UHGV-1370592 (vOTU-056565)

Viral Genome: UHGV-1370592

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1370592
vOTU ID	vOTU-056565
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0290416
Associated BioSample	SAMN02333972
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9781
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.2
Jumbo phage	No

Genome content
Genome length (bp)	44,259
GC content	40.18%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	65
CDS density	90%
Average CDS length (bps)	611.45
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1370592_1	phrog_28052	43.6	0.0000000000048	N/A	unknown function
eggNOG-mapper	UHGV-1370592_1	176279.SERP1614	55.5	0.0000000156	N/A	N/A
PHROG	UHGV-1370592_4	phrog_606	40.5	0.000000000041	terminase small subunit	head and packaging
UniRef90	UHGV-1370592_4	UniRef90_UPI001D07B715	127.0	5.29e-34	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1370592_4	877421.AUJT01000054_gene66	54.3	0.000000752	N/A	N/A
Pfam	UHGV-1370592_4	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1370592_4	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1370592_5	K02316	102.6	3.1e-30	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-1370592_5	phrog_864	232.2	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370592_5	UniRef90_UPI001D08D333	569.0	0	phage/plasmid primase, P4 family	N/A
eggNOG-mapper	UHGV-1370592_5	1120972.AUMH01000014_gene2562	154.0	1.53e-36	Phage plasmid primase, P4	N/A
Pfam	UHGV-1370592_5	PF13155	N/A	N/A	Toprim-like	Toprim_2
Pfam	UHGV-1370592_5	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-1370592_5	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-1370592_5	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-1370592_5	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-1370592_5	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-1370592_5	PF04735,MF_00974,MF_04000,NF005477,COG3378,COG0358	N/A	N/A	N/A	N/A
PHROG	UHGV-1370592_6	phrog_9298	339.7	0	radical SAM domain protein	other
UniRef90	UHGV-1370592_6	UniRef90_A0A7X4ZLS3	459.0	0	Radical SAM protein	N/A
eggNOG-mapper	UHGV-1370592_6	1235793.C809_02647	397.0	0	N/A	N/A
COG	UHGV-1370592_6	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-1370592_6	MF_01864,NF010916,COG2516	N/A	N/A	N/A	N/A
PHROG	UHGV-1370592_14	phrog_5702	51.8	0.0000000000000072	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370592_14	UniRef90_A0A2V2CT51	173.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1370592_14	764299.STRIC_0092	71.2	0.0000000000000109	VRR-NUC domain	N/A
structural_annotation	UHGV-1370592_14	PF03838,MF_04160,NF002583	N/A	N/A	N/A	N/A
KOfam	UHGV-1370592_15	K17398	72.0	3.4e-32	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	N/A
PHROG	UHGV-1370592_15	phrog_17284	128.3	0	N/A	unknown function
UniRef90	UHGV-1370592_15	UniRef90_R8VX88	368.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1370592_15	1203606.HMPREF1526_01874	368.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
Pfam	UHGV-1370592_15	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1370592_15	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1370592_15	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-1370592_17	K17677	212.0	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1370592_17	phrog_16	195.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370592_17	UniRef90_A0A356CZA9	305.0	0	Helicase	N/A
eggNOG-mapper	UHGV-1370592_17	1410670.JHXF01000015_gene2270	290.0	0	helicase	N/A
PADLOC	UHGV-1370592_17	mREase_IV_00005	80.3	2.2e-23	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1370592_17	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1370592_17	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1370592_17	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1370592_17	PF04851,PF00271,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
Pfam	UHGV-1370592_19	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-1370592_19	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1370592_20	phrog_124	72.9	4.8e-21	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370592_20	UniRef90_UPI001D097C08	177.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1370592_20	365659.smi_0421	63.9	0.00000000154	AAA domain	N/A
Pfam	UHGV-1370592_20	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1370592_20	PF13479,MF_00268,TIGR01618,COG2874	N/A	N/A	N/A	N/A
PHROG	UHGV-1370592_21	phrog_1227	223.5	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370592_21	UniRef90_A0A3D5PCL4	293.0	0	N/A	N/A
eggNOG-mapper	UHGV-1370592_21	1120998.AUFC01000030_gene2216	202.0	0	N/A	N/A
Pfam	UHGV-1370592_21	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-1370592_21	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1370592_21	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1370592_22	PF00412	N/A	N/A	N/A	N/A
KOfam	UHGV-1370592_24	K18830	52.0	0.000000000000018	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1370592_24	phrog_1373	47.4	0.00000000000032	transcriptional regulator	transcription regulation
UniRef90	UHGV-1370592_24	UniRef90_A0A2G2PWZ3	51.2	0.00000174	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1370592_24	1410658.JHWI01000018_gene1909	47.8	0.00000324	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-1370592_24	retron_type_VI_hth_cluster2_1	54.8	0.0000000000000026	N/A	Retron
Pfam	UHGV-1370592_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1370592_24	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1370592_24	PF13560,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1370592_26	K03496	222.2	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1370592_26	phrog_164	170.2	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370592_26	UniRef90_A0A1I4IP78	209.0	0	Chromosome partitioning protein	N/A
eggNOG-mapper	UHGV-1370592_26	1280679.ATVX01000009_gene1710	167.0	0	Cellulose biosynthesis protein BcsQ	N/A
Pfam	UHGV-1370592_26	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1370592_26	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1370592_26	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-1370592_27	phrog_937	64.4	2.1e-18	hemolysin	other
eggNOG-mapper	UHGV-1370592_27	1519439.JPJG01000023_gene533	92.4	3.15e-23	N/A	N/A
UniRef90	UHGV-1370592_32	UniRef90_A0A8J7RRW9	65.9	0.00000000631	Collagen-like protein	N/A
PHROG	UHGV-1370592_33	phrog_33625	54.9	8.8e-16	holin	lysis
UniRef90	UHGV-1370592_33	UniRef90_A7VT88	142.0	1.52041e-42	Holin, phage phi LC3 family	N/A
eggNOG-mapper	UHGV-1370592_33	428125.CLOLEP_01780	142.0	2.53635e-43	COG COG5546 Small integral membrane protein	N/A
Pfam	UHGV-1370592_33	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1370592_33	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1370592_33	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1370592_33	COG5546	N/A	N/A	N/A	N/A
KOfam	UHGV-1370592_34	K01448	168.3	0	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1370592_34	phrog_435	178.0	0	endolysin	lysis
UniRef90	UHGV-1370592_34	UniRef90_UPI001EE38E96	275.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1370592_34	1203606.HMPREF1526_00962	231.0	0	Ami_3	N/A
Pfam	UHGV-1370592_34	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-1370592_34	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-1370592_34	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1370592_34	PF01520,PF18342,MF_00562,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-1370592_37	phrog_18725	96.1	3.8e-28	N/A	unknown function
eggNOG-mapper	UHGV-1370592_37	693746.OBV_18220	94.7	1.05e-22	N/A	N/A
PHROG	UHGV-1370592_39	phrog_13879	268.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1370592_39	1120746.CCNL01000014_gene2107	67.4	0.00000000606	N/A	N/A
structural_annotation	UHGV-1370592_39	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-1370592_40	phrog_1194	67.9	1.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-1370592_40	1007103.AFHW01000096_gene3257	60.8	0.000000000289	N/A	N/A
Pfam	UHGV-1370592_40	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1370592_40	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1370592_41	phrog_1535	101.9	2.6e-34	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1370592_41	702450.CUW_0543	93.2	5.24e-16	phage tail tape measure protein	N/A
COG	UHGV-1370592_41	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
eggNOG-mapper	UHGV-1370592_42	1121333.JMLH01000047_gene1011	88.2	2.56e-20	N/A	N/A
UniRef90	UHGV-1370592_43	UniRef90_A0A847W2H3	99.0	1.5e-24	N/A	N/A
eggNOG-mapper	UHGV-1370592_43	469596.HMPREF9488_01311	77.8	4.87e-17	N/A	N/A
Pfam	UHGV-1370592_43	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-1370592_43	PF16478	N/A	N/A	N/A	N/A
UniRef90	UHGV-1370592_44	UniRef90_UPI000E415907	87.8	1.15e-19	phage tail protein	N/A
eggNOG-mapper	UHGV-1370592_44	1232453.BAIF02000058_gene1634	83.2	1.06e-18	N/A	N/A
structural_annotation	UHGV-1370592_44	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1370592_45	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1370592_46	476272.RUMHYD_01963	68.2	0.00000000000528	N/A	N/A
eggNOG-mapper	UHGV-1370592_47	1232453.BAIF02000058_gene1630	65.9	0.00000000000459	N/A	N/A
structural_annotation	UHGV-1370592_47	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-1370592_48	UniRef90_D7GQN2	95.1	2.93e-23	Phage QLRG family, putative DNA packaging	N/A
eggNOG-mapper	UHGV-1370592_48	1298920.KI911353_gene2658	59.7	0.000000000421	N/A	N/A
Pfam	UHGV-1370592_48	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-1370592_48	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1370592_49	phrog_544	63.4	7.5e-19	major head protein	head and packaging
UniRef90	UHGV-1370592_49	UniRef90_A0A6N3FT63	153.0	7.46051e-42	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-1370592_49	428127.EUBDOL_01555	263.0	0	N/A	N/A
structural_annotation	UHGV-1370592_49	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1370592_52	phrog_64	202.8	0	portal protein	head and packaging
UniRef90	UHGV-1370592_52	UniRef90_A0A1C6L010	379.0	0	Phage portal protein, SPP1 family	N/A
eggNOG-mapper	UHGV-1370592_52	1121866.AUGK01000003_gene1429	328.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1370592_52	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1370592_52	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1370592_53	phrog_38	161.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-1370592_53	UniRef90_A0A318EQM2	285.0	0	Putative phage terminase large subunit-like protein	N/A
eggNOG-mapper	UHGV-1370592_53	1232453.BAIF02000058_gene1623	253.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-1370592_53	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-1370592_53	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1370592_53	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-1370592_55	phrog_7839	89.1	3.8e-26	N/A	unknown function
eggNOG-mapper	UHGV-1370592_55	1410650.JHWL01000003_gene2844	152.0	1.4013e-45	N/A	N/A
KOfam	UHGV-1370592_57	K04769	71.0	2.8e-20	spoVT; AbrB family transcriptional regulator, stage V sporulation protein T	N/A
PHROG	UHGV-1370592_57	phrog_4681	61.0	1.5e-17	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1370592_57	UniRef90_A0A6B4P1K9	67.0	0.000000000000197	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1370592_57	537013.CLOSTMETH_00868	62.8	0.0000000000143	stage V sporulation protein T	N/A
Pfam	UHGV-1370592_57	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
NCBIFam	UHGV-1370592_57	TIGR01439.1	N/A	N/A	transcriptional regulator, AbrB family	N/A
COG	UHGV-1370592_57	COG2002	N/A	N/A	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	N/A
KOfam	UHGV-1370592_61	K07449	65.6	5.5e-19	K07449; similar to archaeal holliday junction resolvase and Mrr protein	N/A
eggNOG-mapper	UHGV-1370592_61	1134912.AJTV01000019_gene3191	59.7	0.0000000748	Restriction endonuclease	N/A
Pfam	UHGV-1370592_61	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-1370592_61	COG1787	N/A	N/A	Endonuclease, HJR/Mrr/RecB family	N/A
KOfam	UHGV-1370592_62	K14060	85.6	7.5e-25	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1370592_62	phrog_125	112.6	3.9e-33	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370592_62	UniRef90_H1CEQ0	192.0	0	Resolvase/invertase-type recombinase catalytic domain-containing protein	N/A
eggNOG-mapper	UHGV-1370592_62	1414720.CBYM010000001_gene756	162.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1370592_62	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-1370592_62	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1370592_62	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1370592_63	PF20075,TIGR02612,COG1396	N/A	N/A	N/A	N/A