UHGV-1367235 (vOTU-056047)

Viral Genome: UHGV-1367235

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1367235
vOTU ID	vOTU-056047
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0272195
Associated BioSample	SAMEA2581953
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9778
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.5
Jumbo phage	No

Genome content
Genome length (bp)	40,658
GC content	52.74%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	66
CDS density	92%
Average CDS length (bps)	567.50
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1367235_3	phrog_14970	46.4	0.00000000000072	N/A	unknown function
COG	UHGV-1367235_3	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1367235_3	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1367235_4	phrog_72	45.3	0.0000000000014	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1367235_4	411471.SUBVAR_05829	139.0	2.58e-39	N/A	N/A
structural_annotation	UHGV-1367235_4	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-1367235_7	phrog_7566	87.0	1.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-1367235_7	411471.SUBVAR_05830	106.0	1.59e-28	N/A	N/A
KOfam	UHGV-1367235_8	K03111	149.1	3.92364e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1367235_8	phrog_44	152.2	2.8026e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367235_8	UniRef90_D4K451	217.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1367235_8	748224.HMPREF9436_00638	219.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1367235_8	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1367235_8	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1367235_8	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1367235_8	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1367235_8	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1367235_9	phrog_6969	55.7	5.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-1367235_9	748224.HMPREF9436_00735	158.0	8.12753e-44	N/A	N/A
Pfam	UHGV-1367235_9	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
Pfam	UHGV-1367235_9	PF19481	N/A	N/A	N/A	DUF6017
COG	UHGV-1367235_9	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1367235_9	PF19481,PF01978,MF_01819,TIGR01610,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-1367235_11	K03496	205.2	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1367235_11	phrog_164	153.2	1.4013e-45	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367235_11	UniRef90_A0A2A7B6H3	357.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-1367235_11	411471.SUBVAR_05839	228.0	0	AAA domain	N/A
Pfam	UHGV-1367235_11	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1367235_11	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1367235_11	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
UniRef90	UHGV-1367235_12	UniRef90_A0A355JDC2	94.7	1.11e-21	N/A	N/A
KOfam	UHGV-1367235_13	K03497	93.1	5e-27	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1367235_13	phrog_4715	117.2	1.3e-34	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367235_13	UniRef90_A0A2A7AMC5	296.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-1367235_13	411471.SUBVAR_05842	182.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-1367235_13	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1367235_13	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1367235_13	PF02195,MF_02015,TIGR03764,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367235_14	PF04545	N/A	N/A	N/A	N/A
PHROG	UHGV-1367235_17	phrog_3136	154.4	0	N/A	unknown function
UniRef90	UHGV-1367235_17	UniRef90_UPI001CBCD733	180.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1367235_17	693746.OBV_25380	63.9	0.000000000555	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1367235_17	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1367235_17	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1367235_20	phrog_8680	198.6	0	N/A	unknown function
UniRef90	UHGV-1367235_20	UniRef90_A0A844D688	444.0	0	N/A	N/A
eggNOG-mapper	UHGV-1367235_20	1423790.BN53_04265	181.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-1367235_20	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-1367235_20	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1367235_20	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-1367235_23	phrog_119	53.3	0.0000000000000037	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367235_23	UniRef90_A0A2A7B6I3	203.0	0	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-1367235_23	768710.DesyoDRAFT_1275	91.3	1.77e-22	HNH nucleases	N/A
COG	UHGV-1367235_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1367235_25	phrog_13845	56.0	4.8e-16	N/A	unknown function
eggNOG-mapper	UHGV-1367235_25	1399942.U3PDR2_9CAUD	66.6	0.0000000000016	N/A	N/A
structural_annotation	UHGV-1367235_25	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1367235_26	phrog_9	237.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-1367235_26	UniRef90_A0A2A7ALT4	1047.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1367235_26	610130.Closa_0741	630.0	0	Phage Terminase	N/A
Pfam	UHGV-1367235_26	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1367235_26	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1367235_26	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1367235_27	phrog_12	125.4	3.9e-37	portal protein	head and packaging
UniRef90	UHGV-1367235_27	UniRef90_A0A2A7B6S8	555.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1367235_27	349161.Dred_2606	261.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1367235_27	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1367235_27	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1367235_27	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1367235_27	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1367235_28	K01358	75.3	1e-21	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1367235_28	phrog_94	127.4	1.6e-37	head maturation protease	head and packaging
UniRef90	UHGV-1367235_28	UniRef90_UPI00111E41DA	138.0	1.08e-36	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-1367235_28	1232452.BAIB02000007_gene1626	130.0	1.58e-34	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1367235_28	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1367235_28	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1367235_28	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1367235_29	phrog_10	129.2	2.3e-38	major head protein	head and packaging
UniRef90	UHGV-1367235_29	UniRef90_A0A2A7B712	721.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1367235_29	1235792.C808_00086	443.0	0	Phage capsid family	N/A
Pfam	UHGV-1367235_29	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-1367235_29	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-1367235_29	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1367235_29	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1367235_29	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1367235_30	phrog_749	56.1	5.6e-16	N/A	unknown function
eggNOG-mapper	UHGV-1367235_30	1211817.CCAT010000053_gene2133	61.6	0.0000000000697	N/A	N/A
PHROG	UHGV-1367235_31	phrog_19734	95.0	6.7e-28	N/A	unknown function
UniRef90	UHGV-1367235_31	UniRef90_A0A0D8I708	78.2	5.3e-16	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-1367235_31	349161.Dred_2602	74.7	0.00000000000000194	N/A	N/A
structural_annotation	UHGV-1367235_31	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1367235_32	999413.HMPREF1094_02005	68.2	0.000000000000201	N/A	N/A
structural_annotation	UHGV-1367235_32	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-1367235_33	phrog_5	48.7	0.000000000000058	tail completion or Neck1 protein	connector
UniRef90	UHGV-1367235_33	UniRef90_A0A1C6FG30	115.0	9.71e-30	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1367235_33	908340.HMPREF9406_2573	111.0	6.24e-29	N/A	N/A
structural_annotation	UHGV-1367235_33	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1367235_34	phrog_88	94.0	1.6e-27	major tail protein	tail
UniRef90	UHGV-1367235_34	UniRef90_G9YSC5	108.0	4.49e-26	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1367235_34	33035.JPJF01000039_gene278	74.3	0.000000000000103	N/A	N/A
NCBIFam	UHGV-1367235_34	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1367235_34	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1367235_37	phrog_9959	97.2	9.3e-29	tail length tape measure protein	tail
UniRef90	UHGV-1367235_37	UniRef90_A0A2A7ALS3	713.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1367235_37	1492737.FEM08_12070	144.0	5.76e-33	tape measure	N/A
Pfam	UHGV-1367235_37	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1367235_37	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1367235_37	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1367235_37	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1367235_38	phrog_33	68.5	1.4e-19	distal tail protein Dit	tail
UniRef90	UHGV-1367235_38	UniRef90_A0A173Z1X4	144.0	6.92e-39	Phage-related protein	N/A
eggNOG-mapper	UHGV-1367235_38	748727.CLJU_c03670	91.7	1.33e-19	tail component	N/A
NCBIFam	UHGV-1367235_38	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1367235_38	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1367235_38	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1367235_39	phrog_1067	173.1	0	minor head protein	head and packaging
UniRef90	UHGV-1367235_39	UniRef90_A0A2A7AM44	705.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1367235_39	1123263.AUKY01000068_gene489	191.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1367235_39	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1367235_39	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1367235_39	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1367235_39	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1367235_41	phrog_16653	74.8	1.5e-22	hydrolase	other
eggNOG-mapper	UHGV-1367235_41	420247.Msm_0052	58.9	0.00000576	S53, subtilisin kexin sedolisin	N/A
COG	UHGV-1367235_41	COG1305	N/A	N/A	Transglutaminase-like enzyme, putative cysteine protease	N/A
KOfam	UHGV-1367235_42	K07273	150.0	1.96182e-44	acm; lysozyme	N/A
PHROG	UHGV-1367235_42	phrog_291	107.5	1.3e-31	endolysin	lysis
UniRef90	UHGV-1367235_42	UniRef90_A0A564U0D3	397.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-1367235_42	718252.FP2_04890	241.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1367235_42	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1367235_42	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1367235_42	PF01183,TIGR04053,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1367235_43	phrog_1863	76.8	1.4e-22	N/A	unknown function
eggNOG-mapper	UHGV-1367235_43	718252.FP2_04900	149.0	0	N/A	N/A
PHROG	UHGV-1367235_44	phrog_15303	86.1	2.7e-25	N/A	unknown function
structural_annotation	UHGV-1367235_45	PF07374,MF_00245,NF001072,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1367235_48	phrog_16490	102.5	8e-38	N/A	unknown function
eggNOG-mapper	UHGV-1367235_48	1408437.JNJN01000043_gene803	166.0	0	N/A	N/A
eggNOG-mapper	UHGV-1367235_49	1408437.JNJN01000043_gene802	120.0	1.29e-33	N/A	N/A
eggNOG-mapper	UHGV-1367235_50	1408437.JNJN01000043_gene801	96.3	6.3e-22	N/A	N/A
KOfam	UHGV-1367235_51	K14059	180.0	0	int; integrase	N/A
PHROG	UHGV-1367235_51	phrog_1	163.1	0	integrase	integration and excision
UniRef90	UHGV-1367235_51	UniRef90_A0A367GI93	228.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1367235_51	1507.HMPREF0262_00307	158.0	5.19041e-42	Phage integrase family	N/A
Pfam	UHGV-1367235_51	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1367235_51	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1367235_51	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1367235_52	phrog_1373	42.9	0.0000000000035	transcriptional regulator	transcription regulation
UniRef90	UHGV-1367235_52	UniRef90_A0A2A7AM70	183.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1367235_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1367235_52	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367235_55	COG5342	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367235_58	PF21441,TIGR04176,COG1846	N/A	N/A	N/A	N/A
UniRef90	UHGV-1367235_59	UniRef90_A0A2A7AM72	165.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1367235_59	1378168.N510_01712	65.1	0.0000000000409	N/A	N/A
structural_annotation	UHGV-1367235_59	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1367235_60	UniRef90_UPI000BEF0F65	70.9	0.00000000000000636	helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-1367235_60	PF21291,TIGR03070,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367235_66	PF10346,MF_00337,NF010671	N/A	N/A	N/A	N/A