UHGV-1371543 (vOTU-004535)

Viral Genome: UHGV-1371543

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1371543
vOTU ID	vOTU-004535
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0283452
Associated BioSample	SAMEA3664602
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9763
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.04
Jumbo phage	No

Genome content
Genome length (bp)	42,767
GC content	38.02%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	72
CDS density	89%
Average CDS length (bps)	527.00
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1371543_1	563031.HMPREF0666_01114	55.1	0.00000189	N/A	N/A
UniRef90	UHGV-1371543_2	UniRef90_A0A098GES5	94.4	3.2e-23	Putative phage associated protein	N/A
structural_annotation	UHGV-1371543_2	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
PHROG	UHGV-1371543_3	phrog_298	80.7	1e-23	exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1371543_3	1122981.AUME01000026_gene554	70.5	0.0000000000173	YqaJ viral recombinase family	N/A
COG	UHGV-1371543_3	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1371543_3	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
Pfam	UHGV-1371543_7	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
NCBIFam	UHGV-1371543_7	TIGR01439.1	N/A	N/A	transcriptional regulator, AbrB family	N/A
PHROG	UHGV-1371543_9	phrog_20016	147.8	2.94273e-44	N/A	unknown function
UniRef90	UHGV-1371543_9	UniRef90_A0A345BPX4	138.0	2.23e-39	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-1371543_9	1235790.C805_00062	142.0	1.60995e-41	N/A	N/A
structural_annotation	UHGV-1371543_9	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1371543_10	phrog_16490	66.9	3.5e-20	N/A	unknown function
UniRef90	UHGV-1371543_10	UniRef90_A0A7M1RQL8	81.3	0.0000000000000103	Spike protein/glycoprotein	N/A
eggNOG-mapper	UHGV-1371543_10	445972.ANACOL_01880	62.8	0.00000000429	N/A	N/A
PHROG	UHGV-1371543_12	phrog_22984	47.4	0.00000000000036	N/A	unknown function
PHROG	UHGV-1371543_13	phrog_21718	84.8	1e-24	N/A	unknown function
eggNOG-mapper	UHGV-1371543_13	397290.C810_05210	67.0	0.0000000000162	N/A	N/A
PHROG	UHGV-1371543_14	phrog_3754	84.5	1.2e-24	N/A	unknown function
eggNOG-mapper	UHGV-1371543_14	476272.RUMHYD_01764	149.0	4.2039e-45	N/A	N/A
Pfam	UHGV-1371543_16	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-1371543_16	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
structural_annotation	UHGV-1371543_16	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-1371543_17	cluster_17974	41.2	0.0000000803	NA	N/A
PHROG	UHGV-1371543_19	phrog_443	58.5	2e-16	holin	lysis
UniRef90	UHGV-1371543_19	UniRef90_A0A1M6RHE6	88.6	8.25e-22	Holin, r1t family	N/A
eggNOG-mapper	UHGV-1371543_19	1469948.JPNB01000002_gene3855	81.6	8.31e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1371543_19	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1371543_19	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-1371543_20	K01447	103.6	2.6e-30	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1371543_20	phrog_3088	232.3	0	amidase	lysis
UniRef90	UHGV-1371543_20	UniRef90_A0A8F2F1D1	260.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1371543_20	428125.CLOLEP_01782	256.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1371543_20	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1371543_20	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1371543_20	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1371543_21	1120998.AUFC01000030_gene2248	68.9	0.00000000139	N/A	N/A
PHROG	UHGV-1371543_22	phrog_23837	65.5	8.3e-19	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1371543_22	762211.BSTEL_0610	69.7	0.000000000153	N/A	N/A
PHROG	UHGV-1371543_23	phrog_24267	95.7	6e-28	N/A	unknown function
UniRef90	UHGV-1371543_23	UniRef90_G4Q8U0	76.3	0.000000000000135	Side tail fiber protein from lambdoid prophage Rac	N/A
eggNOG-mapper	UHGV-1371543_23	742742.HMPREF9452_00376	108.0	4.77e-28	tail collar domain protein	N/A
COG	UHGV-1371543_23	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1371543_23	COG4675	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1371543_24	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1371543_25	phrog_1194	53.0	0.0000000000000053	N/A	unknown function
UniRef90	UHGV-1371543_25	UniRef90_A0A8D9PDT1	84.7	2.2e-18	YolD-like protein	N/A
eggNOG-mapper	UHGV-1371543_25	483218.BACPEC_01144	96.3	1.18e-23	N/A	N/A
Pfam	UHGV-1371543_25	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1371543_25	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1371543_26	phrog_1535	106.4	2.3e-33	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1371543_26	1121333.JMLH01000047_gene1009	94.4	6.03e-17	N/A	N/A
eggNOG-mapper	UHGV-1371543_28	1211844.CBLM010000023_gene989	151.0	1.4013e-44	N/A	N/A
structural_annotation	UHGV-1371543_28	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1371543_29	PF06141	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1371543_31	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1371543_33	phrog_212	256.1	0	major head protein	head and packaging
UniRef90	UHGV-1371543_33	UniRef90_A0A354MR33	447.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1371543_33	1232449.BAHV02000010_gene2714	365.0	0	N/A	N/A
structural_annotation	UHGV-1371543_33	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1371543_35	phrog_64	148.4	2.38221e-44	portal protein	head and packaging
UniRef90	UHGV-1371543_35	UniRef90_A0A7X7EMS9	305.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1371543_35	428127.EUBDOL_01552	205.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1371543_35	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1371543_35	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1371543_36	phrog_38	74.4	1.1e-21	terminase large subunit	head and packaging
Pfam	UHGV-1371543_36	PF14890	N/A	N/A	Intein splicing domain	Intein_splicing
NCBIFam	UHGV-1371543_36	TIGR01443.1	N/A	N/A	intein C-terminal splicing region	N/A
COG	UHGV-1371543_36	COG1241	N/A	N/A	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	N/A
PHROG	UHGV-1371543_37	phrog_801	98.9	7.3e-29	endolysin; inhibits RNA polymerase	lysis
UniRef90	UHGV-1371543_37	UniRef90_A0A7X8EV86	130.0	1.1e-37	N/A	N/A
eggNOG-mapper	UHGV-1371543_37	881915.E1Y3U1_9CAUD	74.7	7.35e-16	Cytidine and deoxycytidylate deaminase zinc-binding region	N/A
Pfam	UHGV-1371543_37	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-1371543_37	PF18909	N/A	N/A	N/A	N/A
KOfam	UHGV-1371543_41	K03466	215.0	0	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	N/A
PHROG	UHGV-1371543_41	phrog_1358	171.0	0	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1371543_41	UniRef90_A0A1E5NH19	166.0	3.92364e-44	FtsK domain-containing protein	N/A
eggNOG-mapper	UHGV-1371543_41	1121914.AUDW01000002_gene682	160.0	3.47004e-41	Belongs to the FtsK SpoIIIE SftA family	N/A
PADLOC	UHGV-1371543_41	SspH_00004	139.8	2.20004e-41	SspH	SSP
Pfam	UHGV-1371543_41	PF01580	N/A	N/A	FtsK/SpoIIIE family	FtsK_SpoIIIE
COG	UHGV-1371543_41	COG1674	N/A	N/A	DNA segregation ATPase FtsK/SpoIIIE or related protein	N/A
structural_annotation	UHGV-1371543_41	PF01580,PF17854,MF_01076,NF041214,COG0433	N/A	N/A	N/A	N/A
Pfam	UHGV-1371543_43	PF02796	N/A	N/A	Helix-turn-helix domain of resolvase	HTH_7
PHROG	UHGV-1371543_44	phrog_4973	57.0	3.5e-16	N/A	unknown function
UniRef90	UHGV-1371543_44	UniRef90_A0A3R6RL03	56.2	0.0000000097	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1371543_44	40215.BBOS01000010_gene3125	51.2	0.000000148	Helix-turn-helix domain	N/A
Pfam	UHGV-1371543_44	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1371543_44	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
KOfam	UHGV-1371543_45	K14060	141.4	7.90052e-42	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1371543_45	phrog_125	136.0	2.8e-40	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1371543_45	UniRef90_A0A4P7KZQ0	84.3	9.01e-17	DNA-invertase from lambdoid prophage Rac	N/A
eggNOG-mapper	UHGV-1371543_45	911239.CF149_19331	73.6	0.000000000000138	COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-1371543_45	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1371543_45	PF13518	N/A	N/A	Helix-turn-helix domain	HTH_28
COG	UHGV-1371543_45	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1371543_45	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-1371543_52	UniRef90_UPI001D073C08	57.0	0.00000000485	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-1371543_52	PF14354	N/A	N/A	N/A	N/A
PHROG	UHGV-1371543_53	phrog_10714	44.3	0.0000000000023	N/A	unknown function
PHROG	UHGV-1371543_55	phrog_10714	40.5	0.000000000038	N/A	unknown function
eggNOG-mapper	UHGV-1371543_55	1120998.AUFC01000030_gene2222	47.8	0.00000657	N/A	N/A
PHROG	UHGV-1371543_56	phrog_3136	115.1	2.2e-34	N/A	unknown function
UniRef90	UHGV-1371543_56	UniRef90_UPI001C02A61B	131.0	2.03e-34	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1371543_56	1007096.BAGW01000031_gene120	56.2	0.000000895	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1371543_56	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1371543_56	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1371543_57	phrog_13321	60.6	4.1e-18	N/A	unknown function
UniRef90	UHGV-1371543_57	UniRef90_UPI00030D2C45	322.0	0	radical SAM protein	N/A
eggNOG-mapper	UHGV-1371543_57	1007096.BAGW01000031_gene122	322.0	0	PFAM Radical SAM	N/A
Pfam	UHGV-1371543_57	PF04055	N/A	N/A	Radical SAM superfamily	Radical_SAM
COG	UHGV-1371543_57	COG1533	N/A	N/A	DNA repair photolyase	N/A
structural_annotation	UHGV-1371543_57	PF20903,MF_00917,NF033668,COG4422	N/A	N/A	N/A	N/A
KOfam	UHGV-1371543_59	K00558	42.2	0.0000000000074	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1371543_59	phrog_17284	72.0	8e-21	N/A	unknown function
UniRef90	UHGV-1371543_59	UniRef90_A0A350S1S8	102.0	8.67e-26	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1371543_59	1300150.EMQU_0778	96.3	1.87e-22	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1371543_59	oMTase_00023	75.2	4.1e-28	orphan methyltransferase	RM
Pfam	UHGV-1371543_59	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1371543_59	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-1371543_60	K00558	145.9	2.29813e-43	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1371543_60	phrog_116	147.8	5.04467e-44	DNA methyltransferase	other
UniRef90	UHGV-1371543_60	UniRef90_A0A1Q6KI63	306.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1371543_60	397290.C810_05213	296.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1371543_60	MTase_II_00058	158.6	0	Type II methyltransferase	RM
Pfam	UHGV-1371543_60	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1371543_60	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1371543_60	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-1371543_65	K07451	55.6	0.000000000000001	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1371543_65	phrog_1271	59.5	8.7e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1371543_65	UniRef90_A0A644YGW1	133.0	3.98e-37	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-1371543_65	394503.Ccel_3167	117.0	2.03e-31	N/A	N/A
Pfam	UHGV-1371543_65	PF01844	N/A	N/A	HNH endonuclease	HNH
structural_annotation	UHGV-1371543_65	PF01844,NF008448,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-1371543_67	phrog_10469	104.0	1.4e-30	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1371543_67	397288.C806_03002	108.0	5.03e-25	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
COG	UHGV-1371543_67	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1371543_67	PF02002,MF_01909,TIGR01610,COG1675	N/A	N/A	N/A	N/A
KOfam	UHGV-1371543_69	K03111	123.2	3.7e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1371543_69	phrog_44	125.3	5.6e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1371543_69	UniRef90_A0A6N7TNV3	117.0	5.51e-31	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1371543_69	748224.HMPREF9436_03359	116.0	2.63e-31	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1371543_69	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1371543_69	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1371543_69	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1371543_69	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1371543_69	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1371543_70	phrog_3490	88.7	7.7e-26	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1371543_70	UniRef90_A0A7U9JY91	102.0	8.54e-25	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1371543_70	1304866.K413DRAFT_4617	102.0	1.43e-25	ERCC4 domain	N/A
Pfam	UHGV-1371543_70	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-1371543_70	PF02732,NF040956	N/A	N/A	N/A	N/A
PHROG	UHGV-1371543_72	phrog_561	112.8	2.5e-33	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1371543_72	UniRef90_UPI001D07CFE1	148.0	4.16001e-40	recombinase RecT	N/A
eggNOG-mapper	UHGV-1371543_72	563192.HMPREF0179_00147	146.0	1.2e-39	N/A	N/A
structural_annotation	UHGV-1371543_72	NF007351	N/A	N/A	N/A	N/A