UHGV-1373817 (vOTU-057279)

Viral Genome: UHGV-1373817

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1373817
vOTU ID	vOTU-057279
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0249772
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.982
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.24
Jumbo phage	No

Genome content
Genome length (bp)	36,585
GC content	40.32%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	60
CDS density	91%
Average CDS length (bps)	554.80
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1373817_3	phrog_5	63.4	6.3e-18	tail completion or Neck1 protein	connector
UniRef90	UHGV-1373817_3	UniRef90_A0A6A8M6L6	98.6	5.57e-24	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1373817_3	1504822.CCNO01000013_gene284	100.0	4.49e-26	Bacteriophage HK97-gp10, putative tail-component	N/A
NCBIFam	UHGV-1373817_3	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1373817_3	PF05069,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1373817_4	phrog_194	44.6	0.0000000000023	head scaffolding protein	head and packaging
UniRef90	UHGV-1373817_4	UniRef90_A0A6B9SU02	135.0	2.11e-36	Fibronectin autolysin	N/A
structural_annotation	UHGV-1373817_4	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1373817_5	phrog_544	166.9	0	major head protein	head and packaging
UniRef90	UHGV-1373817_5	UniRef90_A0A810PZM2	291.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1373817_5	1347392.CCEZ01000005_gene1236	224.0	0	N/A	N/A
structural_annotation	UHGV-1373817_5	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1373817_7	phrog_17977	76.1	3.2e-22	N/A	unknown function
Pfam	UHGV-1373817_7	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-1373817_7	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1373817_8	phrog_17405	48.3	0.00000000000016	head protein	head and packaging
structural_annotation	UHGV-1373817_8	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-1373817_9	phrog_885	95.9	3.7e-28	major tail protein	tail
UniRef90	UHGV-1373817_9	UniRef90_A0A843J9F0	310.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1373817_9	1504822.CCNO01000012_gene492	236.0	0	N/A	N/A
Pfam	UHGV-1373817_9	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
PHROG	UHGV-1373817_12	phrog_58	232.7	0	tail length tape measure protein	tail
UniRef90	UHGV-1373817_12	UniRef90_A0A8J8MNB7	159.0	3.02e-38	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1373817_12	333138.LQ50_04250	172.0	3.15993e-42	Phage tail tape measure protein	N/A
COG	UHGV-1373817_12	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
eggNOG-mapper	UHGV-1373817_13	883112.HMPREF9707_01602	67.4	0.000000000000892	N/A	N/A
structural_annotation	UHGV-1373817_13	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1373817_14	phrog_23052	303.8	0	N/A	unknown function
eggNOG-mapper	UHGV-1373817_14	483218.BACPEC_01320	284.0	0	N/A	N/A
structural_annotation	UHGV-1373817_14	PF09931,PF14879,NF033848,TIGR03721,COG3500	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1373817_15	693746.OBV_20200	61.2	0.0000000591	N/A	N/A
PHROG	UHGV-1373817_16	phrog_19291	96.4	1.8e-36	N/A	unknown function
eggNOG-mapper	UHGV-1373817_16	397290.C810_01269	104.0	2.82e-21	N/A	N/A
structural_annotation	UHGV-1373817_16	PF02191,COG3823	N/A	N/A	N/A	N/A
PHROG	UHGV-1373817_20	phrog_443	53.3	0.0000000000000074	holin	lysis
UniRef90	UHGV-1373817_20	UniRef90_UPI000C088FD8	62.8	0.000000000015	holin	N/A
eggNOG-mapper	UHGV-1373817_20	1469948.JPNB01000002_gene3855	62.4	0.00000000000358	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1373817_20	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1373817_20	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-1373817_21	K07273	214.5	0	acm; lysozyme	N/A
PHROG	UHGV-1373817_21	phrog_291	154.5	1.4013e-45	endolysin	lysis
UniRef90	UHGV-1373817_21	UniRef90_A0A828T118	289.0	0	LysM domain-containing protein	N/A
eggNOG-mapper	UHGV-1373817_21	1193128.A200_03694	290.0	0	lysozyme activity	N/A
Pfam	UHGV-1373817_21	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1373817_21	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-1373817_21	COG1388	N/A	N/A	LysM repeat	N/A
UniRef90	UHGV-1373817_22	UniRef90_A0A843IZ65	78.2	1.9e-17	Sigma70_r4 domain-containing protein	N/A
Pfam	UHGV-1373817_22	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-1373817_22	PF04545,MF_00245,NF001074,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1373817_23	1410625.JHWK01000002_gene45	56.2	0.000000017	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-1373817_23	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
eggNOG-mapper	UHGV-1373817_25	658655.HMPREF0988_00918	49.7	0.000000608	N/A	N/A
eggNOG-mapper	UHGV-1373817_26	641112.ACOK01000103_gene525	135.0	1.16e-36	N/A	N/A
structural_annotation	UHGV-1373817_27	PF18573,NF033147	N/A	N/A	N/A	N/A
KOfam	UHGV-1373817_31	K14059	161.5	0	int; integrase	N/A
PHROG	UHGV-1373817_31	phrog_1	155.2	0	integrase	integration and excision
UniRef90	UHGV-1373817_31	UniRef90_UPI0008714E05	421.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1373817_31	397290.C810_05149	298.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1373817_31	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1373817_31	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1373817_31	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1373817_32	1410670.JHXF01000017_gene1915	51.6	0.00000505	N/A	N/A
KOfam	UHGV-1373817_33	K22300	64.7	1.8e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1373817_33	phrog_8	68.3	1.5e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-1373817_33	UniRef90_D6KLD1	84.7	2.04e-18	Toxin-antitoxin system, antitoxin component, Xre family	N/A
eggNOG-mapper	UHGV-1373817_33	526218.Sterm_3926	83.2	9.3e-19	sequence-specific DNA binding	N/A
PADLOC	UHGV-1373817_33	retron_type_VI_hth_cluster2_1	40.0	0.000000000082	N/A	Retron
Pfam	UHGV-1373817_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1373817_33	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-1373817_34	UniRef90_A0A3S5FBF3	77.4	3.88e-17	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1373817_34	1163671.JAGI01000002_gene2855	82.4	6.47e-20	N/A	N/A
structural_annotation	UHGV-1373817_34	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1373817_35	phrog_36464	43.4	0.0000000000078	N/A	unknown function
structural_annotation	UHGV-1373817_35	PF09035	N/A	N/A	N/A	N/A
PHROG	UHGV-1373817_36	phrog_22529	47.3	0.00000000000017	N/A	unknown function
UniRef90	UHGV-1373817_36	UniRef90_UPI000B34AED4	66.2	0.000000000309	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-1373817_36	1392493.JIAB01000001_gene870	119.0	9.78e-32	3D domain	N/A
Pfam	UHGV-1373817_36	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-1373817_36	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
PHROG	UHGV-1373817_40	phrog_674	76.5	3.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-1373817_40	742765.HMPREF9457_02106	79.3	0.00000000000000828	N/A	N/A
Pfam	UHGV-1373817_40	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1373817_40	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1373817_41	phrog_155	138.5	4.30002e-41	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1373817_41	UniRef90_A0A6G5R470	178.0	0	DNA single-strand annealing protein, ERF superfamily	N/A
eggNOG-mapper	UHGV-1373817_41	1329250.WOSG25_420010	166.0	0	ERF superfamily	N/A
Pfam	UHGV-1373817_41	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1373817_41	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1373817_42	phrog_72	50.5	0.000000000000025	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1373817_42	411468.CLOSCI_00314	155.0	0	N/A	N/A
structural_annotation	UHGV-1373817_42	PF05772,NF007281	N/A	N/A	N/A	N/A
KOfam	UHGV-1373817_43	K01160	63.9	4.5e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1373817_43	phrog_34	62.3	8.2e-18	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1373817_43	UniRef90_UPI0018F5FF03	139.0	4.07e-40	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1373817_43	796940.HMPREF9628_00163	99.0	8.23e-25	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1373817_43	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1373817_43	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1373817_43	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1373817_44	phrog_4973	56.9	3.6e-16	N/A	unknown function
UniRef90	UHGV-1373817_44	UniRef90_A0A1W1YSW9	80.5	2.79e-18	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1373817_44	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1373817_44	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
KOfam	UHGV-1373817_45	K03111	134.4	1.3e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1373817_45	phrog_44	129.9	2e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1373817_45	UniRef90_A0A352WH90	196.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1373817_45	1392493.JIAB01000001_gene1686	192.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1373817_45	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1373817_45	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1373817_45	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1373817_45	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1373817_45	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1373817_46	phrog_10469	165.2	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1373817_46	UniRef90_A0A371AZY0	245.0	0	Phage_rep_org_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1373817_46	1291050.JAGE01000002_gene3381	202.0	0	Phage replisome organizer, N-terminal domain protein	N/A
Pfam	UHGV-1373817_46	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-1373817_46	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-1373817_46	PF09681,TIGR01714,COG3388	N/A	N/A	N/A	N/A
PHROG	UHGV-1373817_48	phrog_424	130.8	1.1e-38	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1373817_48	UniRef90_UPI001106D0F2	332.0	0	phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-1373817_48	1410650.JHWL01000037_gene617	354.0	0	sulfate reduction	N/A
PADLOC	UHGV-1373817_48	SspD_00001	57.5	5.2e-16	SspD	SSP
Pfam	UHGV-1373817_48	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1373817_48	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1373817_48	PF01507,MF_00063,NF002537,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-1373817_49	K00558	185.5	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1373817_49	phrog_116	224.3	0	DNA methyltransferase	other
UniRef90	UHGV-1373817_49	UniRef90_E7GTS2	608.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1373817_49	742740.HMPREF9474_04317	608.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1373817_49	MTase_II_00020	96.3	5e-31	Type II methyltransferase	RM
Pfam	UHGV-1373817_49	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1373817_49	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1373817_49	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-1373817_51	K19170	65.2	6.7e-19	dndC; DNA sulfur modification protein DndC	N/A
PHROG	UHGV-1373817_51	phrog_424	61.1	1.7e-17	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1373817_51	UniRef90_U2WDE8	182.0	0	Phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1373817_51	1321782.HMPREF1986_00327	182.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
PADLOC	UHGV-1373817_51	BrxP_00001	41.4	0.000000000015	BrxP	BREX
Pfam	UHGV-1373817_51	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1373817_51	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
UniRef90	UHGV-1373817_52	UniRef90_A0A7U9H121	92.0	4.58e-22	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-1373817_52	1095750.HMPREF9970_1672	109.0	1.02e-27	Phosphoadenosine phosphosulfate reductase	N/A
Pfam	UHGV-1373817_52	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1373817_52	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
PHROG	UHGV-1373817_57	phrog_309	172.7	0	terminase small subunit	head and packaging
UniRef90	UHGV-1373817_57	UniRef90_A0A1M5ZJM4	169.0	0	Transposase	N/A
eggNOG-mapper	UHGV-1373817_57	1007096.BAGW01000022_gene2658	171.0	0	transposase activity	N/A
COG	UHGV-1373817_57	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-1373817_57	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-1373817_58	K06909	113.8	2e-33	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1373817_58	phrog_2	161.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1373817_58	UniRef90_UPI001F36F1AE	477.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1373817_58	1567015.A0A0A7RWT0_9VIRU	463.0	0	Terminase-like family	N/A
Pfam	UHGV-1373817_58	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-1373817_58	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
structural_annotation	UHGV-1373817_58	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1373817_59	phrog_64	136.9	8.60005e-41	portal protein	head and packaging
UniRef90	UHGV-1373817_59	UniRef90_A0A6B9SSE7	482.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1373817_59	673376.F2VHW1_9CAUD	214.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1373817_59	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1373817_59	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1373817_60	phrog_595	108.3	8.9e-32	head maturation protease	head and packaging
UniRef90	UHGV-1373817_60	UniRef90_A0A6B9SXD5	328.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1373817_60	1111135.HMPREF1248_0663	210.0	0	cell adhesion	N/A
Pfam	UHGV-1373817_60	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1373817_60	COG2369	N/A	N/A	N/A	N/A