UHGV-1369648 (vOTU-056431)

Viral Genome: UHGV-1369648

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1369648
vOTU ID	vOTU-056431
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0275341
Associated BioSample	SAMEA3182105
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9818
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.95
Jumbo phage	No

Genome content
Genome length (bp)	41,268
GC content	54.10%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	71
CDS density	90%
Average CDS length (bps)	523.31
Total tRNA genes	6
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1369648_1	phrog_4433	127.7	1.1e-37	N/A	unknown function
UniRef90	UHGV-1369648_1	UniRef90_A0A6M5C839	92.8	1.33e-20	Putative ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-1369648_1	33035.JPJF01000122_gene2458	95.9	1.98e-21	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1369648_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1369648_1	NF000318	N/A	N/A	N/A	N/A
PHROG	UHGV-1369648_2	phrog_373	162.8	0	anti-repressor	transcription regulation
UniRef90	UHGV-1369648_2	UniRef90_UPI001C039A6C	302.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-1369648_2	748224.HMPREF9436_01449	145.0	9.16996e-41	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-1369648_2	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-1369648_2	PF10552	N/A	N/A	ORF6C domain	ORF6C
NCBIFam	UHGV-1369648_2	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-1369648_2	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
UniRef90	UHGV-1369648_4	UniRef90_UPI0018995761	75.5	1.12e-16	helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-1369648_4	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1369648_5	phrog_8	42.7	0.000000000012	transcriptional regulator	transcription regulation
UniRef90	UHGV-1369648_5	UniRef90_UPI001CBE4822	96.3	1.22e-23	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1369648_5	1226322.HMPREF1545_00148	79.3	1.13e-17	Transcriptional	N/A
Pfam	UHGV-1369648_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1369648_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1369648_5	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1369648_8	phrog_888	64.5	6e-34	N/A	unknown function
UniRef90	UHGV-1369648_8	UniRef90_A0A6N7TMA2	354.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-1369648_8	1151292.QEW_1347	77.8	0.0000000000000268	Short C-terminal domain	N/A
Pfam	UHGV-1369648_8	PF14471	N/A	N/A	N/A	DUF4428
Pfam	UHGV-1369648_8	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-1369648_8	PF15947,PF14471	N/A	N/A	N/A	N/A
UniRef90	UHGV-1369648_10	UniRef90_A0A6N7TLT0	333.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1369648_10	266265.Bxe_A3948	52.4	0.000000941	Helix-turn-helix domain	N/A
Pfam	UHGV-1369648_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1369648_10	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1369648_10	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1369648_11	K14059	139.9	3.09995e-41	int; integrase	N/A
PHROG	UHGV-1369648_11	phrog_1	163.3	0	integrase	integration and excision
UniRef90	UHGV-1369648_11	UniRef90_A0A6N7TNQ4	728.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1369648_11	411471.SUBVAR_05137	259.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1369648_11	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1369648_11	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1369648_11	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1369648_13	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-1369648_14	phrog_20016	207.1	0	N/A	unknown function
UniRef90	UHGV-1369648_14	UniRef90_A0A285PT46	215.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1369648_14	1226322.HMPREF1545_00077	185.0	0	N/A	N/A
structural_annotation	UHGV-1369648_14	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1369648_16	phrog_16490	198.8	0	N/A	unknown function
eggNOG-mapper	UHGV-1369648_16	397290.C810_01328	126.0	1.4e-31	N/A	N/A
PHROG	UHGV-1369648_17	phrog_22984	70.3	2.6e-20	N/A	unknown function
PHROG	UHGV-1369648_18	phrog_21718	87.9	1.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-1369648_18	397290.C810_05210	78.2	4.47e-16	N/A	N/A
PHROG	UHGV-1369648_19	phrog_3754	90.6	1.5e-26	N/A	unknown function
eggNOG-mapper	UHGV-1369648_19	1485543.JMME01000025_gene2462	104.0	9.78e-28	N/A	N/A
eggNOG-mapper	UHGV-1369648_21	1235798.C817_04600	50.4	0.00000152	N/A	N/A
Pfam	UHGV-1369648_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1369648_21	PF13560,NF040522	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1369648_23	PF07374,MF_00245,NF001072,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1369648_26	411483.FAEPRAA2165_00757	164.0	9.61291e-43	N/A	N/A
PHROG	UHGV-1369648_27	phrog_15303	122.3	2e-36	N/A	unknown function
KOfam	UHGV-1369648_29	K07273	158.1	0	acm; lysozyme	N/A
PHROG	UHGV-1369648_29	phrog_291	115.3	6.2e-34	endolysin	lysis
UniRef90	UHGV-1369648_29	UniRef90_A0A564U0D3	306.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-1369648_29	718252.FP2_04890	280.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1369648_29	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1369648_29	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1369648_29	PF01183,TIGR04053,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1369648_30	phrog_2310	58.4	6.9e-17	N/A	unknown function
eggNOG-mapper	UHGV-1369648_31	657322.FPR_13530	65.1	0.0000000114	domain, Protein	N/A
COG	UHGV-1369648_31	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-1369648_32	phrog_3558	217.9	0	tail protein	tail
UniRef90	UHGV-1369648_32	UniRef90_UPI001C01D15B	157.0	2.38e-37	phage tail protein	N/A
eggNOG-mapper	UHGV-1369648_32	1235799.C818_04233	98.6	4.18e-19	Prophage endopeptidase tail	N/A
Pfam	UHGV-1369648_32	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-1369648_32	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1369648_32	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1369648_33	phrog_33	42.6	0.000000000012	distal tail protein Dit	tail
UniRef90	UHGV-1369648_33	UniRef90_A0A417QGC1	122.0	1.91e-30	MtfA protein	N/A
eggNOG-mapper	UHGV-1369648_33	97139.C824_05958	86.7	1.24e-17	Phage tail protein	N/A
COG	UHGV-1369648_33	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1369648_33	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1369648_34	phrog_28775	116.6	1e-34	tail length tape measure protein	tail
UniRef90	UHGV-1369648_34	UniRef90_A0A6N7TLD3	847.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-1369648_34	1492737.FEM08_12070	142.0	1.27e-32	tape measure	N/A
Pfam	UHGV-1369648_34	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1369648_34	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1369648_34	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1369648_34	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1369648_37	phrog_885	67.0	2.4e-19	major tail protein	tail
UniRef90	UHGV-1369648_37	UniRef90_A0A843J9F0	129.0	2.46e-33	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1369648_37	457396.CSBG_01054	64.7	0.000000000627	Chitobiase/beta-hexosaminidase C-terminal domain	N/A
COG	UHGV-1369648_37	COG2273	N/A	N/A	Beta-glucanase, GH16 family	N/A
structural_annotation	UHGV-1369648_37	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1369648_38	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-1369648_39	phrog_17977	54.3	0.0000000000000019	N/A	unknown function
UniRef90	UHGV-1369648_39	UniRef90_A0A844DHJ8	190.0	0	Phage head closure protein	N/A
structural_annotation	UHGV-1369648_39	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1369648_41	phrog_544	147.1	1.09301e-43	major head protein	head and packaging
UniRef90	UHGV-1369648_41	UniRef90_R0BKA1	432.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1369648_41	476272.RUMHYD_01776	327.0	0	N/A	N/A
structural_annotation	UHGV-1369648_41	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1369648_42	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1369648_44	phrog_5	53.8	0.0000000000000048	tail completion or Neck1 protein	connector
UniRef90	UHGV-1369648_44	UniRef90_A0A6N7TNP6	286.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1369648_44	1123309.AQYB01000018_gene814	92.4	5.62e-22	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1369648_44	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1369648_44	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1369648_44	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1369648_46	phrog_8680	205.7	0	N/A	unknown function
UniRef90	UHGV-1369648_46	UniRef90_A0A6N7TNE8	453.0	0	N/A	N/A
eggNOG-mapper	UHGV-1369648_46	1423790.BN53_04265	177.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-1369648_46	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-1369648_46	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1369648_46	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-1369648_48	phrog_2468	80.8	1.2e-23	head morphogenesis	head and packaging
UniRef90	UHGV-1369648_48	UniRef90_A0A6N7TLR7	607.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1369648_48	386415.NT01CX_2177	85.1	0.00000000000000229	Phage Mu protein F like protein	N/A
Pfam	UHGV-1369648_48	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1369648_48	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1369648_48	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1369648_50	phrog_64	126.7	9.8e-38	portal protein	head and packaging
UniRef90	UHGV-1369648_50	UniRef90_A0A6N7TNT3	824.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1369648_50	1042156.CXIVA_01850	82.0	0.0000000000000789	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1369648_50	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1369648_50	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-1369648_51	K06909	137.5	1.3e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1369648_51	phrog_10250	176.0	0	N/A	unknown function
UniRef90	UHGV-1369648_51	UniRef90_A0A844D8I4	835.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1369648_51	411490.ANACAC_00783	491.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1369648_51	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-1369648_51	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1369648_51	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1369648_51	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-1369648_52	UniRef90_UPI0018CC2891	104.0	9.81e-26	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1369648_52	1235790.C805_00037	102.0	1.51e-25	N/A	N/A
structural_annotation	UHGV-1369648_52	PF04218	N/A	N/A	N/A	N/A
PHROG	UHGV-1369648_54	phrog_36	69.6	5.2e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-1369648_54	UniRef90_A0A6N7TNN9	267.0	0	N/A	N/A
eggNOG-mapper	UHGV-1369648_54	748224.HMPREF9436_01463	79.0	1.13e-16	N/A	N/A
Pfam	UHGV-1369648_54	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-1369648_54	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-1369648_56	K01160	59.0	1.5e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1369648_56	phrog_34	58.9	1.2e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1369648_56	UniRef90_A0A6N7TND6	214.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1369648_56	875454.BAEW01000002_gene491	132.0	2.75e-38	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1369648_56	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1369648_56	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1369648_56	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1369648_57	phrog_3136	113.7	7.7e-34	N/A	unknown function
UniRef90	UHGV-1369648_57	UniRef90_A0A6N7TMC2	214.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1369648_57	1235793.C809_02645	54.7	0.0000022	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1369648_57	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1369648_57	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1369648_58	phrog_757	123.8	1e-36	DNA methyltransferase	other
UniRef90	UHGV-1369648_58	UniRef90_A0A417JTT5	231.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1369648_58	1095750.HMPREF9970_0173	158.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1369648_58	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-1369648_59	phrog_757	51.1	0.00000000000002	DNA methyltransferase	other
UniRef90	UHGV-1369648_59	UniRef90_A0A7J2R6L5	68.9	0.0000000000000216	DNA cytosine methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-1369648_59	748224.HMPREF9436_03069	103.0	4.88e-27	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1369648_59	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1369648_61	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
PHROG	UHGV-1369648_62	phrog_15768	115.1	5.4e-34	N/A	unknown function
UniRef90	UHGV-1369648_62	UniRef90_A0A3F3JUK4	231.0	0	N/A	N/A
eggNOG-mapper	UHGV-1369648_62	748224.HMPREF9436_03357	112.0	3.91e-27	N/A	N/A
Pfam	UHGV-1369648_62	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1369648_62	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1369648_63	K03111	137.0	2.1e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1369648_63	phrog_44	141.0	6.60012e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1369648_63	UniRef90_UPI001C00AA91	218.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1369648_63	718252.FP2_06770	207.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1369648_63	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1369648_63	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1369648_63	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1369648_63	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1369648_63	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1369648_64	phrog_561	124.9	6.8e-37	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1369648_64	UniRef90_A0A1G8PW75	149.0	4.96999e-41	RecT family protein	N/A
eggNOG-mapper	UHGV-1369648_64	563192.HMPREF0179_00147	154.0	1.00053e-42	N/A	N/A
structural_annotation	UHGV-1369648_64	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1369648_66	PF14120	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1369648_68	PF09537	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1369648_69	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1369648_70	PF10743,NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-1369648_71	phrog_27197	80.1	2.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-1369648_71	394503.Ccel_3068	58.9	0.00000000182	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1369648_71	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A