UHGV-1370222 (vOTU-056513)

Viral Genome: UHGV-1370222

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1370222
vOTU ID	vOTU-056513
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0317697
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9764
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.48
Jumbo phage	No

Genome content
Genome length (bp)	52,961
GC content	34.83%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	85
CDS density	88%
Average CDS length (bps)	547.34
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1370222_2	phrog_64	141.3	4.79945e-42	portal protein	head and packaging
UniRef90	UHGV-1370222_2	UniRef90_A0A7X7EMS9	325.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1370222_2	428127.EUBDOL_01552	189.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1370222_2	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1370222_2	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1370222_3	phrog_38	76.0	4e-22	terminase large subunit	head and packaging
UniRef90	UHGV-1370222_3	UniRef90_UPI001D009E65	68.6	0.0000000208	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1370222_3	428127.EUBDOL_01551	139.0	1.12e-33	chromosome segregation	N/A
COG	UHGV-1370222_3	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1370222_3	PF17289,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
KOfam	UHGV-1370222_5	K07317	52.8	0.0000000000000048	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-1370222_5	phrog_21201	60.1	3.1e-17	DNA methyltransferase	other
UniRef90	UHGV-1370222_5	UniRef90_A0A1C6BWK1	118.0	2.16e-31	Modification methylase VspI	N/A
eggNOG-mapper	UHGV-1370222_5	1437608.BBIA_1421	110.0	3.4e-28	Type II restriction enzyme, methylase subunits	N/A
COG	UHGV-1370222_5	COG1002	N/A	N/A	Type II restriction/modification system, endonuclease and methylase domains	N/A
PHROG	UHGV-1370222_9	phrog_8684	110.6	1.1e-32	N/A	unknown function
UniRef90	UHGV-1370222_9	UniRef90_UPI0009701180	83.2	1.79e-17	YopX family protein	N/A
eggNOG-mapper	UHGV-1370222_9	1121097.JCM15093_2710	78.2	3.36e-16	YopX protein	N/A
Pfam	UHGV-1370222_9	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1370222_9	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1370222_9	PF09643,TIGR01671	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1370222_12	PF05732,MF_01177,TIGR01610,COG0640	N/A	N/A	N/A	N/A
PHROG	UHGV-1370222_19	phrog_4973	67.7	1.6e-19	N/A	unknown function
UniRef90	UHGV-1370222_19	UniRef90_A0A3R6RL03	62.4	0.00000000003	DNA-binding protein	N/A
Pfam	UHGV-1370222_19	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1370222_19	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
KOfam	UHGV-1370222_20	K03466	271.2	0	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	N/A
PHROG	UHGV-1370222_20	phrog_1358	224.6	0	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1370222_20	UniRef90_A0A7C3RPU4	219.0	0	DNA translocase FtsK	N/A
eggNOG-mapper	UHGV-1370222_20	1280688.AUJB01000008_gene1184	214.0	0	Ftsk gamma domain	N/A
PADLOC	UHGV-1370222_20	SspH_00004	174.5	0	SspH	SSP
Pfam	UHGV-1370222_20	PF01580	N/A	N/A	FtsK/SpoIIIE family	FtsK_SpoIIIE
COG	UHGV-1370222_20	COG1674	N/A	N/A	DNA segregation ATPase FtsK/SpoIIIE or related protein	N/A
PHROG	UHGV-1370222_24	phrog_3136	129.6	1.1e-38	N/A	unknown function
UniRef90	UHGV-1370222_24	UniRef90_UPI001A9A8D4F	116.0	3.38e-29	ASCH domain-containing protein	N/A
COG	UHGV-1370222_24	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1370222_24	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-1370222_29	K00571	180.4	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1370222_29	phrog_67	178.1	0	DNA methyltransferase	other
UniRef90	UHGV-1370222_29	UniRef90_UPI0009878B11	318.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1370222_29	1151292.QEW_0441	263.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-1370222_29	MTase_II_00037	157.5	0	Type II methyltransferase	RM
Pfam	UHGV-1370222_29	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1370222_29	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1370222_29	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-1370222_35	K14060	114.0	1.7e-33	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1370222_35	phrog_125	115.2	6.3e-34	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370222_35	UniRef90_A0A381IYP1	77.8	0.0000000000000323	Resolvase	N/A
eggNOG-mapper	UHGV-1370222_35	1499502.EV12_0469	74.3	0.000000000000227	Alternative locus ID	N/A
Pfam	UHGV-1370222_35	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1370222_35	PF02796	N/A	N/A	Helix-turn-helix domain of resolvase	HTH_7
COG	UHGV-1370222_35	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1370222_35	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-1370222_37	K00558	169.8	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1370222_37	phrog_116	188.1	0	DNA methyltransferase	other
UniRef90	UHGV-1370222_37	UniRef90_A0A7K3ZBD4	354.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1370222_37	397290.C810_05213	280.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1370222_37	MTase_II_00058	136.7	0	Type II methyltransferase	RM
Pfam	UHGV-1370222_37	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1370222_37	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1370222_37	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1370222_37	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1370222_44	phrog_19106	131.5	5.9e-39	N/A	unknown function
UniRef90	UHGV-1370222_44	UniRef90_K1SYJ2	113.0	5.12e-28	GIY-YIG domain-containing protein	N/A
eggNOG-mapper	UHGV-1370222_44	658655.HMPREF0988_00875	111.0	4.07e-28	N/A	N/A
Pfam	UHGV-1370222_44	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
structural_annotation	UHGV-1370222_44	TIGR01453	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1370222_46	PF11506,MF_00984,NF006039,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1370222_48	phrog_434	59.0	7.9e-17	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370222_48	UniRef90_B0PAM4	122.0	9.3e-32	YqaJ domain-containing protein	N/A
Pfam	UHGV-1370222_48	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
structural_annotation	UHGV-1370222_48	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-1370222_49	phrog_314	99.1	3.6e-29	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370222_49	UniRef90_A0A075KJD6	121.0	1.75e-29	Putative truncated GIY-YIG endonuclease	N/A
eggNOG-mapper	UHGV-1370222_49	1399942.U3PCR9_9CAUD	114.0	1.27e-27	NUMOD3 motif (2 copies)	N/A
Pfam	UHGV-1370222_49	PF07460	N/A	N/A	NUMOD3 motif	NUMOD3
structural_annotation	UHGV-1370222_49	PF19835,PF07453,TIGR01453,COG2827	N/A	N/A	N/A	N/A
UniRef90	UHGV-1370222_50	UniRef90_UPI0008FA9D83	82.0	6.76e-16	ERF family protein	N/A
eggNOG-mapper	UHGV-1370222_50	1415775.U729_2586	68.6	0.0000000000153	ERF superfamily	N/A
Pfam	UHGV-1370222_50	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1370222_50	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1370222_55	phrog_6969	109.7	2.2e-32	N/A	unknown function
UniRef90	UHGV-1370222_55	UniRef90_A0A285PT73	105.0	1.1e-23	Helix-turn-helix domain	N/A
eggNOG-mapper	UHGV-1370222_55	1232446.BAIE02000002_gene816	104.0	2.2e-24	N/A	N/A
structural_annotation	UHGV-1370222_55	PF05584,MF_01819,TIGR01610,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-1370222_56	phrog_374	190.1	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370222_56	UniRef90_A0A7W0C2S3	178.0	0	Putative transcriptional regulator	N/A
eggNOG-mapper	UHGV-1370222_56	397290.C810_01484	171.0	0	N/A	N/A
structural_annotation	UHGV-1370222_56	PF17375	N/A	N/A	N/A	N/A
UniRef90	UHGV-1370222_59	UniRef90_A0A345BNU6	159.0	0	Spore surface glycoprotein	N/A
structural_annotation	UHGV-1370222_59	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1370222_60	phrog_16490	94.2	3.9e-28	N/A	unknown function
eggNOG-mapper	UHGV-1370222_60	476272.RUMHYD_01770	144.0	5.13e-40	N/A	N/A
PHROG	UHGV-1370222_62	phrog_21718	41.5	0.00000000002	N/A	unknown function
Pfam	UHGV-1370222_63	PF04647	N/A	N/A	Accessory gene regulator B	AgrB
structural_annotation	UHGV-1370222_63	PF08281,NF001067,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1370222_70	phrog_35892	47.8	3.9e-21	N/A	unknown function
Pfam	UHGV-1370222_70	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
PHROG	UHGV-1370222_72	phrog_32311	41.9	0.0000000000073	N/A	unknown function
structural_annotation	UHGV-1370222_74	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1370222_78	1121333.JMLH01000047_gene1013	105.0	8.8e-26	N/A	N/A
structural_annotation	UHGV-1370222_79	PF06141	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1370222_81	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1370222_84	phrog_29	190.2	0	major head protein	head and packaging
UniRef90	UHGV-1370222_84	UniRef90_UPI00082F78A3	211.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-1370222_84	1232443.BAIA02000078_gene29	211.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1370222_84	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1370222_84	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1370222_85	phrog_909	51.9	0.000000000000014	major head protein	head and packaging
eggNOG-mapper	UHGV-1370222_85	1296662.S5MCF0_9CAUD	50.1	0.000003	N/A	N/A
structural_annotation	UHGV-1370222_85	PF02924	N/A	N/A	N/A	N/A