UHGV-1372837 (vOTU-057073)

Viral Genome: UHGV-1372837

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1372837
vOTU ID	vOTU-057073
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0256354
Associated BioSample	SAMEA3879518
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9732
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	70.18
Jumbo phage	No

Genome content
Genome length (bp)	37,773
GC content	49.16%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	57
CDS density	91%
Average CDS length (bps)	604.95
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1372837_2	phrog_15956	56.0	5.3e-17	tail assembly protein	tail
UniRef90	UHGV-1372837_2	UniRef90_A0A1C6GMR6	205.0	0	NlpC/P60 family	N/A
eggNOG-mapper	UHGV-1372837_2	742740.HMPREF9474_01683	138.0	9.79e-35	Glycosyl hydrolases family 25	N/A
COG	UHGV-1372837_2	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1372837_2	PF11910,MF_01354,NF033742	N/A	N/A	N/A	N/A
PHROG	UHGV-1372837_3	phrog_608	61.2	1.7e-17	holin	lysis
UniRef90	UHGV-1372837_3	UniRef90_R6I9L8	115.0	7.11e-31	Putative phage holin	N/A
Pfam	UHGV-1372837_3	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-1372837_3	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-1372837_4	phrog_1863	60.6	1.6e-17	N/A	unknown function
eggNOG-mapper	UHGV-1372837_4	1235797.C816_02840	90.5	2.35e-22	N/A	N/A
structural_annotation	UHGV-1372837_7	PF02973	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1372837_8	PF10651,NF009453	N/A	N/A	N/A	N/A
PHROG	UHGV-1372837_10	phrog_6616	525.3	0	tail protein	tail
UniRef90	UHGV-1372837_10	UniRef90_A0A0J1FXD9	142.0	1.76e-31	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1372837_10	1294142.CINTURNW_1042	71.6	0.000000000806	Phage minor structural protein	N/A
COG	UHGV-1372837_10	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1372837_10	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1372837_11	phrog_1194	94.1	1.1e-27	N/A	unknown function
UniRef90	UHGV-1372837_11	UniRef90_A0A0R1Q5P9	53.1	0.00000218	N/A	N/A
eggNOG-mapper	UHGV-1372837_11	1400520.LFAB_05290	58.2	0.0000000044	N/A	N/A
Pfam	UHGV-1372837_11	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1372837_11	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1372837_12	phrog_23726	67.5	7.3e-38	N/A	unknown function
eggNOG-mapper	UHGV-1372837_12	428125.CLOLEP_01549	137.0	6.78e-36	cell wall binding repeat	N/A
COG	UHGV-1372837_12	COG2247	N/A	N/A	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	N/A
PHROG	UHGV-1372837_13	phrog_1535	88.6	5.8e-26	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1372837_13	645991.Sgly_0352	196.0	0	SLT domain	N/A
COG	UHGV-1372837_13	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
UniRef90	UHGV-1372837_14	UniRef90_UPI0012BCDD8A	60.5	0.00000000257	N/A	N/A
eggNOG-mapper	UHGV-1372837_14	1211844.CBLM010000016_gene1484	56.6	0.0000000225	N/A	N/A
structural_annotation	UHGV-1372837_14	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-1372837_15	phrog_158	63.2	5.9e-18	major tail protein	tail
UniRef90	UHGV-1372837_15	UniRef90_R6HYI8	281.0	0	Major tail protein putative	N/A
eggNOG-mapper	UHGV-1372837_15	1209989.TepiRe1_1157	85.5	2.33e-19	Phage tail tube protein, TTP	N/A
Pfam	UHGV-1372837_15	PF16461	N/A	N/A	Lambda phage tail tube protein, TTP	Phage_TTP_12
structural_annotation	UHGV-1372837_15	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1372837_16	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1372837_17	phrog_5	101.0	1.3e-29	tail completion or Neck1 protein	connector
UniRef90	UHGV-1372837_17	UniRef90_R6IVT6	326.0	0	Bacteriophage protein PF04883 family	N/A
eggNOG-mapper	UHGV-1372837_17	1280692.AUJL01000025_gene2076	139.0	3.84001e-40	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1372837_17	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1372837_17	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1372837_17	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1372837_18	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1372837_19	phrog_132	48.6	0.00000000000013	head-tail adaptor	connector
UniRef90	UHGV-1372837_19	UniRef90_R6I6I7	221.0	0	N/A	N/A
eggNOG-mapper	UHGV-1372837_19	268407.PWYN_03015	49.3	0.0000065	N/A	N/A
PHROG	UHGV-1372837_20	phrog_283	289.8	0	major head protein	head and packaging
UniRef90	UHGV-1372837_20	UniRef90_UPI001896DBE2	408.0	0	P22 coat protein	N/A
eggNOG-mapper	UHGV-1372837_20	1297617.JPJD01000059_gene2633	392.0	0	P22 coat protein - gene protein 5	N/A
Pfam	UHGV-1372837_20	PF11651	N/A	N/A	P22 coat protein - gene protein 5	P22_CoatProtein
structural_annotation	UHGV-1372837_20	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1372837_21	phrog_194	153.3	1.4013e-45	head scaffolding protein	head and packaging
UniRef90	UHGV-1372837_21	UniRef90_UPI001651708C	123.0	3.62e-32	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1372837_21	1196028.ALEF01000043_gene465	104.0	1.66e-25	Phage minor structural protein GP20	N/A
Pfam	UHGV-1372837_21	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1372837_21	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1372837_23	phrog_115	340.3	0	minor head protein	head and packaging
UniRef90	UHGV-1372837_23	UniRef90_A0A3D2QEP6	682.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1372837_23	1209989.TepiRe1_1146	266.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-1372837_23	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
Pfam	UHGV-1372837_23	PF14424	N/A	N/A	The BURPS668_1122 family of deaminases	Toxin-deaminase
NCBIFam	UHGV-1372837_23	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1372837_23	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1372837_23	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1372837_24	phrog_64	307.1	0	portal protein	head and packaging
UniRef90	UHGV-1372837_24	UniRef90_R6IBR5	1004.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1372837_24	97138.C820_00238	383.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1372837_24	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1372837_24	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1372837_25	K06909	389.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1372837_25	phrog_3717	173.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1372837_25	UniRef90_R6I0M1	837.0	0	Phage terminase large subunit PBSX family	N/A
eggNOG-mapper	UHGV-1372837_25	203119.Cthe_2474	522.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1372837_25	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1372837_25	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1372837_25	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1372837_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1372837_25	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1372837_26	phrog_17390	44.2	0.0000000000015	N/A	unknown function
UniRef90	UHGV-1372837_26	UniRef90_UPI001E61FF52	79.7	2.19e-16	terminase small subunit	N/A
eggNOG-mapper	UHGV-1372837_26	1158614.I592_02434	67.4	0.0000000000022	Terminase small subunit	N/A
Pfam	UHGV-1372837_26	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
structural_annotation	UHGV-1372837_26	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-1372837_27	phrog_16945	45.7	0.00000000000096	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1372837_27	UniRef90_A0A7C6U4T3	111.0	1.44e-28	PLD phosphodiesterase domain-containing protein	N/A
eggNOG-mapper	UHGV-1372837_27	1392490.JHZX01000001_gene2429	57.0	0.0000000313	N/A	N/A
PHROG	UHGV-1372837_28	phrog_12389	75.1	8.5e-22	N/A	unknown function
eggNOG-mapper	UHGV-1372837_28	1196322.A370_03932	63.5	0.000000000329	N/A	N/A
KOfam	UHGV-1372837_29	K00571	157.1	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1372837_29	phrog_12862	163.3	0	N/A	unknown function
UniRef90	UHGV-1372837_29	UniRef90_UPI000A26DFF4	325.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1372837_29	1120998.AUFC01000030_gene2227	312.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-1372837_29	MTase_II_00037	142.2	0	Type II methyltransferase	RM
Pfam	UHGV-1372837_29	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1372837_29	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1372837_29	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1372837_30	phrog_11237	79.0	6.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-1372837_30	537013.CLOSTMETH_01096	59.7	0.00000000106	N/A	N/A
structural_annotation	UHGV-1372837_30	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1372837_31	phrog_8684	86.5	3.2e-26	N/A	unknown function
UniRef90	UHGV-1372837_31	UniRef90_A0A1C6E8F9	95.9	5.73e-23	YopX protein	N/A
eggNOG-mapper	UHGV-1372837_31	742767.HMPREF9456_02048	84.7	3.13e-19	YopX protein	N/A
Pfam	UHGV-1372837_31	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1372837_31	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1372837_31	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-1372837_33	phrog_3584	128.5	4.5e-38	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1372837_33	537013.CLOSTMETH_02141	78.2	0.00000000000000618	N/A	N/A
structural_annotation	UHGV-1372837_33	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-1372837_34	phrog_24518	45.4	0.0000000000011	N/A	unknown function
eggNOG-mapper	UHGV-1372837_34	693746.OBV_25370	85.5	3.31e-18	N/A	N/A
KOfam	UHGV-1372837_36	K18831	43.5	0.0000000000068	higA; HTH-type transcriptional regulator / antitoxin HigA	N/A
PHROG	UHGV-1372837_36	phrog_8	51.2	0.000000000000031	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-1372837_36	537013.CLOSTMETH_02010	73.2	0.000000000000638	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1372837_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1372837_36	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1372837_37	phrog_15609	141.5	5.89947e-42	N/A	unknown function
eggNOG-mapper	UHGV-1372837_37	641112.ACOK01000073_gene2872	70.5	0.00000000004	N/A	N/A
Pfam	UHGV-1372837_37	PF11300	N/A	N/A	N/A	DUF3102
structural_annotation	UHGV-1372837_37	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-1372837_38	phrog_8470	308.7	0	N/A	unknown function
UniRef90	UHGV-1372837_38	UniRef90_A0A238ZSA1	220.0	0	PcfJ-like protein	N/A
eggNOG-mapper	UHGV-1372837_38	1117108.PAALTS15_13637	195.0	0	PcfJ-like protein	N/A
Pfam	UHGV-1372837_38	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1372837_38	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1372837_39	phrog_7445	61.8	1.2e-17	N/A	unknown function
UniRef90	UHGV-1372837_39	UniRef90_UPI001B3C69A2	73.6	0.0000000000000126	Cas9 inhibitor AcrIIA9 family protein	N/A
Pfam	UHGV-1372837_39	PF14058	N/A	N/A	PcfK-like protein	PcfK
structural_annotation	UHGV-1372837_39	PF14058	N/A	N/A	N/A	N/A
PHROG	UHGV-1372837_40	phrog_824	132.5	1.4e-39	N/A	unknown function
UniRef90	UHGV-1372837_40	UniRef90_A0A3D5TLJ2	353.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1372837_40	642492.Clole_0728	137.0	2.12e-39	VRR-NUC domain	N/A
Pfam	UHGV-1372837_40	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1372837_40	PF08774,COG1996	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1372837_44	PF07073,COG4568	N/A	N/A	N/A	N/A
UniRef90	UHGV-1372837_45	UniRef90_A0A2V2EEG3	76.6	0.00000000000000429	N/A	N/A
eggNOG-mapper	UHGV-1372837_45	665950.HMPREF1025_02540	61.6	0.00000000108	N/A	N/A
Pfam	UHGV-1372837_45	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1372837_45	PF04448	N/A	N/A	N/A	N/A
KOfam	UHGV-1372837_47	K01449	56.7	2.2e-16	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1372837_47	phrog_18750	151.9	4.2039e-45	N/A	unknown function
UniRef90	UHGV-1372837_47	UniRef90_A0A3D5TM41	246.0	0	Hydrolase_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1372837_47	1203606.HMPREF1526_01876	142.0	4.73e-40	Cell wall hydrolase	N/A
Pfam	UHGV-1372837_47	PF07486	N/A	N/A	Cell Wall Hydrolase	Hydrolase_2
COG	UHGV-1372837_47	COG3773	N/A	N/A	Cell wall hydrolase CwlJ, involved in spore germination	N/A
structural_annotation	UHGV-1372837_47	PF07486,TIGR02869,COG3773	N/A	N/A	N/A	N/A
PHROG	UHGV-1372837_51	phrog_2232	174.0	0	N/A	unknown function
UniRef90	UHGV-1372837_51	UniRef90_UPI001CCCDE3F	169.0	0	N/A	N/A
eggNOG-mapper	UHGV-1372837_51	357809.Cphy_2977	146.0	8.44001e-40	N/A	N/A
Pfam	UHGV-1372837_51	PF14337	N/A	N/A	Abortive infection alpha	Abi_alpha
PHROG	UHGV-1372837_53	phrog_6058	45.0	0.0000000000012	N/A	unknown function
eggNOG-mapper	UHGV-1372837_53	742738.HMPREF9460_00848	48.9	0.00000592	N/A	N/A
UniRef90	UHGV-1372837_54	UniRef90_A0A348Z948	68.9	0.0000000000000932	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1372837_54	1262914.BN533_00808	65.9	0.000000000000257	N/A	N/A
Pfam	UHGV-1372837_54	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-1372837_54	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
KOfam	UHGV-1372837_55	K01356	113.1	4.3e-33	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1372837_55	phrog_4	130.9	1.2e-38	transcriptional repressor	transcription regulation
UniRef90	UHGV-1372837_55	UniRef90_R5Y1G1	257.0	0	Putative phage repressor	N/A
eggNOG-mapper	UHGV-1372837_55	1262914.BN533_00809	119.0	8.02e-31	Peptidase S24-like	N/A
Pfam	UHGV-1372837_55	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1372837_55	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1372837_55	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1372837_55	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
KOfam	UHGV-1372837_56	K14623	395.1	0	dinD; DNA-damage-inducible protein D	N/A
PHROG	UHGV-1372837_56	phrog_8036	377.4	0	N/A	unknown function
UniRef90	UHGV-1372837_56	UniRef90_A0A1Y4LUW1	417.0	0	DNA damage-inducible protein D	N/A
eggNOG-mapper	UHGV-1372837_56	1131462.DCF50_p2453	399.0	0	N/A	N/A
AcrCatalog	UHGV-1372837_56	cluster_17589	159.0	0	NA	N/A
PADLOC	UHGV-1372837_56	Specificity_I_00032	376.0	0	Type I specificity subunit	RM
Pfam	UHGV-1372837_56	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
NCBIFam	UHGV-1372837_56	NF008573.0	N/A	N/A	DNA damage-inducible protein D	N/A
COG	UHGV-1372837_56	COG3645	N/A	N/A	Phage antirepressor protein YoqD, KilAC domain	N/A
structural_annotation	UHGV-1372837_56	PF09669,NF008573,COG3646	N/A	N/A	N/A	N/A
KOfam	UHGV-1372837_57	K14059	160.2	0	int; integrase	N/A
PHROG	UHGV-1372837_57	phrog_1	190.9	0	integrase	integration and excision
UniRef90	UHGV-1372837_57	UniRef90_A0A7K4BXA9	291.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1372837_57	693746.OBV_19730	272.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1372837_57	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1372837_57	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1372837_57	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A