UHGV-1370929 (vOTU-000646)

Viral Genome: UHGV-1370929

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1370929
vOTU ID	vOTU-000646
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0290869
Associated BioSample	SAMN02334065
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9811
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17
Jumbo phage	No

Genome content
Genome length (bp)	44,359
GC content	58.42%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	57
CDS density	95%
Average CDS length (bps)	738.37
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1370929_2	phrog_31398	51.6	0.0000000000000077	N/A	unknown function
eggNOG-mapper	UHGV-1370929_2	1160721.RBI_I01572	65.5	0.00000000321	N/A	N/A
Pfam	UHGV-1370929_2	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
PHROG	UHGV-1370929_3	phrog_22978	589.9	0	N/A	unknown function
UniRef90	UHGV-1370929_3	UniRef90_A0A416JVP5	658.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-1370929_3	1410650.JHWL01000003_gene2814	447.0	0	N/A	N/A
Pfam	UHGV-1370929_3	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
Pfam	UHGV-1370929_3	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
PHROG	UHGV-1370929_4	phrog_2649	72.9	7.7e-21	endolysin	lysis
UniRef90	UHGV-1370929_4	UniRef90_A0A358ARU4	281.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1370929_4	1410650.JHWL01000003_gene2815	155.0	5e-40	N/A	N/A
Pfam	UHGV-1370929_4	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
PHROG	UHGV-1370929_6	phrog_511	255.4	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1370929_6	718252.FP2_29250	363.0	0	N/A	N/A
structural_annotation	UHGV-1370929_6	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-1370929_7	phrog_12105	125.3	3.1e-37	N/A	unknown function
eggNOG-mapper	UHGV-1370929_7	1226322.HMPREF1545_03850	67.4	0.00000000000111	N/A	N/A
PHROG	UHGV-1370929_8	phrog_15239	54.7	0.0000000000000017	N/A	unknown function
PHROG	UHGV-1370929_9	phrog_1357	284.6	0	major head protein	head and packaging
UniRef90	UHGV-1370929_9	UniRef90_A0A358AS35	430.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1370929_9	657322.FPR_02330	335.0	0	N/A	N/A
NCBIFam	UHGV-1370929_9	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1370929_9	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1370929_10	phrog_13908	284.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1370929_10	1410650.JHWL01000003_gene2831	152.0	5.32998e-41	N/A	N/A
KOfam	UHGV-1370929_11	K07584	75.3	1e-21	N/A	N/A
PHROG	UHGV-1370929_11	phrog_4478	58.5	4.1e-17	peptidase	other
UniRef90	UHGV-1370929_11	UniRef90_UPI001A8C93AD	58.5	0.0000000105	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-1370929_11	555079.Toce_0764	61.6	0.000000000108	Cysteine protease Prp	N/A
Pfam	UHGV-1370929_11	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-1370929_11	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1370929_11	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1370929_12	phrog_156	350.7	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1370929_12	748224.HMPREF9436_02547	612.0	0	N/A	N/A
structural_annotation	UHGV-1370929_12	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-1370929_13	K06909	132.6	4.1e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1370929_13	phrog_979	149.5	1.4013e-45	terminase large subunit	head and packaging
UniRef90	UHGV-1370929_13	UniRef90_A0A2V2GR60	645.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-1370929_13	1410650.JHWL01000003_gene2834	588.0	0	N/A	N/A
Pfam	UHGV-1370929_13	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1370929_13	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1370929_13	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1370929_17	phrog_25567	69.2	4.6e-20	N/A	unknown function
eggNOG-mapper	UHGV-1370929_17	1235798.C817_04600	49.3	0.00000763	N/A	N/A
PHROG	UHGV-1370929_21	phrog_478	121.5	4e-36	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-1370929_21	UniRef90_A0A373Q857	167.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1370929_21	1111121.HMPREF1247_0834	99.4	5.06e-25	N/A	N/A
KOfam	UHGV-1370929_23	K02536	41.0	2.4e-21	lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]	N/A
PHROG	UHGV-1370929_23	phrog_5353	60.8	1.2e-18	N/A	unknown function
Pfam	UHGV-1370929_23	PF00132	N/A	N/A	Bacterial transferase hexapeptide (six repeats)	Hexapep
structural_annotation	UHGV-1370929_23	MF_00387,TIGR03992,COG2171	N/A	N/A	N/A	N/A
KOfam	UHGV-1370929_28	K01160	40.6	0.00000000007	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1370929_28	phrog_1682	78.7	9.6e-23	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370929_28	UniRef90_U2Q8K8	137.0	1.84e-39	Crossover junction endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1370929_28	1226322.HMPREF1545_04070	137.0	3.08e-40	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-1370929_28	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1370929_28	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1370929_29	phrog_9474	105.7	4.9e-31	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370929_29	UniRef90_A0A1F8UZU6	90.9	1.05e-17	DnaB_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1370929_29	411483.FAEPRAA2165_01877	75.9	0.000000000000413	HNH endonuclease	N/A
COG	UHGV-1370929_29	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1370929_29	PF09681,PF07261,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-1370929_30	K07455	178.9	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1370929_30	phrog_148	190.8	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370929_30	UniRef90_A0A7X7Z0P1	359.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-1370929_30	272626.lin0085	213.0	0	Recombinational DNA repair protein (RecE pathway)	N/A
Pfam	UHGV-1370929_30	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1370929_30	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1370929_30	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1370929_30	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1370929_31	phrog_434	262.2	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370929_31	UniRef90_A0A7I8D1X6	311.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1370929_31	428125.CLOLEP_01823	297.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-1370929_31	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1370929_31	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1370929_31	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1370929_31	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
Pfam	UHGV-1370929_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1370929_32	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
Pfam	UHGV-1370929_34	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
PHROG	UHGV-1370929_38	phrog_14556	41.3	0.000000000018	N/A	unknown function
eggNOG-mapper	UHGV-1370929_38	573413.Spirs_1961	65.9	0.0000000000423	DNA RNA non-specific endonuclease	N/A
COG	UHGV-1370929_38	COG1864	N/A	N/A	DNA/RNA endonuclease G, NUC1	N/A
KOfam	UHGV-1370929_39	K22300	56.3	7.8e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1370929_39	phrog_2967	51.3	0.000000000000026	transcriptional regulator	transcription regulation
UniRef90	UHGV-1370929_39	UniRef90_A0A6N7WRP8	105.0	6.09e-27	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1370929_39	97138.C820_01960	100.0	1.6e-25	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1370929_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1370929_39	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1370929_39	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1370929_41	phrog_8	42.3	0.0000000000092	transcriptional regulator	transcription regulation
Pfam	UHGV-1370929_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
KOfam	UHGV-1370929_42	K14059	233.4	0	int; integrase	N/A
PHROG	UHGV-1370929_42	phrog_1	220.0	0	integrase	integration and excision
UniRef90	UHGV-1370929_42	UniRef90_A0A7I8D1X3	335.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1370929_42	1203606.HMPREF1526_02099	265.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1370929_42	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1370929_42	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1370929_42	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1370929_42	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1370929_44	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1370929_45	phrog_16490	50.6	0.000000000000041	N/A	unknown function
PHROG	UHGV-1370929_47	phrog_21718	54.8	0.0000000000000017	N/A	unknown function
eggNOG-mapper	UHGV-1370929_47	476272.RUMHYD_01768	62.4	0.000000000151	N/A	N/A
PHROG	UHGV-1370929_49	phrog_6918	58.0	1.6e-16	holin	lysis
UniRef90	UHGV-1370929_49	UniRef90_A0A1M4Z2U8	53.5	0.000000457	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
eggNOG-mapper	UHGV-1370929_49	1203606.HMPREF1526_01929	68.9	0.0000000000000777	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1370929_49	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
PHROG	UHGV-1370929_51	phrog_4105	88.0	7.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-1370929_51	33035.JPJF01000043_gene996	81.3	3.21e-18	N/A	N/A
eggNOG-mapper	UHGV-1370929_52	97138.C820_00236	107.0	9.47e-23	PFAM Phage late control gene D protein (GPD)	N/A
Pfam	UHGV-1370929_52	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-1370929_52	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1370929_52	COG4193	N/A	N/A	Beta- N-acetylglucosaminidase	N/A
PHROG	UHGV-1370929_53	phrog_18593	75.6	7.4e-22	N/A	unknown function
UniRef90	UHGV-1370929_53	UniRef90_UPI001EDF4BF9	162.0	0	chitinase	N/A
eggNOG-mapper	UHGV-1370929_53	552398.HMPREF0866_03095	159.0	0	N/A	N/A
Pfam	UHGV-1370929_53	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-1370929_53	PF14600	N/A	N/A	N/A	N/A
Pfam	UHGV-1370929_55	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
structural_annotation	UHGV-1370929_55	PF21722	N/A	N/A	N/A	N/A
KOfam	UHGV-1370929_57	K06237	55.5	1.9e-16	COL4A; collagen type IV alpha	N/A
PHROG	UHGV-1370929_57	phrog_819	73.6	1.7e-21	tail protein	tail
eggNOG-mapper	UHGV-1370929_57	1232443.BAIA02000078_gene14	76.6	0.0000000000029	nuclear chromosome segregation	N/A
Pfam	UHGV-1370929_57	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1370929_57	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A