UHGV-1370633 (vOTU-007291)

Viral Genome: UHGV-1370633

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1370633
vOTU ID	vOTU-007291
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0291706
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9764
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.27
Jumbo phage	No

Genome content
Genome length (bp)	44,579
GC content	56.30%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	69
CDS density	89%
Average CDS length (bps)	575.52
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1370633_2	K14059	200.8	0	int; integrase	N/A
PHROG	UHGV-1370633_2	phrog_1	167.6	0	integrase	integration and excision
UniRef90	UHGV-1370633_2	UniRef90_UPI001EDEB0AD	222.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1370633_2	742738.HMPREF9460_01344	204.0	0	Phage integrase family	N/A
Pfam	UHGV-1370633_2	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1370633_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1370633_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1370633_2	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
Pfam	UHGV-1370633_3	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1370633_3	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1370633_3	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1370633_6	K22300	45.2	0.0000000000019	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1370633_6	phrog_8	43.5	0.0000000000068	transcriptional regulator	transcription regulation
UniRef90	UHGV-1370633_6	UniRef90_A0A2Z5YXK7	62.0	0.000000000593	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1370633_6	1096930.L284_18935	52.4	0.00000153	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-1370633_6	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-1370633_6	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1370633_10	PF21291,NF041951,COG1513	N/A	N/A	N/A	N/A
dbAPIS	UHGV-1370633_16	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
COG	UHGV-1370633_16	COG5352	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1370633_16	PF01710,NF040595,COG3415	N/A	N/A	N/A	N/A
PHROG	UHGV-1370633_20	phrog_1374	54.5	0.0000000000000015	N/A	unknown function
UniRef90	UHGV-1370633_20	UniRef90_A0A4R2SLJ8	60.5	0.0000000000863	Transmembrane Fragile-X-F protein	N/A
eggNOG-mapper	UHGV-1370633_20	33876.JNXY01000004_gene1766	60.1	0.0000000000227	Transmembrane Fragile-X-F protein	N/A
PHROG	UHGV-1370633_26	phrog_774	52.5	0.0000000000000089	N/A	unknown function
eggNOG-mapper	UHGV-1370633_26	397290.C810_05225	69.3	0.000000000000328	N/A	N/A
KOfam	UHGV-1370633_28	K10906	87.7	2.1e-29	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	N/A
PHROG	UHGV-1370633_28	phrog_412	239.3	0	exonuclease VIII	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370633_28	UniRef90_A0A1C6GFL6	242.0	0	Exodeoxyribonuclease 8	N/A
eggNOG-mapper	UHGV-1370633_28	1454004.AW11_02382	196.0	0	N/A	N/A
Pfam	UHGV-1370633_28	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-1370633_28	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1370633_28	PF12684,MF_03030,TIGR01896,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-1370633_30	phrog_3657	352.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1370633_30	1567013.A0A0A7S0A9_9CAUD	229.0	0	N/A	N/A
KOfam	UHGV-1370633_31	K03111	114.4	1.7e-33	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1370633_31	phrog_44	118.7	5.7e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370633_31	UniRef90_A0A2U1BEJ1	133.0	3.92e-37	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1370633_31	1007096.BAGW01000007_gene1922	97.4	8.31e-24	Single-strand binding protein family	N/A
Pfam	UHGV-1370633_31	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1370633_31	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1370633_31	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1370633_31	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1370633_31	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1370633_32	phrog_3490	123.2	1.9e-36	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370633_32	UniRef90_A0A1C6FNL5	160.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1370633_32	357809.Cphy_2986	144.0	6.10966e-42	N/A	N/A
Pfam	UHGV-1370633_32	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-1370633_32	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-1370633_33	K02316	77.4	2e-22	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-1370633_33	phrog_11992	84.8	1.4e-24	N/A	unknown function
UniRef90	UHGV-1370633_33	UniRef90_A0A845N2C1	87.0	9.71e-18	DNA primase	N/A
eggNOG-mapper	UHGV-1370633_33	718252.FP2_18240	86.7	2.28e-18	CHC2 zinc finger	N/A
PADLOC	UHGV-1370633_33	drt-cluster192	60.6	3.7e-17	DRT	DRT
Pfam	UHGV-1370633_33	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-1370633_33	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-1370633_33	PF01807	N/A	N/A	N/A	N/A
PHROG	UHGV-1370633_34	phrog_8841	449.2	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370633_34	UniRef90_A0A1C6FPW9	448.0	0	Superfamily II helicase and inactivated derivatives	N/A
eggNOG-mapper	UHGV-1370633_34	742738.HMPREF9460_02495	399.0	0	N/A	N/A
Pfam	UHGV-1370633_34	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-1370633_34	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-1370633_34	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1370633_34	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
UniRef90	UHGV-1370633_35	UniRef90_UPI001D07B715	94.4	4.06e-20	DNA-packaging protein	N/A
structural_annotation	UHGV-1370633_35	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1370633_39	K21528	142.9	1.3999e-42	gin; serine recombinase [EC:3.1.22.- 6.5.1.-]	N/A
PHROG	UHGV-1370633_39	phrog_125	188.3	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370633_39	UniRef90_R7EUM7	258.0	0	Putative site-specific recombinase	N/A
eggNOG-mapper	UHGV-1370633_39	1123288.SOV_1c03900	234.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1370633_39	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-1370633_39	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1370633_39	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-1370633_40	phrog_38	179.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-1370633_40	UniRef90_UPI000419A6BC	374.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1370633_40	1232453.BAIF02000058_gene1623	382.0	0	TIGRFAM Phage	N/A
COG	UHGV-1370633_40	COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-1370633_41	phrog_64	168.9	0	portal protein	head and packaging
UniRef90	UHGV-1370633_41	UniRef90_A0A7X9GQD9	389.0	0	Phage portal protein (Fragment)	N/A
eggNOG-mapper	UHGV-1370633_41	1121866.AUGK01000003_gene1429	354.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1370633_41	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1370633_41	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-1370633_42	UniRef90_A0A7C7EK05	61.2	0.0000000268	N/A	N/A
structural_annotation	UHGV-1370633_42	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1370633_43	phrog_247	243.8	0	major head protein	head and packaging
UniRef90	UHGV-1370633_43	UniRef90_UPI000A1C9CC1	439.0	0	coat protein	N/A
eggNOG-mapper	UHGV-1370633_43	903814.ELI_3208	432.0	0	N/A	N/A
Pfam	UHGV-1370633_43	PF20036	N/A	N/A	Major capsid protein 13-like	Gp13-like
structural_annotation	UHGV-1370633_43	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1370633_44	UniRef90_A0A1V5X694	97.4	3.95e-24	Phage gp6-like head-tail connector protein	N/A
structural_annotation	UHGV-1370633_44	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1370633_45	1298920.KI911353_gene2656	73.9	0.0000000000000033	N/A	N/A
structural_annotation	UHGV-1370633_47	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-1370633_48	phrog_158	50.6	0.000000000000035	major tail protein	tail
eggNOG-mapper	UHGV-1370633_48	469596.HMPREF9488_01310	112.0	1.75e-29	N/A	N/A
structural_annotation	UHGV-1370633_48	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-1370633_49	UniRef90_UPI001D0975F6	66.6	0.00000000000667	N/A	N/A
PHROG	UHGV-1370633_51	phrog_1535	88.7	3.1e-34	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1370633_51	1121866.AUGK01000003_gene1437	178.0	1.24996e-42	phage tail tape measure protein	N/A
COG	UHGV-1370633_51	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-1370633_52	phrog_1194	75.0	9.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-1370633_52	1232449.BAHV02000010_gene2724	107.0	2.87e-28	N/A	N/A
structural_annotation	UHGV-1370633_52	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1370633_53	phrog_13879	186.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1370633_53	411902.CLOBOL_00124	293.0	0	N/A	N/A
structural_annotation	UHGV-1370633_53	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1370633_54	756499.Desde_2424	62.0	0.000000000839	N/A	N/A
PHROG	UHGV-1370633_55	phrog_2295	75.3	7.4e-22	N/A	unknown function
eggNOG-mapper	UHGV-1370633_55	439375.Oant_2297	56.6	0.0000089	Phage tail-collar fibre protein	N/A
Pfam	UHGV-1370633_55	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
COG	UHGV-1370633_55	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-1370633_55	PF12810,PF20944	N/A	N/A	N/A	N/A
PHROG	UHGV-1370633_57	phrog_18593	126.3	2e-37	N/A	unknown function
UniRef90	UHGV-1370633_57	UniRef90_A0A2Y9CAD1	167.0	0	Carbohydrate binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1370633_57	411460.RUMTOR_02099	141.0	5.61e-40	N/A	N/A
Pfam	UHGV-1370633_57	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
PHROG	UHGV-1370633_58	phrog_9428	155.7	0	N/A	unknown function
UniRef90	UHGV-1370633_58	UniRef90_A0A7X5DY06	130.0	2.83e-37	Serine/threonine protein kinase	N/A
eggNOG-mapper	UHGV-1370633_58	552398.HMPREF0866_01584	156.0	0	N/A	N/A
eggNOG-mapper	UHGV-1370633_59	1519439.JPJG01000060_gene1892	79.0	0.00000000000366	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-1370633_59	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-1370633_59	PF10651,NF033814	N/A	N/A	N/A	N/A
KOfam	UHGV-1370633_61	K07273	160.7	0	acm; lysozyme	N/A
PHROG	UHGV-1370633_61	phrog_291	133.2	2.6e-39	endolysin	lysis
UniRef90	UHGV-1370633_61	UniRef90_Q8KU11	131.0	6.24e-33	LycA	N/A
eggNOG-mapper	UHGV-1370633_61	445335.CBN_0828	131.0	1.05e-33	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1370633_61	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1370633_61	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-1370633_61	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1370633_62	phrog_6918	60.9	1.9e-17	holin	lysis
UniRef90	UHGV-1370633_62	UniRef90_G9YP36	59.3	0.0000000051	Phage holin, LL-H family	N/A
eggNOG-mapper	UHGV-1370633_62	1236976.JCM16418_1614	52.4	0.000000352	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1370633_62	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-1370633_62	PF09682,TIGR01673	N/A	N/A	N/A	N/A
UniRef90	UHGV-1370633_63	UniRef90_A0A843IZ65	63.5	0.0000000000091	Sigma70_r4 domain-containing protein	N/A
structural_annotation	UHGV-1370633_63	PF04545,MF_00245,NF001074,COG2739	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1370633_66	PF02255,TIGR00823,COG1447	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1370633_68	1408324.JNJK01000028_gene1590	80.9	0.00000000000000193	N/A	N/A