UHGV-1375432 (vOTU-057647)

Viral Genome: UHGV-1375432

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1375432
vOTU ID	vOTU-057647
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0292578
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9799
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.43
Jumbo phage	No

Genome content
Genome length (bp)	44,745
GC content	55.52%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	63
CDS density	91%
Average CDS length (bps)	648.62
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1375432_2	phrog_36	72.2	9.3e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-1375432_2	UniRef90_A0A6P1TQZ5	52.4	0.00000669	N/A	N/A
Pfam	UHGV-1375432_2	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-1375432_2	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1375432_2	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-1375432_3	phrog_5070	142.2	1.90016e-42	N/A	unknown function
eggNOG-mapper	UHGV-1375432_3	1094556.MCY_01120	79.7	0.0000000000000213	Homologous to orf229 gp Streptococcus thermophilus bacteriophage Sfi19 gi 9632919 ref NP_049948.1	N/A
COG	UHGV-1375432_3	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-1375432_3	MF_01691,NF040481	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1375432_4	1235798.C817_04600	63.9	0.00000000000884	N/A	N/A
structural_annotation	UHGV-1375432_4	PF13560,NF040522	N/A	N/A	N/A	N/A
UniRef90	UHGV-1375432_7	UniRef90_W1I3U4	144.0	3.46121e-43	Uncultured bacterium extrachromosomal DNA RGI00970	N/A
PHROG	UHGV-1375432_9	phrog_19458	275.7	0	primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1375432_9	UniRef90_A0A1V5KAU2	220.0	0	DarA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1375432_9	657322.FPR_26770	334.0	0	N/A	N/A
COG	UHGV-1375432_9	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
structural_annotation	UHGV-1375432_11	PF03869	N/A	N/A	N/A	N/A
KOfam	UHGV-1375432_13	K21523	46.9	0.00000000000012	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-1375432_13	phrog_2	94.2	2.5e-27	terminase large subunit	head and packaging
UniRef90	UHGV-1375432_13	UniRef90_UPI001F401ABC	532.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1375432_13	316274.Haur_1384	145.0	3.88e-36	N/A	N/A
Pfam	UHGV-1375432_13	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1375432_13	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
PHROG	UHGV-1375432_14	phrog_3287	178.9	0	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1375432_14	665956.HMPREF1032_03917	672.0	0	N/A	N/A
structural_annotation	UHGV-1375432_14	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-1375432_16	phrog_35275	61.1	1.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-1375432_16	1226322.HMPREF1545_03846	71.6	0.0000000000153	N/A	N/A
PHROG	UHGV-1375432_17	phrog_24113	55.7	7e-16	N/A	unknown function
eggNOG-mapper	UHGV-1375432_17	1226322.HMPREF1545_03847	50.1	0.0000065	N/A	N/A
structural_annotation	UHGV-1375432_17	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-1375432_18	phrog_371	139.6	1.40004e-41	major head protein	head and packaging
UniRef90	UHGV-1375432_18	UniRef90_A0A1Y4TDW7	474.0	0	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-1375432_18	1226322.HMPREF1545_03848	285.0	0	N/A	N/A
Pfam	UHGV-1375432_18	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-1375432_18	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1375432_19	phrog_156	236.4	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1375432_19	693746.OBV_23930	465.0	0	N/A	N/A
structural_annotation	UHGV-1375432_19	PF12236,MF_04120,TIGR01542,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-1375432_20	phrog_13046	42.9	0.0000000000018	N/A	unknown function
eggNOG-mapper	UHGV-1375432_20	693746.OBV_23880	104.0	2.89e-25	N/A	N/A
structural_annotation	UHGV-1375432_20	PF20387	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1375432_21	665956.HMPREF1032_03918	112.0	5.08e-25	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A
eggNOG-mapper	UHGV-1375432_22	411483.FAEPRAA2165_00757	144.0	5.63e-35	N/A	N/A
Pfam	UHGV-1375432_22	PF19079	N/A	N/A	Collagen-flanked surface repeat	CFSR
KOfam	UHGV-1375432_24	K07273	207.7	0	acm; lysozyme	N/A
PHROG	UHGV-1375432_24	phrog_291	164.5	0	endolysin	lysis
UniRef90	UHGV-1375432_24	UniRef90_UPI00164A97A0	204.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-1375432_24	537013.CLOSTMETH_03464	158.0	5.395e-43	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1375432_24	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1375432_24	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1375432_24	PF01183,PF05194,COG3757	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1375432_25	97138.C820_00248	62.4	0.00000000000891	N/A	N/A
PHROG	UHGV-1375432_26	phrog_1129	78.9	4.1e-23	holin	lysis
UniRef90	UHGV-1375432_26	UniRef90_UPI001F43F0BF	133.0	4.49e-39	phage holin family protein	N/A
eggNOG-mapper	UHGV-1375432_26	1256908.HMPREF0373_00463	125.0	9.49e-37	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1375432_26	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1375432_26	PF06946	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1375432_27	PF07638,MF_00674,TIGR02954,COG1846	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1375432_30	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1375432_32	1506994.JNLQ01000004_gene3618	214.0	0	N/A	N/A
UniRef90	UHGV-1375432_33	UniRef90_A0A4R1R5G7	77.8	3.22e-18	Anaerobic ribonucleoside-triphosphate reductase-like protein	N/A
eggNOG-mapper	UHGV-1375432_33	658088.HMPREF0987_00997	77.0	1.09e-18	Anaerobic ribonucleoside-triphosphate reductase	N/A
Pfam	UHGV-1375432_33	PF13597	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	NRDD
COG	UHGV-1375432_33	COG1328	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	N/A
KOfam	UHGV-1375432_34	K14059	91.3	1.7e-26	int; integrase	N/A
PHROG	UHGV-1375432_34	phrog_1	95.6	7e-28	integrase	integration and excision
UniRef90	UHGV-1375432_34	UniRef90_UPI001897E1C8	162.0	1.48958e-42	site-specific integrase	N/A
eggNOG-mapper	UHGV-1375432_34	411471.SUBVAR_07390	94.7	3.41e-19	Phage integrase family	N/A
COG	UHGV-1375432_34	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1375432_34	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
Pfam	UHGV-1375432_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1375432_35	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1375432_35	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1375432_36	324057.Pjdr2_0635	55.8	0.000000174	N/A	N/A
structural_annotation	UHGV-1375432_36	PF10358	N/A	N/A	N/A	N/A
COG	UHGV-1375432_38	COG4197	N/A	N/A	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	N/A
structural_annotation	UHGV-1375432_38	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1375432_39	phrog_8	46.4	0.00000000000091	transcriptional regulator	transcription regulation
UniRef90	UHGV-1375432_39	UniRef90_UPI001C009F10	112.0	3.1e-31	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-1375432_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1375432_39	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1375432_39	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1375432_40	phrog_463	208.8	0	anti-repressor	transcription regulation
UniRef90	UHGV-1375432_40	UniRef90_UPI00137B411D	276.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-1375432_40	411490.ANACAC_00813	225.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1375432_40	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1375432_40	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-1375432_40	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1375432_40	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1375432_41	PF10743,NF033787	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1375432_42	596152.DesU5LDRAFT_1910	88.2	1.25e-18	N/A	N/A
structural_annotation	UHGV-1375432_42	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1375432_45	1203606.HMPREF1526_00240	111.0	9.04e-31	N/A	N/A
structural_annotation	UHGV-1375432_45	PF18419	N/A	N/A	N/A	N/A
PHROG	UHGV-1375432_48	phrog_253	111.6	7.2e-33	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1375432_48	UniRef90_E2ZNS5	150.0	8.40779e-44	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-1375432_48	748224.HMPREF9436_03356	150.0	1.4013e-44	Siphovirus Gp157	N/A
Pfam	UHGV-1375432_48	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1375432_48	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-1375432_49	phrog_14970	272.2	0	N/A	unknown function
UniRef90	UHGV-1375432_49	UniRef90_A0A3P6JH63	228.0	0	Essential recombination function protein	N/A
eggNOG-mapper	UHGV-1375432_49	411468.CLOSCI_00315	213.0	0	double-strand break repair protein	N/A
Pfam	UHGV-1375432_49	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-1375432_49	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1375432_49	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1375432_50	phrog_72	61.6	1.2e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1375432_50	UniRef90_UPI000C7BF263	172.0	0	recombination protein NinB	N/A
eggNOG-mapper	UHGV-1375432_50	445972.ANACOL_01825	136.0	1.84e-38	N/A	N/A
structural_annotation	UHGV-1375432_50	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1375432_51	phrog_7566	79.6	2.8e-23	N/A	unknown function
UniRef90	UHGV-1375432_51	UniRef90_A0A8D9UHC0	78.6	8.56e-17	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-1375432_51	693746.OBV_25470	85.5	4.76e-20	N/A	N/A
KOfam	UHGV-1375432_52	K03111	118.7	8.6e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1375432_52	phrog_44	123.9	1.4e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1375432_52	UniRef90_R6I6X7	132.0	5.93e-37	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1375432_52	445972.ANACOL_01827	124.0	7.97e-35	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1375432_52	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1375432_52	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1375432_52	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1375432_52	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1375432_52	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1375432_53	phrog_270	110.2	2.6e-32	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1375432_53	UniRef90_UPI000497F8A6	150.0	1.24996e-41	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1375432_53	1232446.BAIE02000002_gene816	150.0	2.10055e-42	N/A	N/A
structural_annotation	UHGV-1375432_53	PF05584,MF_01819,TIGR01610,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-1375432_54	K02314	229.2	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1375432_54	phrog_19	220.1	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1375432_54	UniRef90_UPI001F1C052D	436.0	0	replicative DNA helicase	N/A
eggNOG-mapper	UHGV-1375432_54	1203606.HMPREF1526_01325	161.0	2.3696e-42	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1375432_54	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1375432_54	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1375432_54	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1375432_54	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-1375432_55	K01160	45.7	0.0000000000018	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1375432_55	phrog_1682	68.8	9.1e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1375432_55	UniRef90_UPI0009406B47	96.7	1.91e-23	endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1375432_55	220668.lp_2433	92.4	1.48e-22	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-1375432_55	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1375432_55	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1375432_56	phrog_236	84.0	3e-24	nucleotide kinase	other
UniRef90	UHGV-1375432_56	UniRef90_UPI000D110E3A	100.0	3.1e-25	N/A	N/A
eggNOG-mapper	UHGV-1375432_56	1236504.HMPREF2132_11120	80.5	2.6e-18	N/A	N/A
Pfam	UHGV-1375432_56	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-1375432_56	PF11753	N/A	N/A	N/A	N/A
PHROG	UHGV-1375432_61	phrog_6721	290.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1375432_61	665950.HMPREF1025_01974	269.0	0	N/A	N/A
structural_annotation	UHGV-1375432_61	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-1375432_63	phrog_3136	120.3	7.5e-36	N/A	unknown function
UniRef90	UHGV-1375432_63	UniRef90_A0A3D0HBD2	126.0	7.12e-34	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1375432_63	97139.C824_00742	76.3	0.00000000000000265	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1375432_63	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1375432_63	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A