UHGV-1375183 (vOTU-006655)

Viral Genome: UHGV-1375183

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1375183
vOTU ID	vOTU-006655
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0291361
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9754
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.16
Jumbo phage	No

Genome content
Genome length (bp)	44,536
GC content	56.77%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	65
CDS density	93%
Average CDS length (bps)	635.22
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1375183_1	K14059	139.5	4.69996e-41	int; integrase	N/A
PHROG	UHGV-1375183_1	phrog_1	144.6	8.60397e-43	integrase	integration and excision
UniRef90	UHGV-1375183_1	UniRef90_A0A174DBH0	699.0	0	Site-specific tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-1375183_1	1514668.JOOA01000001_gene242	160.0	2.00386e-43	Phage integrase family	N/A
Pfam	UHGV-1375183_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1375183_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1375183_1	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1375183_2	phrog_33872	62.9	1e-23	N/A	unknown function
eggNOG-mapper	UHGV-1375183_2	445972.ANACOL_01858	52.4	0.000000547	N/A	N/A
COG	UHGV-1375183_3	COG1525	N/A	N/A	Endonuclease YncB, thermonuclease family	N/A
PHROG	UHGV-1375183_4	phrog_87	77.3	1.4e-22	metallo-protease	other
UniRef90	UHGV-1375183_4	UniRef90_A0A174DB16	296.0	0	Metallopeptidase immA	N/A
eggNOG-mapper	UHGV-1375183_4	272558.10176174	120.0	6.2e-33	IrrE N-terminal-like domain	N/A
Pfam	UHGV-1375183_4	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1375183_4	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1375183_4	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-1375183_5	K22299	65.4	1.3e-18	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1375183_5	phrog_8	68.9	1e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-1375183_5	UniRef90_A0A174D5Y8	248.0	0	HTH-type transcriptional regulator immR	N/A
eggNOG-mapper	UHGV-1375183_5	1169144.KB910924_gene359	112.0	4.63e-30	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-1375183_5	retron_type_VI_hth_cluster2_1	54.5	0.0000000000000022	N/A	Retron
Pfam	UHGV-1375183_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1375183_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1375183_5	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1375183_6	K22300	51.4	0.000000000000021	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1375183_6	phrog_8	52.8	0.00000000000001	transcriptional regulator	transcription regulation
UniRef90	UHGV-1375183_6	UniRef90_A0A6A8VIS0	84.3	4.85e-20	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1375183_6	935948.KE386495_gene1211	53.5	0.000000059	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1375183_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1375183_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1375183_6	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1375183_10	PF13560,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1375183_13	K21919	125.3	5.1e-37	KCTD9; BTB/POZ domain-containing protein KCTD9	N/A
PHROG	UHGV-1375183_13	phrog_9562	119.3	7.2e-36	N/A	unknown function
UniRef90	UHGV-1375183_13	UniRef90_A0A6N3FDD3	238.0	0	Pentapeptide repeats (8 copies)	N/A
eggNOG-mapper	UHGV-1375183_13	1232443.BAIA02000078_gene49	161.0	0	Pentapeptide repeat protein	N/A
Pfam	UHGV-1375183_13	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
Pfam	UHGV-1375183_13	PF19062	N/A	N/A	N/A	DUF5758
COG	UHGV-1375183_13	COG1357	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1375183_13	PF19062,PF13599,NF011744,COG1357	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1375183_14	537013.CLOSTMETH_01718	47.4	0.00000163	N/A	N/A
structural_annotation	UHGV-1375183_15	PF09943	N/A	N/A	N/A	N/A
PHROG	UHGV-1375183_17	phrog_862	87.4	2.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-1375183_17	279238.Saro_3022	125.0	1.71e-33	N/A	N/A
structural_annotation	UHGV-1375183_17	PF05037,COG2965	N/A	N/A	N/A	N/A
PHROG	UHGV-1375183_18	phrog_15768	127.6	7e-40	N/A	unknown function
UniRef90	UHGV-1375183_18	UniRef90_UPI00189C2664	369.0	0	N/A	N/A
eggNOG-mapper	UHGV-1375183_18	642492.Clole_0946	88.6	1e-18	DnaD domain protein	N/A
Pfam	UHGV-1375183_18	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1375183_18	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1375183_18	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1375183_19	K02314	367.4	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1375183_19	phrog_19	290.7	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1375183_19	UniRef90_UPI0018973262	800.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1375183_19	742738.HMPREF9460_00852	343.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1375183_19	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1375183_19	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1375183_19	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1375183_19	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-1375183_21	K01160	45.6	0.0000000000018	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1375183_21	phrog_4632	53.4	9.6e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1375183_21	UniRef90_A0A1V5ZUM0	120.0	2.4e-32	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1375183_21	469604.HMPREF0946_00819	60.8	0.000000000325	N/A	N/A
structural_annotation	UHGV-1375183_21	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1375183_22	PF12759	N/A	N/A	N/A	N/A
KOfam	UHGV-1375183_23	K00558	159.6	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1375183_23	phrog_363	255.6	0	DNA methyltransferase	other
UniRef90	UHGV-1375183_23	UniRef90_A0A6I2QZV1	633.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-1375183_23	742738.HMPREF9460_04053	622.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1375183_23	MTase_II_00058	126.6	3.7e-37	Type II methyltransferase	RM
Pfam	UHGV-1375183_23	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1375183_23	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1375183_23	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1375183_23	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
UniRef90	UHGV-1375183_24	UniRef90_UPI0018AC26C5	97.1	2.15e-24	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-1375183_24	742738.HMPREF9460_04054	73.9	5.6e-16	Restriction alleviation protein Lar	N/A
structural_annotation	UHGV-1375183_24	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1375183_25	phrog_25732	127.7	0	N/A	unknown function
structural_annotation	UHGV-1375183_26	NF000937	N/A	N/A	N/A	N/A
PHROG	UHGV-1375183_28	phrog_38832	43.9	3.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-1375183_28	665956.HMPREF1032_00143	61.2	0.00000000171	N/A	N/A
PHROG	UHGV-1375183_31	phrog_1934	133.1	1.1e-39	N/A	unknown function
UniRef90	UHGV-1375183_31	UniRef90_UPI0018AC0226	327.0	0	zinc-finger-containing protein	N/A
eggNOG-mapper	UHGV-1375183_31	397290.C810_01488	163.0	0	zinc-finger-containing domain	N/A
Pfam	UHGV-1375183_31	PF11672	N/A	N/A	zinc-finger-containing domain	DUF3268
structural_annotation	UHGV-1375183_31	PF11672	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1375183_32	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1375183_34	phrog_374	132.1	6.1e-39	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1375183_34	UniRef90_A0A6L8SWJ4	132.0	1.92e-35	AP2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1375183_34	411462.DORLON_00791	112.0	1.59e-28	N/A	N/A
KOfam	UHGV-1375183_35	K22299	56.2	8.8e-16	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1375183_35	phrog_8	71.7	1.4e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-1375183_35	UniRef90_A0A4D7AHN1	154.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1375183_35	1226322.HMPREF1545_00039	77.4	8.01e-18	sequence-specific DNA binding	N/A
Pfam	UHGV-1375183_35	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1375183_35	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1375183_35	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1375183_36	K22300	49.8	0.000000000000052	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1375183_36	phrog_4836	40.8	0.000000000025	CII-like regulator	transcription regulation
UniRef90	UHGV-1375183_36	UniRef90_U2R0P8	293.0	0	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1375183_36	1226322.HMPREF1545_02890	293.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1375183_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1375183_36	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-1375183_38	cluster_2194	31.6	0.00066	NA	N/A
UniRef90	UHGV-1375183_39	UniRef90_UPI0018AC41F1	268.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1375183_39	1226322.HMPREF1545_00042	160.0	0	N/A	N/A
structural_annotation	UHGV-1375183_39	PF13542	N/A	N/A	N/A	N/A
KOfam	UHGV-1375183_40	K06909	217.3	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1375183_40	phrog_3717	188.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-1375183_40	UniRef90_UPI001105ADB4	776.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1375183_40	1226322.HMPREF1545_03843	684.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-1375183_40	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-1375183_40	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1375183_40	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1375183_40	PF04466,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1375183_41	phrog_156	286.7	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1375183_41	1519439.JPJG01000060_gene1886	689.0	0	N/A	N/A
structural_annotation	UHGV-1375183_41	PF16510,MF_04120,TIGR01542,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1375183_43	phrog_35275	166.7	0	N/A	unknown function
eggNOG-mapper	UHGV-1375183_43	1226322.HMPREF1545_03846	143.0	2.18e-37	N/A	N/A
PHROG	UHGV-1375183_44	phrog_24113	241.3	0	N/A	unknown function
eggNOG-mapper	UHGV-1375183_44	1226322.HMPREF1545_03847	245.0	0	N/A	N/A
structural_annotation	UHGV-1375183_44	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-1375183_45	phrog_371	175.3	0	major head protein	head and packaging
UniRef90	UHGV-1375183_45	UniRef90_R6TFU9	338.0	0	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-1375183_45	1226322.HMPREF1545_03848	522.0	0	N/A	N/A
Pfam	UHGV-1375183_45	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-1375183_45	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1375183_46	phrog_12105	125.5	2.4e-37	N/A	unknown function
eggNOG-mapper	UHGV-1375183_46	1226322.HMPREF1545_03850	109.0	2.78e-29	N/A	N/A
KOfam	UHGV-1375183_47	K19721	59.1	1.7e-17	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-1375183_47	phrog_6320	78.1	1.5e-22	tail fiber protein	tail
UniRef90	UHGV-1375183_47	UniRef90_UPI0018A912A6	634.0	0	collagen-like protein	N/A
Pfam	UHGV-1375183_47	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-1375183_48	phrog_10993	191.8	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-1375183_48	UniRef90_UPI0018AA21C1	473.0	0	N/A	N/A
eggNOG-mapper	UHGV-1375183_48	1226322.HMPREF1545_00064	183.0	0	N/A	N/A
Pfam	UHGV-1375183_48	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1375183_48	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-1375183_49	phrog_10993	212.5	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-1375183_49	UniRef90_UPI0018AA16B6	488.0	0	N/A	N/A
eggNOG-mapper	UHGV-1375183_49	742738.HMPREF9460_02534	251.0	0	N/A	N/A
Pfam	UHGV-1375183_49	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1375183_49	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-1375183_50	phrog_37900	74.9	1.7e-22	N/A	unknown function
UniRef90	UHGV-1375183_50	UniRef90_UPI0018A945F9	483.0	0	N/A	N/A
eggNOG-mapper	UHGV-1375183_50	1519439.JPJG01000060_gene1894	257.0	0	N/A	N/A
Pfam	UHGV-1375183_50	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-1375183_50	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-1375183_50	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-1375183_51	phrog_27545	226.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1375183_51	742738.HMPREF9460_00363	259.0	0	N/A	N/A
KOfam	UHGV-1375183_54	K01448	176.2	0	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1375183_54	phrog_18955	389.6	0	N/A	unknown function
UniRef90	UHGV-1375183_54	UniRef90_A0A1C7FQI4	801.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-1375183_54	1121344.JHZO01000003_gene744	264.0	0	Ami_3	N/A
Pfam	UHGV-1375183_54	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-1375183_54	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-1375183_54	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1375183_54	PF01520,PF09992,MF_00417,TIGR02883,COG0860,COG4632	N/A	N/A	N/A	N/A
PHROG	UHGV-1375183_55	phrog_1129	76.7	1.9e-22	holin	lysis
UniRef90	UHGV-1375183_55	UniRef90_A0A1C7FPV3	164.0	0	Enolase	N/A
eggNOG-mapper	UHGV-1375183_55	1226322.HMPREF1545_00069	140.0	1.80067e-42	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1375183_55	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1375183_55	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1375183_56	phrog_4105	83.2	2.4e-24	N/A	unknown function
eggNOG-mapper	UHGV-1375183_56	537013.CLOSTMETH_01753	83.2	2.79e-19	N/A	N/A
PHROG	UHGV-1375183_57	phrog_16040	46.3	0.00000000000023	virion structural protein	head and packaging
UniRef90	UHGV-1375183_57	UniRef90_A0A174SCI3	523.0	0	Reovirus sigma C capsid protein	N/A
eggNOG-mapper	UHGV-1375183_57	1226322.HMPREF1545_00783	81.6	0.0000000000000237	Chaperone of endosialidase	N/A
eggNOG-mapper	UHGV-1375183_58	1227349.C170_22575	70.5	0.00000000000691	Fibronectin type 3 domain	N/A
COG	UHGV-1375183_58	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-1375183_58	PF17166,NF038367,COG2033	N/A	N/A	N/A	N/A
PHROG	UHGV-1375183_60	phrog_511	245.3	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1375183_60	1519439.JPJG01000060_gene1903	613.0	0	N/A	N/A
structural_annotation	UHGV-1375183_60	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1375183_61	1226322.HMPREF1545_00786	194.0	0	N/A	N/A
UniRef90	UHGV-1375183_62	UniRef90_U2AS96	1775.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1375183_62	693746.OBV_01590	583.0	0	N/A	N/A
PHROG	UHGV-1375183_63	phrog_1758	60.4	3.1e-17	acetyltransferase	other
UniRef90	UHGV-1375183_63	UniRef90_A0A174ISH4	350.0	0	N-acetyltransferase domain-containing protein	N/A
eggNOG-mapper	UHGV-1375183_63	1487921.DP68_15595	88.2	1.16e-19	transferase activity, transferring acyl groups	N/A
COG	UHGV-1375183_63	COG3153	N/A	N/A	Predicted N-acetyltransferase YhbS	N/A
structural_annotation	UHGV-1375183_63	PF13673,MF_00824,NF010241,COG3153	N/A	N/A	N/A	N/A
PHROG	UHGV-1375183_65	phrog_21664	55.8	0.0000000000000011	N/A	unknown function
UniRef90	UHGV-1375183_65	UniRef90_A0A174IZW3	273.0	0	Preprotein translocase subunit SecB	N/A
eggNOG-mapper	UHGV-1375183_65	1280689.AUJC01000016_gene85	80.5	1.83e-17	protein tetramerization	N/A
COG	UHGV-1375183_65	COG1952	N/A	N/A	Preprotein translocase subunit SecB	N/A
structural_annotation	UHGV-1375183_65	PF02556,MF_00821,NF004391,COG1952	N/A	N/A	N/A	N/A