UHGV-1368086 (vOTU-056177)

Viral Genome: UHGV-1368086

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1368086
vOTU ID	vOTU-056177
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0264186
Associated BioSample	SAMEA2581908
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9784
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.39
Jumbo phage	No

Genome content
Genome length (bp)	39,145
GC content	42.60%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	65
CDS density	92%
Average CDS length (bps)	555.05
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1368086_1	phrog_14105	85.8	4.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-1368086_1	485918.Cpin_3860	60.5	0.00000000454	Pentapeptide repeats (8 copies)	N/A
Pfam	UHGV-1368086_1	PF01469	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide_2
COG	UHGV-1368086_1	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
structural_annotation	UHGV-1368086_1	NF000318	N/A	N/A	N/A	N/A
PHROG	UHGV-1368086_4	phrog_9804	127.7	7.4e-38	N/A	unknown function
UniRef90	UHGV-1368086_4	UniRef90_A0A174S716	142.0	1.25e-39	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-1368086_4	585394.RHOM_14005	128.0	5e-35	Loader and inhibitor of phage G40P	N/A
AcrCatalog	UHGV-1368086_4	cluster_137185	108.0	4.76e-32	NA	N/A
Pfam	UHGV-1368086_4	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1368086_4	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1368086_5	phrog_2514	59.7	3.5e-17	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1368086_5	272626.lin2412	77.0	0.000000000000181	Replication initiation and membrane attachment	N/A
COG	UHGV-1368086_5	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1368086_5	PF01978,NF033788,COG1846	N/A	N/A	N/A	N/A
KOfam	UHGV-1368086_6	K01160	40.0	0.000000000091	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1368086_6	phrog_1682	88.0	1.2e-25	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1368086_6	UniRef90_R6DSN2	210.0	0	Crossover junction endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1368086_6	1120985.AUMI01000019_gene2247	124.0	1.1e-34	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-1368086_6	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1368086_6	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1368086_7	K03111	137.9	1.10001e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1368086_7	phrog_44	129.3	2.9e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1368086_7	UniRef90_R6E0A2	239.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1368086_7	1120998.AUFC01000019_gene325	200.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1368086_7	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1368086_7	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1368086_7	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1368086_7	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1368086_7	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1368086_8	phrog_7566	101.0	5.9e-30	N/A	unknown function
eggNOG-mapper	UHGV-1368086_8	1118057.CAGX01000020_gene1648	76.6	3.18e-17	N/A	N/A
PHROG	UHGV-1368086_9	phrog_1389	68.0	1.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-1368086_9	883156.HMPREF9282_01223	74.3	8.51e-16	N/A	N/A
structural_annotation	UHGV-1368086_9	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-1368086_10	phrog_434	112.6	2.9e-33	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1368086_10	UniRef90_UPI001CF8591D	296.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-1368086_10	1122146.AUHP01000010_gene1042	201.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-1368086_10	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
COG	UHGV-1368086_10	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1368086_10	PF10926,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-1368086_11	phrog_155	149.3	2.38221e-44	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1368086_11	UniRef90_UPI001CF85C41	229.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-1368086_11	1462527.CCDM010000010_gene489	184.0	0	ERF superfamily	N/A
Pfam	UHGV-1368086_11	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1368086_11	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1368086_13	phrog_2113	48.0	0.00000000000013	N/A	unknown function
Pfam	UHGV-1368086_13	PF08279	N/A	N/A	HTH domain	HTH_11
PHROG	UHGV-1368086_14	phrog_22529	116.6	1.1e-34	N/A	unknown function
UniRef90	UHGV-1368086_14	UniRef90_R6EKT9	158.0	0	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-1368086_14	1410622.JNKY01000010_gene1282	95.5	2.53e-21	3D domain	N/A
Pfam	UHGV-1368086_14	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-1368086_14	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-1368086_14	PF06725,MF_02071,NF040677,COG3584	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1368086_16	NF040990	N/A	N/A	N/A	N/A
KOfam	UHGV-1368086_17	K23779	47.2	0.00000000000047	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-1368086_17	phrog_8	53.9	0.0000000000000043	transcriptional regulator	transcription regulation
UniRef90	UHGV-1368086_17	UniRef90_A0A8G0M6K7	67.8	0.000000000000127	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1368086_17	12417.Q9T1J3_9CAUD	55.8	0.00000000285	sequence-specific DNA binding	N/A
Pfam	UHGV-1368086_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1368086_17	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1368086_19	phrog_8	57.3	3.7e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1368086_19	UniRef90_A0A7G9GB40	89.7	9.39e-21	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1368086_19	1158604.I591_00498	69.3	0.000000000000204	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1368086_19	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1368086_19	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1368086_19	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1368086_20	phrog_20936	45.1	0.0000000000016	N/A	unknown function
UniRef90	UHGV-1368086_20	UniRef90_UPI00164BB8FD	52.8	0.000000156	ImmA/IrrE family metallo-endopeptidase	N/A
Pfam	UHGV-1368086_20	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-1368086_20	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-1368086_21	K06882	66.6	3.3e-19	N/A	N/A
PHROG	UHGV-1368086_21	phrog_14556	40.7	0.000000000018	N/A	unknown function
eggNOG-mapper	UHGV-1368086_21	645991.Sgly_2993	71.6	0.0000000000363	cell wall binding repeat 2	N/A
COG	UHGV-1368086_21	COG2247	N/A	N/A	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	N/A
KOfam	UHGV-1368086_22	K14059	149.0	5.60519e-44	int; integrase	N/A
PHROG	UHGV-1368086_22	phrog_1	171.6	0	integrase	integration and excision
UniRef90	UHGV-1368086_22	UniRef90_A0A845QLR8	343.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1368086_22	936375.HMPREF1152_1040	218.0	0	Phage integrase family	N/A
Pfam	UHGV-1368086_22	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1368086_22	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1368086_22	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1368086_24	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1368086_25	phrog_16490	44.9	0.0000000000004	N/A	unknown function
eggNOG-mapper	UHGV-1368086_25	641112.ACOK01000103_gene525	93.6	7.05e-21	N/A	N/A
PHROG	UHGV-1368086_27	phrog_21718	54.8	0.0000000000000013	N/A	unknown function
eggNOG-mapper	UHGV-1368086_27	397290.C810_05210	52.8	0.000000436	N/A	N/A
UniRef90	UHGV-1368086_28	UniRef90_A0A843HPX3	87.8	1.55e-21	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-1368086_28	1235790.C805_00057	51.2	0.0000000789	N/A	N/A
structural_annotation	UHGV-1368086_28	PF13404,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1368086_29	phrog_6918	51.4	0.000000000000015	holin	lysis
Pfam	UHGV-1368086_29	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UniRef90	UHGV-1368086_32	UniRef90_A0A7X6X882	158.0	4.2039e-45	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-1368086_32	552396.HMPREF0863_01358	118.0	6.53e-28	CHAP domain	N/A
Pfam	UHGV-1368086_32	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-1368086_32	COG3942	N/A	N/A	Surface antigen	N/A
structural_annotation	UHGV-1368086_32	COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-1368086_33	phrog_9854	119.6	1.8e-35	N/A	unknown function
UniRef90	UHGV-1368086_33	UniRef90_A0A0Q7SG37	248.0	0	LPD38 domain-containing protein	N/A
eggNOG-mapper	UHGV-1368086_33	1121091.AUMP01000003_gene2597	251.0	0	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis	N/A
Pfam	UHGV-1368086_33	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-1368086_33	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
structural_annotation	UHGV-1368086_33	PF18857,PF18798	N/A	N/A	N/A	N/A
Pfam	UHGV-1368086_34	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
structural_annotation	UHGV-1368086_34	TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-1368086_39	phrog_3287	82.1	3.4e-24	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1368086_39	1408437.JNJN01000002_gene1390	244.0	0	N/A	N/A
structural_annotation	UHGV-1368086_39	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1368086_41	PF07100,COG4288	N/A	N/A	N/A	N/A
PHROG	UHGV-1368086_42	phrog_267	92.8	3.4e-27	major head protein	head and packaging
UniRef90	UHGV-1368086_42	UniRef90_A0A7C6CNA9	160.0	3.64338e-44	P22 coat protein-protein 5 domain protein	N/A
eggNOG-mapper	UHGV-1368086_42	665956.HMPREF1032_03906	326.0	0	P22 coat protein-protein 5 domain protein	N/A
structural_annotation	UHGV-1368086_42	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1368086_44	phrog_156	74.0	2.4e-22	portal protein	head and packaging
eggNOG-mapper	UHGV-1368086_44	1232449.BAHV02000016_gene1822	408.0	0	N/A	N/A
structural_annotation	UHGV-1368086_44	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1368086_46	phrog_38	345.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1368086_46	UniRef90_A0A845QMQ7	664.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1368086_46	755731.Clo1100_2438	459.0	0	TIGRFAM Phage	N/A
Pfam	UHGV-1368086_46	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1368086_46	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1368086_46	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-1368086_46	COG5362	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1368086_46	PF17289,PF05876,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1368086_49	NF040976	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1368086_54	PF05263,TIGR01636	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1368086_55	PF18066	N/A	N/A	N/A	N/A
PHROG	UHGV-1368086_57	phrog_25385	71.5	9.9e-21	N/A	unknown function
eggNOG-mapper	UHGV-1368086_57	476272.RUMHYD_03328	70.9	0.0000000000000545	N/A	N/A
PHROG	UHGV-1368086_58	phrog_1485	93.6	2.4e-27	N/A	unknown function
UniRef90	UHGV-1368086_58	UniRef90_A0A3S8RPB6	112.0	5.74e-30	N/A	N/A
eggNOG-mapper	UHGV-1368086_58	1415774.U728_1099	81.3	2.4e-18	N/A	N/A
Pfam	UHGV-1368086_58	PF07659	N/A	N/A	Nucleotide modification associated domain 1	DUF1599
structural_annotation	UHGV-1368086_58	PF07659	N/A	N/A	N/A	N/A
PHROG	UHGV-1368086_60	phrog_10714	66.0	5.2e-19	N/A	unknown function
UniRef90	UHGV-1368086_60	UniRef90_R5R2P7	73.9	0.00000000000000457	DNA polymerase II large subunit	N/A
eggNOG-mapper	UHGV-1368086_60	537007.BLAHAN_05460	100.0	2.96e-26	N/A	N/A
PHROG	UHGV-1368086_64	phrog_6721	297.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1368086_64	665956.HMPREF1032_00655	300.0	0	N/A	N/A
structural_annotation	UHGV-1368086_64	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-1368086_65	phrog_14105	94.0	1.4e-27	N/A	unknown function
UniRef90	UHGV-1368086_65	UniRef90_UPI001E51E034	86.7	4.09e-19	pentapeptide repeat-containing protein	N/A
eggNOG-mapper	UHGV-1368086_65	742740.HMPREF9474_02378	73.6	0.0000000000000168	dextransucrase activity	N/A
COG	UHGV-1368086_65	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
structural_annotation	UHGV-1368086_65	PF01469	N/A	N/A	N/A	N/A