UHGV-1368291 (vOTU-056217)

Viral Genome: UHGV-1368291

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1368291
vOTU ID	vOTU-056217
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0319482
Associated BioSample	SAMN02333946
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9757
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.91
Jumbo phage	No

Genome content
Genome length (bp)	53,809
GC content	51.58%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	78
CDS density	95%
Average CDS length (bps)	653.27
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1368291_1	phrog_37604	67.8	1.6e-19	N/A	unknown function
eggNOG-mapper	UHGV-1368291_1	457412.RSAG_01109	60.1	0.00000000015	N/A	N/A
NCBIFam	UHGV-1368291_2	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-1368291_2	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-1368291_8	phrog_511	67.7	1e-19	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1368291_8	657322.FPR_02360	71.2	0.00000000029	N/A	N/A
structural_annotation	UHGV-1368291_8	PF11134,MF_00923,NF010237,NF038128,COG5276	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1368291_9	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-1368291_11	phrog_14242	97.2	6e-29	major head protein	head and packaging
UniRef90	UHGV-1368291_11	UniRef90_A0A3D2CI53	322.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1368291_11	871968.DESME_08900	64.7	0.0000000167	N/A	N/A
NCBIFam	UHGV-1368291_11	NF033394.1	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-1368291_11	PF17236,MF_04133,NF033394,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1368291_13	phrog_156	116.8	1.8e-34	portal protein	head and packaging
eggNOG-mapper	UHGV-1368291_13	588581.Cpap_1526	295.0	0	N/A	N/A
structural_annotation	UHGV-1368291_13	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-1368291_16	K06909	124.7	8.7e-37	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1368291_16	phrog_2	122.1	6.6e-36	terminase large subunit	head and packaging
UniRef90	UHGV-1368291_16	UniRef90_A0A7X1LWQ0	459.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1368291_16	1232449.BAHV02000016_gene1824	403.0	0	N/A	N/A
Pfam	UHGV-1368291_16	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1368291_16	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1368291_16	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1368291_17	K07474	57.0	6.3e-16	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1368291_17	phrog_51	68.9	9.3e-20	terminase small subunit	head and packaging
Pfam	UHGV-1368291_17	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
UniRef90	UHGV-1368291_18	UniRef90_A0A3A8W743	50.8	0.00000245	Helix-turn-helix domain-containing protein	N/A
COG	UHGV-1368291_18	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
eggNOG-mapper	UHGV-1368291_20	658655.HMPREF0988_00918	48.9	0.00000118	N/A	N/A
PHROG	UHGV-1368291_21	phrog_16490	41.5	0.0000000000023	N/A	unknown function
eggNOG-mapper	UHGV-1368291_21	476272.RUMHYD_01954	81.3	0.00000000000000108	N/A	N/A
eggNOG-mapper	UHGV-1368291_22	1408437.JNJN01000043_gene802	113.0	1.53e-30	N/A	N/A
structural_annotation	UHGV-1368291_23	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
KOfam	UHGV-1368291_24	K14059	211.0	0	int; integrase	N/A
PHROG	UHGV-1368291_24	phrog_1	192.9	0	integrase	integration and excision
UniRef90	UHGV-1368291_24	UniRef90_A0A6N7W462	233.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1368291_24	1226322.HMPREF1545_00144	216.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1368291_24	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1368291_24	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1368291_24	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1368291_25	UniRef90_A0A1Q6SAI0	129.0	1.96e-35	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1368291_25	556261.HMPREF0240_01759	53.5	0.00000186	Putative restriction endonuclease	N/A
Pfam	UHGV-1368291_25	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1368291_25	COG4636	N/A	N/A	Endonuclease, Uma2 family (restriction endonuclease fold)	N/A
structural_annotation	UHGV-1368291_25	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1368291_31	phrog_8	44.9	0.0000000000026	transcriptional regulator	transcription regulation
UniRef90	UHGV-1368291_31	UniRef90_A0A8J6PFI8	83.2	2.21e-18	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1368291_31	1378168.N510_01712	65.9	0.0000000000212	N/A	N/A
structural_annotation	UHGV-1368291_31	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
Pfam	UHGV-1368291_33	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
PHROG	UHGV-1368291_37	phrog_253	107.3	1.3e-31	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1368291_37	UniRef90_UPI001898EED4	101.0	4.27e-24	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-1368291_37	1226322.HMPREF1545_04074	102.0	2.54e-25	Siphovirus Gp157	N/A
Pfam	UHGV-1368291_37	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1368291_37	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-1368291_38	phrog_659	203.4	0	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1368291_38	UniRef90_UPI001E5A6693	259.0	0	N/A	N/A
eggNOG-mapper	UHGV-1368291_38	1507.HMPREF0262_00431	231.0	0	N/A	N/A
Pfam	UHGV-1368291_38	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-1368291_38	PF06378,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1368291_39	phrog_72	66.5	3.8e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1368291_39	UniRef90_A0A8D9PDS2	152.0	5.74532e-44	NinB protein	N/A
eggNOG-mapper	UHGV-1368291_39	445972.ANACOL_01825	123.0	3.76e-33	N/A	N/A
structural_annotation	UHGV-1368291_39	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-1368291_40	phrog_7566	97.6	6.5e-29	N/A	unknown function
eggNOG-mapper	UHGV-1368291_40	1118057.CAGX01000020_gene1648	48.9	0.00000357	N/A	N/A
UniRef90	UHGV-1368291_41	UniRef90_A0A098GES5	111.0	6.5e-30	Putative phage associated protein	N/A
structural_annotation	UHGV-1368291_41	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
PHROG	UHGV-1368291_43	phrog_4973	52.7	0.0000000000000071	N/A	unknown function
Pfam	UHGV-1368291_43	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1368291_43	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
KOfam	UHGV-1368291_44	K03111	134.5	1.2e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1368291_44	phrog_44	145.3	3.19496e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1368291_44	UniRef90_R6TSJ9	172.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1368291_44	445972.ANACOL_04434	118.0	7.36e-32	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1368291_44	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1368291_44	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1368291_44	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1368291_44	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1368291_44	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1368291_45	phrog_20437	168.1	0	DNA replication initiation	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1368291_45	UniRef90_H5XZX0	153.0	1.02995e-41	N/A	N/A
eggNOG-mapper	UHGV-1368291_45	768710.DesyoDRAFT_5236	153.0	1.71939e-42	DnaD domain protein	N/A
Pfam	UHGV-1368291_45	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-1368291_45	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1368291_45	PF14297	N/A	N/A	N/A	N/A
KOfam	UHGV-1368291_47	K17680	334.3	0	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-1368291_47	phrog_239	286.1	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1368291_47	UniRef90_A0A413G4P8	551.0	0	SF4 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-1368291_47	247490.KSU1_C0210	330.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1368291_47	PF13155	N/A	N/A	Toprim-like	Toprim_2
Pfam	UHGV-1368291_47	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-1368291_47	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1368291_47	PF03796,PF19898,MF_04154,TIGR03877,TIGR01391,COG0467,COG0358	N/A	N/A	N/A	N/A
KOfam	UHGV-1368291_49	K05925	108.1	1.1e-31	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	N/A
PHROG	UHGV-1368291_49	phrog_359	262.6	0	DNA methyltransferase	other
UniRef90	UHGV-1368291_49	UniRef90_A0A1Q6KPW4	284.0	0	DNA methyltransferase	N/A
eggNOG-mapper	UHGV-1368291_49	742740.HMPREF9474_03058	273.0	0	Belongs to the MT-A70-like family	N/A
PADLOC	UHGV-1368291_49	MTase_II_00048	249.0	0	Type II methyltransferase	RM
Pfam	UHGV-1368291_49	PF05063	N/A	N/A	MT-A70	MT-A70
COG	UHGV-1368291_49	COG4725	N/A	N/A	N6-adenosine-specific RNA methylase IME4	N/A
structural_annotation	UHGV-1368291_49	PF05063,MF_01872,NF010253,COG4725	N/A	N/A	N/A	N/A
PHROG	UHGV-1368291_50	phrog_190	110.9	1.1e-32	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1368291_50	UniRef90_A0A4P8JTL4	128.0	3.38e-36	N/A	N/A
eggNOG-mapper	UHGV-1368291_50	742767.HMPREF9456_03412	91.7	1.3e-22	N/A	N/A
Pfam	UHGV-1368291_50	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1368291_50	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-1368291_51	K00558	154.5	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1368291_51	phrog_116	186.2	0	DNA methyltransferase	other
UniRef90	UHGV-1368291_51	UniRef90_D4JYK0	371.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1368291_51	718252.FP2_16350	371.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1368291_51	oMTase_00004	191.5	0	orphan methyltransferase	RM
Pfam	UHGV-1368291_51	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1368291_51	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1368291_51	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1368291_51	PF00145,TIGR00675	N/A	N/A	N/A	N/A
PHROG	UHGV-1368291_54	phrog_419	77.9	1.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-1368291_54	1282664.H354_06646	83.6	8.61e-19	N/A	N/A
PHROG	UHGV-1368291_60	phrog_2245	90.3	2.1e-26	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-1368291_60	UniRef90_A0A4U9RLZ8	68.2	0.000000000000486	N/A	N/A
eggNOG-mapper	UHGV-1368291_60	706433.HMPREF9430_01279	75.5	1.33e-16	N/A	N/A
structural_annotation	UHGV-1368291_60	PF12643,MF_01020,TIGR03188	N/A	N/A	N/A	N/A
COG	UHGV-1368291_62	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-1368291_62	PF04606,NF007241	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1368291_65	318464.IO99_07375	83.2	1.86e-19	N/A	N/A
KOfam	UHGV-1368291_68	K03091	81.1	2e-23	sigH; RNA polymerase sporulation-specific sigma factor	N/A
PHROG	UHGV-1368291_68	phrog_351	43.0	7.6e-21	RNA polymerase sigma factor	transcription regulation
eggNOG-mapper	UHGV-1368291_68	908338.HMPREF9286_1675	53.9	0.00000275	Belongs to the sigma-70 factor family	N/A
Pfam	UHGV-1368291_68	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
Pfam	UHGV-1368291_68	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
NCBIFam	UHGV-1368291_68	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-1368291_68	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1368291_68	PF04542,PF08281,MF_00962,NF006158,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-1368291_70	phrog_36	48.5	0.00000000000018	transcriptional regulator	transcription regulation
UniRef90	UHGV-1368291_70	UniRef90_A0A7X9GB27	73.6	0.00000000000000672	RNA polymerase subunit sigma-24	N/A
eggNOG-mapper	UHGV-1368291_70	1540257.JQMW01000004_gene433	61.6	0.0000000000811	N/A	N/A
structural_annotation	UHGV-1368291_71	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-1368291_72	phrog_22978	261.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1368291_72	1410650.JHWL01000003_gene2814	213.0	0	N/A	N/A
Pfam	UHGV-1368291_72	PF18838	N/A	N/A	Large polyvalent protein associated domain 23	LPD23
Pfam	UHGV-1368291_72	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
KOfam	UHGV-1368291_74	K01447	55.1	0.0000000000000015	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1368291_74	phrog_15001	127.2	1.4e-37	endolysin	lysis
UniRef90	UHGV-1368291_74	UniRef90_R6U0F7	258.0	0	Putative lipoprotein	N/A
eggNOG-mapper	UHGV-1368291_74	552398.HMPREF0866_01156	163.0	0	Ami_2	N/A
Pfam	UHGV-1368291_74	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1368291_74	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
PHROG	UHGV-1368291_75	phrog_1129	68.1	9.2e-20	holin	lysis
UniRef90	UHGV-1368291_75	UniRef90_A0A316LUD8	140.0	1.10002e-41	Enolase (Fragment)	N/A
eggNOG-mapper	UHGV-1368291_75	742740.HMPREF9474_03522	123.0	1.53e-35	N/A	N/A
Pfam	UHGV-1368291_75	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1368291_75	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1368291_76	phrog_918	95.2	3.8e-28	N/A	unknown function
UniRef90	UHGV-1368291_76	UniRef90_UPI0015F4118C	95.5	5.67e-24	N/A	N/A
eggNOG-mapper	UHGV-1368291_76	298338.Q5ULN6_9CAUD	94.7	3.17e-24	N/A	N/A
Pfam	UHGV-1368291_76	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-1368291_76	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-1368291_78	phrog_37604	88.4	6.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-1368291_78	1232443.BAIA02000078_gene10	95.1	1.21e-23	N/A	N/A