UHGV-1372296 (vOTU-004443)

Viral Genome: UHGV-1372296

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1372296
vOTU ID	vOTU-004443
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0283214
Associated BioSample	SAMEA3665122
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9825
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.91
Jumbo phage	No

Genome content
Genome length (bp)	42,742
GC content	54.15%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	77
CDS density	93%
Average CDS length (bps)	515.14
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1372296_3	phrog_13256	67.2	1.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-1372296_3	1226322.HMPREF1545_00132	73.6	2.37e-16	N/A	N/A
PHROG	UHGV-1372296_4	phrog_14030	142.7	2.29953e-42	N/A	unknown function
UniRef90	UHGV-1372296_4	UniRef90_R6LL81	240.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-1372296_4	1121866.AUGK01000003_gene1444	92.8	6.95e-19	amidase activity	N/A
COG	UHGV-1372296_4	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-1372296_5	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1372296_8	phrog_25567	43.9	0.0000000000031	N/A	unknown function
UniRef90	UHGV-1372296_8	UniRef90_UPI00164AED9E	92.8	3.35e-22	helix-turn-helix domain-containing protein	N/A
COG	UHGV-1372296_8	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-1372296_8	PF13560,NF040522,COG2944	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1372296_10	760568.Desku_0885	58.5	0.000000065	N/A	N/A
structural_annotation	UHGV-1372296_10	PF14528,PF05204,MF_01420,TIGR00647,COG3780	N/A	N/A	N/A	N/A
PHROG	UHGV-1372296_11	phrog_3754	95.1	7e-28	N/A	unknown function
eggNOG-mapper	UHGV-1372296_11	476272.RUMHYD_01764	164.0	0	N/A	N/A
PHROG	UHGV-1372296_12	phrog_21718	84.6	8e-25	N/A	unknown function
eggNOG-mapper	UHGV-1372296_12	397290.C810_05210	60.1	0.00000000443	N/A	N/A
PHROG	UHGV-1372296_13	phrog_22984	75.9	8.2e-23	N/A	unknown function
PHROG	UHGV-1372296_14	phrog_16490	122.7	5.6e-37	N/A	unknown function
eggNOG-mapper	UHGV-1372296_14	1408437.JNJN01000043_gene803	130.0	2.92e-34	N/A	N/A
PHROG	UHGV-1372296_15	phrog_20016	196.3	0	N/A	unknown function
UniRef90	UHGV-1372296_15	UniRef90_A0A285PT46	187.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1372296_15	1226322.HMPREF1545_00077	169.0	0	N/A	N/A
structural_annotation	UHGV-1372296_15	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1372296_16	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1372296_17	1226322.HMPREF1545_00079	110.0	6.91e-30	N/A	N/A
KOfam	UHGV-1372296_18	K14059	131.1	1.4e-38	int; integrase	N/A
PHROG	UHGV-1372296_18	phrog_1	142.2	4.40008e-42	integrase	integration and excision
UniRef90	UHGV-1372296_18	UniRef90_UPI00195CC1EE	380.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1372296_18	1235835.C814_03141	196.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1372296_18	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1372296_18	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1372296_18	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-1372296_19	K07729	41.2	0.000000000026	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-1372296_19	UniRef90_A0A8D9UHA6	88.6	1.66e-18	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-1372296_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1372296_19	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1372296_19	PF12844	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1372296_21	1280682.AUKA01000018_gene2337	147.0	1.5e-39	N/A	N/A
Pfam	UHGV-1372296_21	PF12773	N/A	N/A	Double zinc ribbon	DZR
structural_annotation	UHGV-1372296_21	PF02805	N/A	N/A	N/A	N/A
PHROG	UHGV-1372296_22	phrog_8	47.3	0.00000000000051	transcriptional regulator	transcription regulation
UniRef90	UHGV-1372296_22	UniRef90_UPI001E54DE4F	80.9	1.28e-17	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1372296_22	1378168.N510_01712	66.6	0.0000000000113	N/A	N/A
Pfam	UHGV-1372296_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1372296_22	PF12844,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1372296_23	UniRef90_A0A1C7FQD9	88.2	1.63e-21	Transcriptional regulator	N/A
Pfam	UHGV-1372296_23	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1372296_23	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1372296_24	UniRef90_UPI000F0633F9	61.2	0.0000000000535	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1372296_24	1235835.C814_03153	77.8	3.03e-18	N/A	N/A
structural_annotation	UHGV-1372296_24	PF09035,NF040990	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1372296_25	PF10548	N/A	N/A	N/A	N/A
PHROG	UHGV-1372296_30	phrog_124	112.4	3.9e-33	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1372296_30	UniRef90_A0A2Z4QBI4	389.0	0	AAA domain protein	N/A
eggNOG-mapper	UHGV-1372296_30	445972.ANACOL_00146	227.0	0	AAA domain	N/A
Pfam	UHGV-1372296_30	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-1372296_30	COG1100	N/A	N/A	GTPase SAR1 family domain	N/A
structural_annotation	UHGV-1372296_30	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
UniRef90	UHGV-1372296_31	UniRef90_A0A2Z4QA33	240.0	0	PD-(D/E)XK nuclease	N/A
eggNOG-mapper	UHGV-1372296_31	718252.FP2_01050	132.0	8.25e-36	N/A	N/A
structural_annotation	UHGV-1372296_31	PF10926,MF_03030,TIGR04328,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-1372296_32	phrog_378	94.0	1.9e-27	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1372296_32	UniRef90_UPI001E43F9BA	71.2	0.00000000000111	N/A	N/A
eggNOG-mapper	UHGV-1372296_32	1423732.BALS01000134_gene393	65.5	0.0000000000437	N/A	N/A
structural_annotation	UHGV-1372296_32	PF05037,NF004948	N/A	N/A	N/A	N/A
PHROG	UHGV-1372296_33	phrog_16304	56.2	4.5e-16	N/A	unknown function
UniRef90	UHGV-1372296_33	UniRef90_A0A3D3Y5P0	220.0	0	N/A	N/A
eggNOG-mapper	UHGV-1372296_33	1226322.HMPREF1545_00016	54.3	0.00000658	HNH endonuclease	N/A
Pfam	UHGV-1372296_33	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1372296_33	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1372296_33	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1372296_35	K00558	159.7	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1372296_35	phrog_363	244.9	0	DNA methyltransferase	other
UniRef90	UHGV-1372296_35	UniRef90_G4KRB8	350.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-1372296_35	693746.OBV_01900	350.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-1372296_35	MTase_II_00058	124.3	1.2e-36	Type II methyltransferase	RM
Pfam	UHGV-1372296_35	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1372296_35	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1372296_35	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1372296_35	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1372296_36	PF05082	N/A	N/A	N/A	N/A
PHROG	UHGV-1372296_41	phrog_355	59.1	7.7e-17	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1372296_41	UniRef90_A0A413FXK8	109.0	3.44e-29	N/A	N/A
eggNOG-mapper	UHGV-1372296_41	573061.Clocel_3558	77.4	3.33e-17	N/A	N/A
Pfam	UHGV-1372296_41	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-1372296_41	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-1372296_41	PF14359,MF_03036,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-1372296_42	phrog_38832	55.5	7.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-1372296_42	665956.HMPREF1032_00143	55.5	0.000000344	N/A	N/A
structural_annotation	UHGV-1372296_42	PF11717,TIGR02450	N/A	N/A	N/A	N/A
PHROG	UHGV-1372296_46	phrog_1770	58.7	1.2e-16	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1372296_46	536233.CLO_1822	128.0	2.02e-35	N/A	N/A
structural_annotation	UHGV-1372296_46	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1372296_49	742738.HMPREF9460_02503	90.9	1.37e-22	N/A	N/A
structural_annotation	UHGV-1372296_49	PF06530,MF_00674,TIGR01636,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-1372296_50	K07319	122.8	3.1e-36	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-1372296_50	phrog_498	441.4	0	DNA methyltransferase	other
UniRef90	UHGV-1372296_50	UniRef90_A0A810Q3Z7	441.0	0	N6_N4_Mtase domain-containing protein	N/A
eggNOG-mapper	UHGV-1372296_50	1423758.BN55_01455	428.0	0	DNA methylase	N/A
PADLOC	UHGV-1372296_50	MTase_II_00015	231.8	0	Type II methyltransferase	RM
Pfam	UHGV-1372296_50	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-1372296_50	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1372296_50	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1372296_50	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-1372296_52	K06909	103.5	2.5e-30	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1372296_52	phrog_10250	116.4	2.1e-34	N/A	unknown function
UniRef90	UHGV-1372296_52	UniRef90_A0A1I3QR69	462.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-1372296_52	748224.HMPREF9436_03341	336.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1372296_52	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1372296_52	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1372296_52	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1372296_52	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1372296_52	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1372296_53	phrog_64	154.3	0	portal protein	head and packaging
UniRef90	UHGV-1372296_53	UniRef90_UPI001AA0B7FF	498.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1372296_53	673376.F2VHW1_9CAUD	219.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1372296_53	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1372296_53	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1372296_54	PF10651,NF038186	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1372296_56	411471.SUBVAR_06929	316.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-1372296_56	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
PHROG	UHGV-1372296_57	phrog_37900	325.4	0	N/A	unknown function
UniRef90	UHGV-1372296_57	UniRef90_UPI001C3EA4DF	352.0	0	N/A	N/A
eggNOG-mapper	UHGV-1372296_57	552398.HMPREF0866_03098	254.0	0	N/A	N/A
Pfam	UHGV-1372296_57	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-1372296_57	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-1372296_57	PF19789	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1372296_59	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-1372296_60	phrog_115	119.0	3.9e-35	minor head protein	head and packaging
UniRef90	UHGV-1372296_60	UniRef90_A0A810PSD3	442.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1372296_60	1504822.CCNO01000013_gene286	211.0	0	cell adhesion	N/A
Pfam	UHGV-1372296_60	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1372296_60	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1372296_60	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1372296_60	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1372296_61	phrog_5	82.7	6.1e-24	tail completion or Neck1 protein	connector
UniRef90	UHGV-1372296_61	UniRef90_UPI0018AA0B5A	194.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1372296_61	1123309.AQYB01000018_gene814	98.6	1.19e-24	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1372296_61	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1372296_61	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1372296_61	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1372296_62	phrog_194	45.3	0.0000000000016	head scaffolding protein	head and packaging
UniRef90	UHGV-1372296_62	UniRef90_A0A6B9SU02	148.0	1.12006e-41	Fibronectin autolysin	N/A
eggNOG-mapper	UHGV-1372296_62	476272.RUMHYD_01775	58.9	0.0000000478	COG NOG36366 non supervised orthologous group	N/A
structural_annotation	UHGV-1372296_62	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1372296_63	phrog_544	132.3	4.3e-39	major head protein	head and packaging
UniRef90	UHGV-1372296_63	UniRef90_A0A1C6B5R0	594.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1372296_63	1232453.BAIF02000011_gene3359	368.0	0	N/A	N/A
Pfam	UHGV-1372296_63	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-1372296_63	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1372296_65	phrog_17977	80.1	2e-23	N/A	unknown function
UniRef90	UHGV-1372296_65	UniRef90_UPI00141211AB	112.0	1.15e-29	head-tail adaptor protein	N/A
structural_annotation	UHGV-1372296_65	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1372296_66	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-1372296_67	phrog_885	78.2	9e-23	major tail protein	tail
UniRef90	UHGV-1372296_67	UniRef90_A0A843J9F0	215.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1372296_67	1504822.CCNO01000012_gene492	245.0	0	N/A	N/A
structural_annotation	UHGV-1372296_67	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1372296_68	phrog_18646	62.4	8e-18	N/A	unknown function
UniRef90	UHGV-1372296_68	UniRef90_B6CXF0	72.0	0.0000000000000746	Peptidase-colicin	N/A
PHROG	UHGV-1372296_70	phrog_6900	269.0	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1372296_70	1123312.KB904569_gene357	308.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-1372296_70	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1372296_70	MF_04138,COG5281	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1372296_71	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1372296_72	phrog_13879	197.6	0	N/A	unknown function
eggNOG-mapper	UHGV-1372296_72	1122919.KB905559_gene1344	166.0	1.55965e-42	N/A	N/A
structural_annotation	UHGV-1372296_72	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-1372296_73	phrog_18725	94.4	1.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-1372296_73	693746.OBV_18220	122.0	1.88e-33	N/A	N/A
structural_annotation	UHGV-1372296_74	PF20055,MF_03008,NF010730,COG3940	N/A	N/A	N/A	N/A
Pfam	UHGV-1372296_75	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
structural_annotation	UHGV-1372296_75	PF07484	N/A	N/A	N/A	N/A