV-1366045_50	PF01510,PF18342,MF_04111,NF008758,NF040670,COG5632	N/A	N/A	N/A	N/A
KOfam	UHGV-1366045_52	K14440	86.2	1.2e-31	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-1366045_52	phrog_62	295.8	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1366045_52	UniRef90_A0A1V5E5D6	276.0	0	Helicase ATP-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1366045_52	887325.HMPREF0381_0366	210.0	0	SNF2 family N-terminal domain	N/A
PADLOC	UHGV-1366045_52	ZorD1_00007	73.0	3.9e-21	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-1366045_52	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1366045_52	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1366045_52	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1366045_52	PF00176,PF00271,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-1366045_53	phrog_93	42.1	0.0000000000096	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1366045_53	UniRef90_UPI000D0EC393	80.5	1.12e-17	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1366045_53	203119.Cthe_1646	67.8	0.000000000000221	pfam vrr-nuc	N/A
COG	UHGV-1366045_53	COG1591	N/A	N/A	Holliday junction resolvase Hjc, archaeal type	N/A
structural_annotation	UHGV-1366045_53	PF01870,MF_01490,NF002581,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-1366045_54	phrog_24386	105.1	5.6e-31	N/A	unknown function
eggNOG-mapper	UHGV-1366045_54	585394.RHOM_04760	112.0	2.47e-30	phosphatase activity	N/A
COG	UHGV-1366045_54	COG0561	N/A	N/A	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	N/A
structural_annotation	UHGV-1366045_54	TIGR01689,COG0241	N/A	N/A	N/A	N/A
KOfam	UHGV-1366045_56	K00560	132.3	3.8e-39	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	N/A
PHROG	UHGV-1366045_56	phrog_5131	168.2	0	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1366045_56	UniRef90_A0A4Y5FGW2	179.0	0	Thymidylate synthase	N/A
eggNOG-mapper	UHGV-1366045_56	1084719.G3MA60_9CAUD	145.0	2.9e-39	Thymidylate synthase	N/A
Pfam	UHGV-1366045_56	PF00303	N/A	N/A	Thymidylate synthase	Thymidylat_synt
structural_annotation	UHGV-1366045_56	PF00303,MF_01686,NF002497,COG0207	N/A	N/A	N/A	N/A
PHROG	UHGV-1366045_57	phrog_5781	81.6	4.4e-24	N/A	unknown function
eggNOG-mapper	UHGV-1366045_57	762968.HMPREF9441_02394	63.9	0.00000000116	N/A	N/A
Pfam	UHGV-1366045_57	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-1366045_57	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
PHROG	UHGV-1366045_58	phrog_800	107.7	8.1e-32	terminase small subunit	head and packaging
UniRef90	UHGV-1366045_58	UniRef90_A0A0F9M3C1	98.6	9.67e-19	aGPT-Pplase2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1366045_58	867696.E1XT70_BPSAV	92.8	1.23e-18	kinase activity	N/A
Pfam	UHGV-1366045_58	PF18748	N/A	N/A	5-hmdU DNA kinase	HMUDK_HMUD1