UHGV-1367083 (vOTU-002384)

Viral Genome: UHGV-1367083

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1367083
vOTU ID	vOTU-002384
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0261516
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9811
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.53
Jumbo phage	No

Genome content
Genome length (bp)	38,621
GC content	57.77%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	62
CDS density	95%
Average CDS length (bps)	589.16
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1367083_1	K06400	377.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1367083_1	phrog_95	363.7	0	integrase	integration and excision
UniRef90	UHGV-1367083_1	UniRef90_UPI00189960B8	500.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1367083_1	1235835.C814_00825	410.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1367083_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1367083_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1367083_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1367083_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1367083_1	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-1367083_2	UniRef90_A0A810PZB1	70.5	0.00000000000264	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1367083_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1367083_2	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1367083_2	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1367083_3	1121924.ATWH01000011_gene257	83.6	0.0000000000000081	TM2 domain	N/A
COG	UHGV-1367083_3	COG2314	N/A	N/A	N/A	N/A
KOfam	UHGV-1367083_5	K22300	54.7	0.0000000000000023	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1367083_5	phrog_4	50.0	0.000000000000073	transcriptional repressor	transcription regulation
UniRef90	UHGV-1367083_5	UniRef90_A0A2U1BEG8	119.0	1.9e-32	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1367083_5	1235797.C816_03553	107.0	7.27e-28	DNA-binding helix-turn-helix protein	N/A
PADLOC	UHGV-1367083_5	retron_type_VI_hth_cluster2_1	42.3	0.000000000014	N/A	Retron
Pfam	UHGV-1367083_5	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1367083_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1367083_5	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1367083_8	642492.Clole_0961	72.8	4.59e-16	N/A	N/A
structural_annotation	UHGV-1367083_8	PF12286	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367083_9	PF10548	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367083_13	PF05082	N/A	N/A	N/A	N/A
KOfam	UHGV-1367083_16	K00558	156.7	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1367083_16	phrog_363	244.8	0	DNA methyltransferase	other
UniRef90	UHGV-1367083_16	UniRef90_G4KRB8	348.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-1367083_16	693746.OBV_01900	348.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-1367083_16	MTase_II_00058	123.1	1.5e-36	Type II methyltransferase	RM
Pfam	UHGV-1367083_16	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1367083_16	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1367083_16	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1367083_16	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1367083_17	phrog_9298	63.0	3.5e-18	radical SAM domain protein	other
UniRef90	UHGV-1367083_17	UniRef90_A0A841L4D7	320.0	0	Radical SAM superfamily enzyme YgiQ (UPF0313 family)	N/A
eggNOG-mapper	UHGV-1367083_17	742817.HMPREF9449_01796	293.0	0	radical SAM domain protein	N/A
COG	UHGV-1367083_17	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-1367083_17	PF04055,MF_01864,TIGR04072,COG0621	N/A	N/A	N/A	N/A
Pfam	UHGV-1367083_18	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1367083_18	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-1367083_19	phrog_3136	128.4	2e-38	N/A	unknown function
UniRef90	UHGV-1367083_19	UniRef90_UPI001C00EDA4	124.0	5.44e-33	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1367083_19	1235793.C809_02645	64.3	0.00000000052	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-1367083_19	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-1367083_19	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1367083_19	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1367083_20	phrog_38832	54.7	0.0000000000000012	N/A	unknown function
eggNOG-mapper	UHGV-1367083_20	445972.ANACOL_00165	55.5	0.000000675	N/A	N/A
PHROG	UHGV-1367083_23	phrog_190	104.4	1.1e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367083_23	UniRef90_UPI0006C2AC63	130.0	5.37e-36	N/A	N/A
eggNOG-mapper	UHGV-1367083_23	1226322.HMPREF1545_00295	120.0	1.67e-32	N/A	N/A
Pfam	UHGV-1367083_23	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1367083_23	PF06356	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367083_25	PF10013	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367083_28	PF08271	N/A	N/A	N/A	N/A
PHROG	UHGV-1367083_29	phrog_3584	118.4	5.4e-35	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1367083_29	537013.CLOSTMETH_02141	66.6	0.000000000122	N/A	N/A
structural_annotation	UHGV-1367083_29	PF21578,MF_00360	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1367083_30	1297617.JPJD01000059_gene2640	83.6	1.02e-18	N/A	N/A
structural_annotation	UHGV-1367083_30	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1367083_31	phrog_119	48.9	0.000000000000083	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367083_31	UniRef90_A0A174XSZ8	124.0	3.05e-34	Prophage LambdaBa04, GP54	N/A
eggNOG-mapper	UHGV-1367083_31	1235793.C809_01915	118.0	2.54e-32	HNH endonuclease	N/A
Pfam	UHGV-1367083_31	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1367083_31	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1367083_32	phrog_1066	129.9	9.1e-39	N/A	unknown function
eggNOG-mapper	UHGV-1367083_32	1382358.JHVN01000024_gene1703	122.0	1.93e-34	N/A	N/A
structural_annotation	UHGV-1367083_32	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-1367083_33	phrog_9	382.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1367083_33	UniRef90_A0A1Y3W5R1	785.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1367083_33	1203606.HMPREF1526_00981	733.0	0	Terminase	N/A
Pfam	UHGV-1367083_33	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1367083_33	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1367083_33	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1367083_33	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1367083_34	phrog_12	178.4	0	portal protein	head and packaging
UniRef90	UHGV-1367083_34	UniRef90_UPI001898FCCE	503.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1367083_34	626523.GCWU000342_01027	501.0	0	Portal protein	N/A
Pfam	UHGV-1367083_34	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1367083_34	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1367083_34	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1367083_35	K01358	131.9	6.6e-39	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1367083_35	phrog_94	199.8	0	head maturation protease	head and packaging
UniRef90	UHGV-1367083_35	UniRef90_UPI0018979DC8	200.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-1367083_35	1280689.AUJC01000011_gene1520	183.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1367083_35	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1367083_35	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1367083_35	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1367083_36	phrog_10	172.0	0	major head protein	head and packaging
UniRef90	UHGV-1367083_36	UniRef90_UPI00189AE5FE	403.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1367083_36	1280689.AUJC01000011_gene1521	385.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1367083_36	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1367083_36	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1367083_36	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1367083_36	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1367083_37	phrog_5223	46.0	0.00000000000068	neck protein	connector
UniRef90	UHGV-1367083_37	UniRef90_B6W9Y5	63.2	0.000000000064	Putative phage DNA packaging protein	N/A
eggNOG-mapper	UHGV-1367083_37	561177.ANHYDRO_01411	63.2	0.0000000000107	N/A	N/A
PHROG	UHGV-1367083_38	phrog_1951	74.2	1.2e-21	head-tail adaptor	connector
UniRef90	UHGV-1367083_38	UniRef90_UPI001B02B074	65.1	0.0000000000129	phage head closure protein	N/A
eggNOG-mapper	UHGV-1367083_38	1094508.Tsac_2422	54.7	0.0000000285	Phage head-tail joining protein	N/A
Pfam	UHGV-1367083_38	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-1367083_38	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-1367083_38	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1367083_38	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1367083_39	1487921.DP68_11350	59.3	0.000000000557	N/A	N/A
structural_annotation	UHGV-1367083_39	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1367083_40	phrog_5	45.9	0.0000000000012	tail completion or Neck1 protein	connector
structural_annotation	UHGV-1367083_40	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1367083_41	phrog_88	84.6	1.2e-24	major tail protein	tail
UniRef90	UHGV-1367083_41	UniRef90_S0FUN2	114.0	9.42e-29	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1367083_41	1195236.CTER_5106	114.0	1.58e-29	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1367083_41	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-1367083_41	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367083_41	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367083_42	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1367083_43	phrog_33680	148.8	2.94273e-44	N/A	unknown function
UniRef90	UHGV-1367083_43	UniRef90_UPI00098F054B	219.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1367083_43	509191.AEDB02000020_gene3249	204.0	0	tail tape measure protein, TP901	N/A
COG	UHGV-1367083_43	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1367083_43	TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1367083_44	phrog_37549	79.6	4.6e-26	virion structural protein	head and packaging
UniRef90	UHGV-1367083_44	UniRef90_A0A3D0W045	232.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-1367083_44	1195236.CTER_5103	129.0	2.39e-28	N/A	N/A
structural_annotation	UHGV-1367083_44	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1367083_45	phrog_26795	132.7	1.9e-39	N/A	unknown function
UniRef90	UHGV-1367083_45	UniRef90_A0A5J6T4K8	135.0	8.12e-33	Minor tail protein	N/A
eggNOG-mapper	UHGV-1367083_45	1195236.CTER_5102	139.0	2.44e-35	N/A	N/A
structural_annotation	UHGV-1367083_45	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367083_46	PF18614,MF_00085,NF003076	N/A	N/A	N/A	N/A
KOfam	UHGV-1367083_47	K08131	88.3	3e-26	COL9A; collagen type IX alpha	N/A
PHROG	UHGV-1367083_47	phrog_8745	58.1	2.1e-24	tail fiber protein	tail
eggNOG-mapper	UHGV-1367083_47	1519439.JPJG01000060_gene1892	64.3	0.0000000827	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-1367083_47	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1367083_47	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
KOfam	UHGV-1367083_48	K03651	62.0	9.2e-18	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	N/A
PHROG	UHGV-1367083_48	phrog_7158	66.3	2.3e-19	N/A	unknown function
UniRef90	UHGV-1367083_48	UniRef90_A0A1E8F0N5	77.4	0.0000000000189	3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA	N/A
eggNOG-mapper	UHGV-1367083_48	411462.DORLON_00771	61.6	0.000000484	N/A	N/A
Pfam	UHGV-1367083_48	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
structural_annotation	UHGV-1367083_48	PF02368,PF09423,MF_00575,NF003743,NF005261,COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-1367083_49	phrog_30034	101.1	1.4e-29	N/A	unknown function
UniRef90	UHGV-1367083_49	UniRef90_A0A3D1XGA4	219.0	0	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1367083_49	411471.SUBVAR_06976	86.3	4.01e-19	N/A	N/A
Pfam	UHGV-1367083_49	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
PHROG	UHGV-1367083_52	phrog_6918	98.0	5.6e-29	holin	lysis
UniRef90	UHGV-1367083_52	UniRef90_A0A316QCY7	102.0	2.45e-26	Holin	N/A
eggNOG-mapper	UHGV-1367083_52	1297617.JPJD01000020_gene301	101.0	1.71e-26	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1367083_52	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-1367083_52	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-1367083_53	phrog_14030	143.3	1.49939e-42	N/A	unknown function
UniRef90	UHGV-1367083_53	UniRef90_R6LL81	241.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-1367083_53	1121866.AUGK01000003_gene1444	88.6	2.09e-17	amidase activity	N/A
COG	UHGV-1367083_53	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-1367083_54	PF13412,MF_00674,COG1342	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1367083_55	1160721.RBI_I00206	52.8	0.0000000151	N/A	N/A
structural_annotation	UHGV-1367083_55	PF10723	N/A	N/A	N/A	N/A
PHROG	UHGV-1367083_60	phrog_16490	60.6	3.4e-17	N/A	unknown function
eggNOG-mapper	UHGV-1367083_60	641112.ACOK01000103_gene525	57.0	0.000000234	N/A	N/A
structural_annotation	UHGV-1367083_61	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-1367083_62	UniRef90_A0A8F0WD75	82.0	1.99e-16	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1367083_62	1378168.N510_03079	68.9	0.000000000008	N/A	N/A