UHGV-1372445 (vOTU-056990)

Viral Genome: UHGV-1372445

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1372445
vOTU ID	vOTU-056990
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0326772
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9809
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.34
Jumbo phage	No

Genome content
Genome length (bp)	57,327
GC content	47.73%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	103
CDS density	86%
Average CDS length (bps)	480.76
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1372445_1	phrog_158	45.3	0.0000000000015	major tail protein	tail
UniRef90	UHGV-1372445_1	UniRef90_UPI001D087591	116.0	1.24e-30	phage tail protein	N/A
eggNOG-mapper	UHGV-1372445_1	1449343.JQLQ01000002_gene1514	53.1	0.00000108	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-1372445_1	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
Pfam	UHGV-1372445_2	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-1372445_2	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1372445_3	1121333.JMLH01000047_gene1011	80.1	2.47e-17	N/A	N/A
PHROG	UHGV-1372445_4	phrog_1535	135.9	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1372445_4	1121866.AUGK01000003_gene1437	221.0	0	phage tail tape measure protein	N/A
COG	UHGV-1372445_4	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-1372445_5	phrog_1194	83.7	1.8e-24	N/A	unknown function
eggNOG-mapper	UHGV-1372445_5	665956.HMPREF1032_03629	57.8	0.00000000735	N/A	N/A
Pfam	UHGV-1372445_5	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1372445_5	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1372445_6	phrog_13879	229.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1372445_6	1122919.KB905559_gene1344	160.0	7.16e-39	N/A	N/A
Pfam	UHGV-1372445_6	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1372445_6	PF14594,PF19789,PF03256,PF09134,NF033848,COG3500,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-1372445_7	phrog_18725	73.6	2.8e-21	N/A	unknown function
eggNOG-mapper	UHGV-1372445_7	1226322.HMPREF1545_00062	87.4	1.2e-19	N/A	N/A
PHROG	UHGV-1372445_8	phrog_9534	44.0	0.0000000000032	head protein	head and packaging
eggNOG-mapper	UHGV-1372445_8	748224.HMPREF9436_01407	127.0	8.91e-31	COG NOG18825 non supervised orthologous group	N/A
PHROG	UHGV-1372445_10	phrog_28526	96.6	1.2e-28	N/A	unknown function
UniRef90	UHGV-1372445_10	UniRef90_UPI00156FE2AD	74.7	8.29e-17	N/A	N/A
eggNOG-mapper	UHGV-1372445_10	748224.HMPREF9436_00155	93.2	6.51e-25	N/A	N/A
Pfam	UHGV-1372445_10	PF04255	N/A	N/A	N/A	DUF433
KOfam	UHGV-1372445_11	K07273	175.3	0	acm; lysozyme	N/A
PHROG	UHGV-1372445_11	phrog_291	139.8	2.20004e-41	endolysin	lysis
UniRef90	UHGV-1372445_11	UniRef90_E2ZES5	368.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-1372445_11	748224.HMPREF9436_00154	368.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1372445_11	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1372445_11	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1372445_11	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1372445_12	phrog_1863	77.8	7.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-1372445_12	718252.FP2_04900	130.0	1.61e-38	N/A	N/A
PHROG	UHGV-1372445_13	phrog_15303	116.4	1.3e-34	N/A	unknown function
Pfam	UHGV-1372445_13	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
KOfam	UHGV-1372445_15	K24213	40.7	0.000000000016	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-1372445_15	phrog_5240	153.1	1.4013e-45	tail fiber protein	tail
UniRef90	UHGV-1372445_15	UniRef90_UPI00078294F8	100.0	3.15e-18	SGNH/GDSL hydrolase family protein	N/A
eggNOG-mapper	UHGV-1372445_15	411483.FAEPRAA2165_00757	166.0	8.96831e-43	N/A	N/A
Pfam	UHGV-1372445_15	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-1372445_15	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
PHROG	UHGV-1372445_17	phrog_5765	66.9	1.9e-19	N/A	unknown function
UniRef90	UHGV-1372445_17	UniRef90_UPI001D0EF465	69.3	0.0000000000000133	BC1881 family protein	N/A
eggNOG-mapper	UHGV-1372445_17	1095750.HMPREF9970_1008	58.5	0.0000000000296	N/A	N/A
NCBIFam	UHGV-1372445_17	NF033495.1	N/A	N/A	BC1881 family protein	N/A
PHROG	UHGV-1372445_20	phrog_16490	100.6	2.2e-38	N/A	unknown function
eggNOG-mapper	UHGV-1372445_20	1408437.JNJN01000043_gene803	150.0	2.26001e-41	N/A	N/A
eggNOG-mapper	UHGV-1372445_21	1408437.JNJN01000043_gene802	124.0	3.9e-35	N/A	N/A
eggNOG-mapper	UHGV-1372445_22	1408437.JNJN01000043_gene801	86.3	3.99e-18	N/A	N/A
PHROG	UHGV-1372445_23	phrog_7070	116.1	8.2e-35	N/A	unknown function
eggNOG-mapper	UHGV-1372445_23	1195072.M4HPW0_9CAUD	90.9	3.94e-22	N/A	N/A
structural_annotation	UHGV-1372445_25	PF07878	N/A	N/A	N/A	N/A
PHROG	UHGV-1372445_26	phrog_924	40.1	0.000000000067	N/A	unknown function
Pfam	UHGV-1372445_26	PF04448	N/A	N/A	N/A	DUF551
COG	UHGV-1372445_26	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1372445_26	NF041588	N/A	N/A	N/A	N/A
KOfam	UHGV-1372445_27	K03496	236.0	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1372445_27	phrog_164	159.4	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1372445_27	UniRef90_A0A1C6BS15	214.0	0	Sporulation initiation inhibitor protein soj	N/A
eggNOG-mapper	UHGV-1372445_27	1408423.JHYA01000021_gene392	192.0	0	Cellulose biosynthesis protein BcsQ	N/A
Pfam	UHGV-1372445_27	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1372445_27	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1372445_27	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-1372445_29	phrog_4402	102.0	5.4e-30	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1372445_29	UniRef90_A0A0H5Q331	296.0	0	Rep_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1372445_29	999413.HMPREF1094_04438	123.0	2.62e-29	Initiator Replication protein	N/A
Pfam	UHGV-1372445_29	PF01051	N/A	N/A	Initiator Replication protein, WH1	Rep3_N
Pfam	UHGV-1372445_29	PF21205	N/A	N/A	Initiator Rep protein, WH2	Rep3_C
COG	UHGV-1372445_29	COG5527	N/A	N/A	Protein involved in initiation of plasmid replication	N/A
structural_annotation	UHGV-1372445_29	PF01051,PF21205,NF038290,COG5527	N/A	N/A	N/A	N/A
UniRef90	UHGV-1372445_30	UniRef90_A0A2A7B6N3	189.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1372445_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1372445_30	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1372445_30	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1372445_34	phrog_8	41.5	0.000000000027	transcriptional regulator	transcription regulation
UniRef90	UHGV-1372445_34	UniRef90_UPI001D05D211	70.5	0.000000000000212	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1372445_34	693746.OBV_43290	63.9	0.0000000000231	addiction module antidote protein HigA	N/A
COG	UHGV-1372445_34	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-1372445_34	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1372445_35	UniRef90_UPI001956DCC9	72.0	0.00000000000000253	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-1372445_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1372445_35	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1372445_36	PF10922	N/A	N/A	N/A	N/A
Pfam	UHGV-1372445_39	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1372445_39	PF13443,TIGR02684,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1372445_40	PF14143	N/A	N/A	N/A	N/A
PHROG	UHGV-1372445_42	phrog_2872	238.6	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1372445_42	UniRef90_A0A8J6JIF1	270.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1372445_42	754027.HMPREF9554_00709	212.0	0	N/A	N/A
Pfam	UHGV-1372445_42	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1372445_42	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1372445_43	phrog_18107	69.0	8.8e-20	N/A	unknown function
UniRef90	UHGV-1372445_43	UniRef90_UPI00058F46CC	92.4	4.2e-20	N/A	N/A
eggNOG-mapper	UHGV-1372445_43	903814.ELI_1274	154.0	4.2039e-45	N/A	N/A
structural_annotation	UHGV-1372445_43	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1372445_44	phrog_59	114.9	3.1e-34	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1372445_44	UniRef90_UPI0007D9B0A3	147.0	1.27e-41	NUMOD4 motif-containing HNH endonuclease	N/A
eggNOG-mapper	UHGV-1372445_44	945021.TEH_18310	140.0	6.96e-40	NUMOD4 motif	N/A
PADLOC	UHGV-1372445_44	HEase_00016	76.4	2.2e-24	homing endonuclease	RM
Pfam	UHGV-1372445_44	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-1372445_44	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1372445_44	PF13392,PF20987	N/A	N/A	N/A	N/A
PHROG	UHGV-1372445_45	phrog_59	131.4	3.6e-39	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1372445_45	UniRef90_UPI0018DE920E	112.0	2.19e-27	NUMOD4 motif-containing HNH endonuclease	N/A
eggNOG-mapper	UHGV-1372445_45	1434319.W5RV07_9CAUD	105.0	1.16e-25	HNH endonuclease	N/A
PADLOC	UHGV-1372445_45	HEase_00016	56.6	3.7e-16	homing endonuclease	RM
Pfam	UHGV-1372445_45	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-1372445_45	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1372445_45	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1372445_47	phrog_843	64.1	1.6e-18	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1372445_47	UniRef90_UPI001159D907	117.0	5.75e-30	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-1372445_47	929506.CbC4_1203	107.0	6.89e-27	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
structural_annotation	UHGV-1372445_47	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1372445_49	PF11998,COG5420	N/A	N/A	N/A	N/A
KOfam	UHGV-1372445_54	K00390	112.1	3.8e-33	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1372445_54	phrog_424	125.1	4.5e-37	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1372445_54	UniRef90_A0A1Y4LU27	372.0	0	Adenylyl-sulfate reductase	N/A
eggNOG-mapper	UHGV-1372445_54	1408437.JNJN01000032_gene2312	337.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1372445_54	BrxP_00001	83.8	2.8e-25	BrxP	BREX
Pfam	UHGV-1372445_54	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1372445_54	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1372445_54	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1372445_56	MF_00085,TIGR00037,COG0231	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1372445_59	PF16677	N/A	N/A	N/A	N/A
Pfam	UHGV-1372445_60	PF18912	N/A	N/A	Double zinc ribbon domain	DZR_2
UniRef90	UHGV-1372445_61	UniRef90_UPI0012DD33A2	280.0	0	restriction endonuclease subunit M	N/A
eggNOG-mapper	UHGV-1372445_61	596329.HMPREF0631_0252	200.0	0	restriction endonuclease	N/A
PADLOC	UHGV-1372445_61	MTase_II_00176	84.4	0	Type II methyltransferase	RM
COG	UHGV-1372445_61	COG1002	N/A	N/A	Type II restriction/modification system, endonuclease and methylase domains	N/A
structural_annotation	UHGV-1372445_69	NF041588	N/A	N/A	N/A	N/A
UniRef90	UHGV-1372445_74	UniRef90_UPI001AD832E5	102.0	4.9e-27	Lar family restriction alleviation protein	N/A
Pfam	UHGV-1372445_74	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-1372445_74	PF14354	N/A	N/A	N/A	N/A
PHROG	UHGV-1372445_75	phrog_15768	93.3	9.4e-28	N/A	unknown function
UniRef90	UHGV-1372445_75	UniRef90_A0A6N7WKT0	94.0	6.57e-20	N/A	N/A
eggNOG-mapper	UHGV-1372445_75	748224.HMPREF9436_03357	79.3	0.0000000000000047	N/A	N/A
Pfam	UHGV-1372445_75	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1372445_75	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1372445_76	K02314	208.5	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1372445_76	phrog_19	217.7	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1372445_76	UniRef90_UPI001CBC4B63	426.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1372445_76	1203606.HMPREF1526_01325	157.0	8.08003e-41	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1372445_76	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1372445_76	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1372445_76	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1372445_79	PF17340	N/A	N/A	N/A	N/A
PHROG	UHGV-1372445_82	phrog_434	40.4	0.000000000043	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1372445_82	1378168.N510_00538	50.4	0.000000558	N/A	N/A
NCBIFam	UHGV-1372445_87	NF038353.1	N/A	N/A	FxLYD domain-containing protein	N/A
COG	UHGV-1372445_87	COG0515	N/A	N/A	Serine/threonine protein kinase	N/A
structural_annotation	UHGV-1372445_87	PF09624,PF14263,MF_00791,NF038353,TIGR02588,COG4885	N/A	N/A	N/A	N/A
KOfam	UHGV-1372445_88	K21528	146.0	1.59748e-43	gin; serine recombinase [EC:3.1.22.- 6.5.1.-]	N/A
PHROG	UHGV-1372445_88	phrog_125	196.2	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1372445_88	UniRef90_A0A1H3G7A1	239.0	0	Site-specific DNA recombinase	N/A
eggNOG-mapper	UHGV-1372445_88	931626.Awo_c01430	232.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1372445_88	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-1372445_88	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1372445_88	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
Pfam	UHGV-1372445_91	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-1372445_93	phrog_10678	97.4	2.1e-28	N/A	unknown function
PHROG	UHGV-1372445_94	phrog_38	175.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-1372445_94	UniRef90_UPI000419A6BC	435.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1372445_94	1121866.AUGK01000003_gene1428	435.0	0	chromosome segregation	N/A
COG	UHGV-1372445_94	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1372445_94	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-1372445_96	phrog_64	149.2	1.96182e-44	portal protein	head and packaging
UniRef90	UHGV-1372445_96	UniRef90_A0A371ILT4	336.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1372445_96	1121866.AUGK01000003_gene1429	279.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1372445_96	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1372445_96	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1372445_99	phrog_29	201.4	0	major head protein	head and packaging
UniRef90	UHGV-1372445_99	UniRef90_A0A2Z4QBB4	367.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-1372445_99	1347368.HG964404_gene4993	257.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1372445_99	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1372445_99	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1372445_100	UniRef90_A0A7C7ERG0	79.0	1.26e-16	DNA-packaging protein	N/A
structural_annotation	UHGV-1372445_100	PF05135	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1372445_101	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1372445_103	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A