UHGV-1367748 (vOTU-056124)

Viral Genome: UHGV-1367748

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1367748
vOTU ID	vOTU-056124
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0264295
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9811
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.63
Jumbo phage	No

Genome content
Genome length (bp)	39,180
GC content	52.11%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	66
CDS density	91%
Average CDS length (bps)	541.05
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1367748_1	phrog_3754	96.4	2.6e-28	N/A	unknown function
eggNOG-mapper	UHGV-1367748_1	476272.RUMHYD_01764	153.0	0	N/A	N/A
PHROG	UHGV-1367748_2	phrog_21718	98.4	2.2e-29	N/A	unknown function
eggNOG-mapper	UHGV-1367748_2	397290.C810_05210	85.1	6.86e-19	N/A	N/A
PHROG	UHGV-1367748_3	phrog_22984	82.6	3.5e-24	N/A	unknown function
PHROG	UHGV-1367748_4	phrog_16490	152.2	2.8026e-45	N/A	unknown function
eggNOG-mapper	UHGV-1367748_4	1408437.JNJN01000043_gene803	131.0	1.05e-34	N/A	N/A
PHROG	UHGV-1367748_5	phrog_20016	206.3	0	N/A	unknown function
UniRef90	UHGV-1367748_5	UniRef90_A0A285PT46	200.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1367748_5	1226322.HMPREF1545_00077	183.0	0	N/A	N/A
structural_annotation	UHGV-1367748_5	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1367748_6	476272.RUMHYD_01772	51.2	0.00000528	N/A	N/A
structural_annotation	UHGV-1367748_6	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1367748_7	1226322.HMPREF1545_00079	81.3	1.43e-18	N/A	N/A
KOfam	UHGV-1367748_8	K06400	298.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1367748_8	phrog_95	323.5	0	integrase	integration and excision
UniRef90	UHGV-1367748_8	UniRef90_A0A3A9ED02	385.0	0	Site-specific recombinase	N/A
eggNOG-mapper	UHGV-1367748_8	1378168.N510_03180	293.0	0	resolvase	N/A
Pfam	UHGV-1367748_8	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1367748_8	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1367748_8	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1367748_8	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1367748_8	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367748_9	PF13560,TIGR03070,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1367748_10	phrog_17658	60.1	4.3e-17	N/A	unknown function
structural_annotation	UHGV-1367748_10	PF18116	N/A	N/A	N/A	N/A
KOfam	UHGV-1367748_12	K22300	49.9	0.000000000000063	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1367748_12	phrog_8	41.4	0.000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-1367748_12	UniRef90_A0A1C5PSE5	111.0	2.68e-29	Predicted transcriptional regulator	N/A
eggNOG-mapper	UHGV-1367748_12	97138.C820_01960	107.0	3.23e-28	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1367748_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1367748_12	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1367748_12	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1367748_17	phrog_5070	96.6	1.7e-28	N/A	unknown function
UniRef90	UHGV-1367748_17	UniRef90_C5S0X2	79.3	9.91e-16	Phage related protein	N/A
eggNOG-mapper	UHGV-1367748_17	887929.HMP0721_1276	116.0	6.17e-31	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
COG	UHGV-1367748_17	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-1367748_18	PF00412	N/A	N/A	N/A	N/A
PHROG	UHGV-1367748_20	phrog_14970	252.3	0	N/A	unknown function
eggNOG-mapper	UHGV-1367748_20	411468.CLOSCI_00315	199.0	0	double-strand break repair protein	N/A
Pfam	UHGV-1367748_20	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-1367748_20	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1367748_20	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1367748_21	phrog_72	58.1	8.7e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367748_21	UniRef90_UPI000C7BF263	122.0	5.41e-32	recombination protein NinB	N/A
eggNOG-mapper	UHGV-1367748_21	445972.ANACOL_01825	131.0	2.76e-36	N/A	N/A
structural_annotation	UHGV-1367748_21	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1367748_22	phrog_7370	51.0	0.00000000000002	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367748_22	UniRef90_A0A3D3Y4P7	133.0	2.08e-38	HNH domain-containing protein	N/A
Pfam	UHGV-1367748_22	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1367748_22	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-1367748_23	K03111	138.0	9.70007e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1367748_23	phrog_44	140.3	1.10002e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367748_23	UniRef90_A0A2V2CEG7	152.0	8.40779e-45	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1367748_23	693746.OBV_19910	147.0	6.72623e-44	Single-strand binding protein family	N/A
Pfam	UHGV-1367748_23	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1367748_23	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1367748_23	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1367748_23	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1367748_23	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1367748_24	phrog_190	114.5	8.2e-34	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367748_24	UniRef90_UPI001C0F5697	150.0	7.00649e-45	N/A	N/A
eggNOG-mapper	UHGV-1367748_24	1236514.BAKL01000051_gene3708	95.9	4.23e-24	N/A	N/A
Pfam	UHGV-1367748_24	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1367748_24	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-1367748_25	phrog_16304	74.2	1.7e-21	N/A	unknown function
UniRef90	UHGV-1367748_25	UniRef90_UPI001E36D421	116.0	5.05e-29	N/A	N/A
eggNOG-mapper	UHGV-1367748_25	1139219.I569_00067	108.0	7.16e-26	DnaD domain protein	N/A
Pfam	UHGV-1367748_25	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1367748_25	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1367748_25	PF19808	N/A	N/A	N/A	N/A
Pfam	UHGV-1367748_26	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1367748_27	PF21291	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1367748_28	760568.Desku_0919	102.0	3.17e-24	N/A	N/A
structural_annotation	UHGV-1367748_28	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
Pfam	UHGV-1367748_31	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1367748_31	PF04448,NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-1367748_32	phrog_757	182.1	0	DNA methyltransferase	other
UniRef90	UHGV-1367748_32	UniRef90_A0A374BFJ7	327.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1367748_32	748224.HMPREF9436_03069	275.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1367748_32	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1367748_32	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-1367748_34	K00390	117.4	9.8e-35	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1367748_34	phrog_424	131.8	3.5e-39	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1367748_34	UniRef90_A0A1Y4LU27	414.0	0	Adenylyl-sulfate reductase	N/A
eggNOG-mapper	UHGV-1367748_34	1408437.JNJN01000032_gene2312	380.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1367748_34	BrxP_00001	74.0	5.6e-22	BrxP	BREX
Pfam	UHGV-1367748_34	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1367748_34	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1367748_34	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1367748_38	411459.RUMOBE_01385	63.5	0.00000000000793	N/A	N/A
KOfam	UHGV-1367748_39	K00571	102.0	8e-30	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1367748_39	phrog_498	425.9	0	DNA methyltransferase	other
UniRef90	UHGV-1367748_39	UniRef90_UPI0018A9A094	380.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1367748_39	226185.EF_2114	325.0	0	DNA methylase	N/A
PADLOC	UHGV-1367748_39	MTase_II_00015	346.7	0	Type II methyltransferase	RM
Pfam	UHGV-1367748_39	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-1367748_39	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1367748_39	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1367748_39	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-1367748_41	K06909	128.3	7.7e-38	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1367748_41	phrog_10250	173.7	0	N/A	unknown function
UniRef90	UHGV-1367748_41	UniRef90_A0A3D3Y0N9	637.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1367748_41	1226322.HMPREF1545_00043	582.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1367748_41	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1367748_41	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1367748_41	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1367748_41	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1367748_41	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1367748_42	phrog_64	184.8	0	portal protein	head and packaging
UniRef90	UHGV-1367748_42	UniRef90_UPI001AA0B7FF	526.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1367748_42	673376.F2VHW1_9CAUD	241.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1367748_42	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
PHROG	UHGV-1367748_43	phrog_2468	100.2	9.3e-30	head morphogenesis	head and packaging
UniRef90	UHGV-1367748_43	UniRef90_A0A1C7FSE6	352.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1367748_43	1280685.AUKC01000004_gene1632	102.0	8.77e-22	Phage Mu protein F like protein	N/A
Pfam	UHGV-1367748_43	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1367748_43	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367748_43	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1367748_44	phrog_5	74.8	1.4e-21	tail completion or Neck1 protein	connector
UniRef90	UHGV-1367748_44	UniRef90_A0A7X5E1T2	170.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1367748_44	1504822.CCNO01000013_gene284	88.6	5.23e-21	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1367748_44	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1367748_44	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1367748_44	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367748_45	PF18152	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367748_46	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1367748_47	phrog_544	178.2	0	major head protein	head and packaging
UniRef90	UHGV-1367748_47	UniRef90_A0A810PZM2	629.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1367748_47	1347392.CCEZ01000005_gene1236	274.0	0	N/A	N/A
Pfam	UHGV-1367748_47	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-1367748_47	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1367748_49	phrog_17977	54.2	0.0000000000000021	N/A	unknown function
UniRef90	UHGV-1367748_49	UniRef90_UPI00141211AB	75.5	0.00000000000000106	head-tail adaptor protein	N/A
structural_annotation	UHGV-1367748_49	TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-1367748_50	phrog_17405	47.1	0.00000000000036	head protein	head and packaging
UniRef90	UHGV-1367748_50	UniRef90_A0A415JI88	110.0	5.04e-29	N/A	N/A
structural_annotation	UHGV-1367748_50	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-1367748_51	phrog_885	96.9	1.7e-28	major tail protein	tail
UniRef90	UHGV-1367748_51	UniRef90_A0A843J9F0	163.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1367748_51	1111121.HMPREF1247_0789	189.0	0	N/A	N/A
structural_annotation	UHGV-1367748_51	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1367748_53	phrog_6900	220.9	0	tail length tape measure protein	tail
UniRef90	UHGV-1367748_53	UniRef90_A0A1B1IM37	144.0	1.92e-40	Putative tape measure protein	N/A
eggNOG-mapper	UHGV-1367748_53	1121334.KB911068_gene2299	160.0	2.41023e-43	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-1367748_53	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1367748_53	PF20155	N/A	N/A	N/A	N/A
KOfam	UHGV-1367748_54	K10421	43.6	0.0000000000016	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-1367748_54	phrog_1686	89.7	4.3e-35	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1367748_54	521003.COLINT_02352	90.9	8.54e-16	nuclear chromosome segregation	N/A
COG	UHGV-1367748_54	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-1367748_55	phrog_33	78.3	1.6e-22	distal tail protein Dit	tail
UniRef90	UHGV-1367748_55	UniRef90_A0A173Z1X4	112.0	1.35e-26	Phage-related protein	N/A
eggNOG-mapper	UHGV-1367748_55	203119.Cthe_1708	94.7	1.12e-20	Phage tail protein	N/A
COG	UHGV-1367748_55	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1367748_55	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1367748_56	phrog_1067	255.8	0	minor head protein	head and packaging
UniRef90	UHGV-1367748_56	UniRef90_UPI00164A5272	377.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1367748_56	1123263.AUKY01000068_gene489	304.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1367748_56	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1367748_56	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1367748_56	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1367748_56	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367748_57	PF05382,COG3738	N/A	N/A	N/A	N/A
PHROG	UHGV-1367748_60	phrog_1863	71.7	5.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-1367748_60	665956.HMPREF1032_03922	96.3	4.94e-25	N/A	N/A
PHROG	UHGV-1367748_61	phrog_443	60.7	3.7e-17	holin	lysis
UniRef90	UHGV-1367748_61	UniRef90_UPI000C852E5F	87.8	2.23e-21	holin	N/A
eggNOG-mapper	UHGV-1367748_61	397288.C806_00114	87.8	3.65e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1367748_61	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1367748_61	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-1367748_62	phrog_918	122.9	8.2e-37	N/A	unknown function
UniRef90	UHGV-1367748_62	UniRef90_UPI0015F4118C	127.0	2.06e-36	N/A	N/A
eggNOG-mapper	UHGV-1367748_62	1225795.K4I1W7_9CAUD	122.0	2.86e-35	N/A	N/A
Pfam	UHGV-1367748_62	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-1367748_62	PF19791	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367748_63	PF12802	N/A	N/A	N/A	N/A
KOfam	UHGV-1367748_64	K07273	183.1	0	acm; lysozyme	N/A
PHROG	UHGV-1367748_64	phrog_291	156.4	0	endolysin	lysis
UniRef90	UHGV-1367748_64	UniRef90_A0A6S6X8V6	178.0	0	Putative Lysozyme	N/A
eggNOG-mapper	UHGV-1367748_64	1415775.U729_2621	142.0	4.45e-37	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1367748_64	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1367748_64	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
COG	UHGV-1367748_64	COG3103	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367748_64	PF01183,PF19127,TIGR04035,TIGR04303,COG3757	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367748_65	PF13404,TIGR01636	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1367748_66	469378.Ccur_02570	61.6	0.00000000000419	N/A	N/A