UHGV-1373277 (vOTU-057174)

Viral Genome: UHGV-1373277

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1373277
vOTU ID	vOTU-057174
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0258007
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9805
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	-5.51
Jumbo phage	No

Genome content
Genome length (bp)	37,985
GC content	52.06%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	90%
Average CDS length (bps)	656.31
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1373277_2	K14059	96.8	3.3e-28	int; integrase	N/A
PHROG	UHGV-1373277_2	phrog_1	92.9	4.2e-27	integrase	integration and excision
UniRef90	UHGV-1373277_2	UniRef90_A0A6N7WI32	227.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1373277_2	411468.CLOSCI_00325	204.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1373277_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1373277_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1373277_2	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1373277_3	UniRef90_A0A7M1RRU0	67.8	0.0000000000654	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1373277_3	1408437.JNJN01000043_gene801	70.1	0.00000000000135	N/A	N/A
structural_annotation	UHGV-1373277_6	PF17917	N/A	N/A	N/A	N/A
PHROG	UHGV-1373277_8	phrog_15863	43.0	7.5e-20	N/A	unknown function
UniRef90	UHGV-1373277_8	UniRef90_UPI00068FC51E	332.0	0	J domain-containing protein	N/A
eggNOG-mapper	UHGV-1373277_8	1519439.JPJG01000053_gene1369	332.0	0	DnaJ molecular chaperone homology domain	N/A
Pfam	UHGV-1373277_8	PF18847	N/A	N/A	Large polyvalent protein associated domain 29	LPD29
COG	UHGV-1373277_8	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
KOfam	UHGV-1373277_10	K06909	122.8	3.5e-36	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1373277_10	phrog_979	142.8	1.4013e-43	terminase large subunit	head and packaging
UniRef90	UHGV-1373277_10	UniRef90_A0A1M5YHQ5	490.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1373277_10	693746.OBV_01690	455.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-1373277_10	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1373277_10	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1373277_10	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1373277_12	phrog_156	89.8	1.1e-27	portal protein	head and packaging
eggNOG-mapper	UHGV-1373277_12	693746.OBV_01670	536.0	0	N/A	N/A
structural_annotation	UHGV-1373277_12	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1373277_14	phrog_422	116.7	2e-34	major head protein	head and packaging
UniRef90	UHGV-1373277_14	UniRef90_A0A8J6JH37	295.0	0	Chitobiase/beta-hexosaminidase C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1373277_14	693746.OBV_01700	214.0	0	N/A	N/A
Pfam	UHGV-1373277_14	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-1373277_14	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1373277_15	phrog_1863	66.9	1.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-1373277_15	748224.HMPREF9436_01412	99.8	9.48e-27	N/A	N/A
PHROG	UHGV-1373277_16	phrog_1129	67.8	1.2e-19	holin	lysis
UniRef90	UHGV-1373277_16	UniRef90_A0A0D8J2M2	117.0	1.34e-32	Enolase	N/A
eggNOG-mapper	UHGV-1373277_16	665956.HMPREF1032_03272	115.0	1.26e-32	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1373277_16	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1373277_16	PF06946	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1373277_17	1519439.JPJG01000011_gene57	124.0	1.8e-34	N/A	N/A
structural_annotation	UHGV-1373277_17	PF11650	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1373277_18	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-1373277_19	phrog_5107	40.0	0.000000000031	amidase	lysis
UniRef90	UHGV-1373277_19	UniRef90_A0A4D7ASB8	506.0	0	N/A	N/A
eggNOG-mapper	UHGV-1373277_19	1519439.JPJG01000011_gene54	519.0	0	N/A	N/A
structural_annotation	UHGV-1373277_19	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
PHROG	UHGV-1373277_20	phrog_892	59.3	1.2e-28	tail fiber protein	tail
eggNOG-mapper	UHGV-1373277_20	1408422.JHYF01000026_gene3527	86.3	8.17e-18	nuclear chromosome segregation	N/A
COG	UHGV-1373277_20	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-1373277_21	PF21253,PF07210,NF038128,TIGR03000,COG2512	N/A	N/A	N/A	N/A
PHROG	UHGV-1373277_23	phrog_20388	88.4	8.1e-26	endolysin	lysis
UniRef90	UHGV-1373277_23	UniRef90_UPI00189D4A1D	101.0	2.18e-22	phage tail tip lysozyme	N/A
eggNOG-mapper	UHGV-1373277_23	1203606.HMPREF1526_00253	104.0	8.24e-23	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1373277_23	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-1373277_23	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1373277_23	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1373277_23	PF18013,PF01471,COG3409	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1373277_24	693746.OBV_01600	59.7	0.000000516	N/A	N/A
UniRef90	UHGV-1373277_25	UniRef90_A0A810QFN4	469.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1373277_25	693746.OBV_01590	344.0	0	N/A	N/A
Pfam	UHGV-1373277_26	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
eggNOG-mapper	UHGV-1373277_28	1121405.dsmv_2591	58.9	0.0000000112	N/A	N/A
KOfam	UHGV-1373277_29	K01520	165.4	0	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-1373277_29	phrog_135	132.8	1.7e-39	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1373277_29	UniRef90_UPI001873736C	196.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-1373277_29	1282887.AUJG01000016_gene1113	154.0	1.4013e-45	N/A	N/A
Pfam	UHGV-1373277_29	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-1373277_29	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-1373277_29	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-1373277_29	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
KOfam	UHGV-1373277_30	K03091	89.2	6.6e-26	sigH; RNA polymerase sporulation-specific sigma factor	N/A
UniRef90	UHGV-1373277_30	UniRef90_A0A316LD95	60.8	0.0000000205	Sigma70_r2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1373277_30	500633.CLOHIR_01562	52.4	0.0000081	Belongs to the sigma-70 factor family	N/A
Pfam	UHGV-1373277_30	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
Pfam	UHGV-1373277_30	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
NCBIFam	UHGV-1373277_30	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-1373277_30	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-1373277_30	PF00196,MF_00959,NF006158,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-1373277_31	phrog_3136	129.8	9.6e-39	N/A	unknown function
UniRef90	UHGV-1373277_31	UniRef90_UPI001A9A8D4F	129.0	1.31e-34	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1373277_31	97139.C824_00742	69.3	0.00000000000171	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1373277_31	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1373277_31	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
UniRef90	UHGV-1373277_32	UniRef90_UPI00145A074D	86.7	5.87e-18	N/A	N/A
PHROG	UHGV-1373277_35	phrog_111	160.9	0	DNA methyltransferase	other
UniRef90	UHGV-1373277_35	UniRef90_A0A1Y4EVK6	212.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-1373277_35	760568.Desku_0784	186.0	0	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-1373277_35	oMTase_00015	178.2	0	orphan methyltransferase	RM
Pfam	UHGV-1373277_35	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
KOfam	UHGV-1373277_36	K05129	40.6	0.000000000016	MUSK; muscle, skeletal, receptor tyrosine kinase [EC:2.7.10.1]	N/A
PHROG	UHGV-1373277_36	phrog_15773	43.2	0.0000000000014	N/A	unknown function
dbAPIS	UHGV-1373277_36	APIS008	N/A	N/A	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	N/A
PHROG	UHGV-1373277_37	phrog_1770	102.8	3.3e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1373277_37	UniRef90_A0A1L8CM45	100.0	2.89e-24	Crossover junction endodeoxyribonuclease RuvC	N/A
eggNOG-mapper	UHGV-1373277_37	994601.G9BW80_9CAUD	98.6	3.3e-24	nucleic acid binding	N/A
structural_annotation	UHGV-1373277_37	PF16921,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-1373277_38	phrog_2562	125.1	7.3e-37	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1373277_38	UniRef90_UPI00189A2195	193.0	0	N/A	N/A
eggNOG-mapper	UHGV-1373277_38	1235790.C805_00030	179.0	0	N/A	N/A
Pfam	UHGV-1373277_38	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-1373277_38	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1373277_39	PF08962	N/A	N/A	N/A	N/A
PHROG	UHGV-1373277_41	phrog_561	127.4	3.8e-38	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1373277_41	UniRef90_A0A174RC35	228.0	0	RecT family	N/A
eggNOG-mapper	UHGV-1373277_41	648757.Rvan_1470	156.0	4.90454e-44	N/A	N/A
Pfam	UHGV-1373277_41	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-1373277_41	PF03837,TIGR01913	N/A	N/A	N/A	N/A
PHROG	UHGV-1373277_44	phrog_298	82.0	2.1e-24	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1373277_44	UniRef90_A0A1C5T0L2	89.4	1.89e-18	PD-(D/E)XK nuclease superfamily	N/A
eggNOG-mapper	UHGV-1373277_44	1218075.BAYA01000003_gene606	78.2	0.00000000000000461	N/A	N/A
structural_annotation	UHGV-1373277_44	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
Pfam	UHGV-1373277_49	PF00325	N/A	N/A	Bacterial regulatory proteins, crp family	Crp
structural_annotation	UHGV-1373277_49	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1373277_51	K07448	61.8	1.1e-17	mrr; restriction system protein	N/A
UniRef90	UHGV-1373277_51	UniRef90_A0A6N9QIX7	283.0	0	Restriction endonuclease	N/A
eggNOG-mapper	UHGV-1373277_51	1249480.B649_06030	62.4	0.0000000436	Restriction endonuclease	N/A
Pfam	UHGV-1373277_51	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-1373277_51	COG1787	N/A	N/A	Endonuclease, HJR/Mrr/RecB family	N/A
UniRef90	UHGV-1373277_52	UniRef90_A0A3C1K3F5	67.8	0.00000000000286	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1373277_52	1329250.WOSG25_041380	50.4	0.00000264	Transcriptional regulator	N/A
COG	UHGV-1373277_52	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1373277_52	NF007257,COG1396	N/A	N/A	N/A	N/A