UHGV-1376075 (vOTU-057766)

Viral Genome: UHGV-1376075

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1376075
vOTU ID	vOTU-057766
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0296870
Associated BioSample	SAMN02334102
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9795
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.96
Jumbo phage	No

Genome content
Genome length (bp)	45,710
GC content	46.27%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	70
CDS density	91%
Average CDS length (bps)	591.99
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1376075_2	K14059	131.9	9.3e-39	int; integrase	N/A
PHROG	UHGV-1376075_2	phrog_1	158.8	0	integrase	integration and excision
UniRef90	UHGV-1376075_2	UniRef90_R6X1Y3	424.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1376075_2	1123288.SOV_2c10320	278.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1376075_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1376075_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1376075_2	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1376075_4	K18830	68.3	1.8e-19	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1376075_4	phrog_8	54.4	0.0000000000000027	transcriptional regulator	transcription regulation
UniRef90	UHGV-1376075_4	UniRef90_R6X1Y8	211.0	0	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-1376075_4	1151292.QEW_0725	94.4	2.54e-23	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-1376075_4	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1376075_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1376075_4	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1376075_8	phrog_6058	68.3	7.6e-20	N/A	unknown function
UniRef90	UHGV-1376075_8	UniRef90_A0A0U9H7T0	68.9	0.0000000000000535	Modification methylase SinI	N/A
eggNOG-mapper	UHGV-1376075_8	1238184.CM001792_gene70	69.3	0.00000000000000558	N/A	N/A
structural_annotation	UHGV-1376075_9	NF041909	N/A	N/A	N/A	N/A
UniRef90	UHGV-1376075_10	UniRef90_R6WTN1	118.0	2.85e-32	Peptidoglycan-binding LysM	N/A
Pfam	UHGV-1376075_10	PF01476	N/A	N/A	LysM domain	LysM
structural_annotation	UHGV-1376075_10	MF_02014,NF010723,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-1376075_12	phrog_434	321.4	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376075_12	UniRef90_R6WGP6	495.0	0	Putative phage-type endonuclease	N/A
eggNOG-mapper	UHGV-1376075_12	706434.HMPREF9429_00770	341.0	0	YqaJ viral recombinase family protein	N/A
Pfam	UHGV-1376075_12	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1376075_12	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1376075_12	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1376075_12	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-1376075_13	K07455	180.1	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1376075_13	phrog_148	190.9	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376075_13	UniRef90_R6XVK6	442.0	0	Putative phage RecT family protein	N/A
eggNOG-mapper	UHGV-1376075_13	224308.BSU26280	164.0	0	RecT family	N/A
Pfam	UHGV-1376075_13	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1376075_13	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1376075_13	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1376075_13	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1376075_14	phrog_4880	152.6	2.8026e-45	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376075_14	UniRef90_R6WTP4	344.0	0	N-terminal phage replisome organizer	N/A
eggNOG-mapper	UHGV-1376075_14	411470.RUMGNA_02197	132.0	3.91e-34	phage replisome	N/A
Pfam	UHGV-1376075_14	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-1376075_14	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-1376075_14	PF09681,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
PHROG	UHGV-1376075_15	phrog_9804	49.2	0.000000000000079	N/A	unknown function
UniRef90	UHGV-1376075_15	UniRef90_A0A847YIN4	57.4	0.0000005	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-1376075_15	1280706.AUJE01000046_gene1152	68.2	0.0000000000127	N/A	N/A
structural_annotation	UHGV-1376075_15	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-1376075_17	K00558	134.9	5.30001e-40	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1376075_17	phrog_116	151.1	5.60519e-45	DNA methyltransferase	other
UniRef90	UHGV-1376075_17	UniRef90_A7AY33	212.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1376075_17	411470.RUMGNA_00198	212.0	0	N/A	N/A
PADLOC	UHGV-1376075_17	MTase_II_00058	161.1	0	Type II methyltransferase	RM
Pfam	UHGV-1376075_17	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1376075_17	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1376075_17	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1376075_17	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-1376075_18	K00558	70.8	1.5e-20	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1376075_18	phrog_26324	101.6	4.7e-30	DNA methyltransferase	other
UniRef90	UHGV-1376075_18	UniRef90_R6WTQ1	260.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1376075_18	1201292.DR75_1527	174.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1376075_18	oMTase_00023	68.5	6.89999e-40	orphan methyltransferase	RM
Pfam	UHGV-1376075_18	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1376075_18	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-1376075_21	phrog_10714	50.7	0.000000000000031	N/A	unknown function
structural_annotation	UHGV-1376075_21	PF21173	N/A	N/A	N/A	N/A
PHROG	UHGV-1376075_22	phrog_4856	47.8	0.00000000000023	nucleoside triphosphate pyrophosphohydrolase	other
structural_annotation	UHGV-1376075_22	PF02185	N/A	N/A	N/A	N/A
PHROG	UHGV-1376075_29	phrog_8514	45.1	0.0000000000019	N/A	unknown function
KOfam	UHGV-1376075_31	K01160	65.9	1.2e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1376075_31	phrog_140	148.1	3.64338e-44	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376075_31	UniRef90_A0A316S9J1	144.0	8.07008e-42	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1376075_31	146269.A8YQM5_9CAUD	137.0	1.15e-39	magnesium ion binding	N/A
Pfam	UHGV-1376075_31	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
structural_annotation	UHGV-1376075_31	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1376075_32	K03111	42.8	0.000000000012	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1376075_32	phrog_44	61.9	1.8e-17	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376075_32	UniRef90_A0A7W1JM63	70.9	0.000000000000761	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1376075_32	1329250.WOSG25_041510	61.2	0.00000000085	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1376075_32	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-1376075_32	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1376075_32	PF00436,MF_00984,NF005242,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1376075_38	phrog_15863	269.2	0	N/A	unknown function
UniRef90	UHGV-1376075_38	UniRef90_R6WLL6	509.0	0	Cytochrome c domain-containing protein	N/A
eggNOG-mapper	UHGV-1376075_38	693746.OBV_01780	124.0	4.24e-32	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-1376075_38	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
structural_annotation	UHGV-1376075_41	PF13983	N/A	N/A	N/A	N/A
UniRef90	UHGV-1376075_42	UniRef90_UPI00103300F2	66.6	0.000000000000966	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1376075_42	1050201.KB913034_gene791	49.7	0.000000943	N/A	N/A
structural_annotation	UHGV-1376075_42	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
Pfam	UHGV-1376075_43	PF02178	N/A	N/A	AT hook motif	AT_hook
KOfam	UHGV-1376075_44	K06909	75.2	1e-21	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1376075_44	phrog_2	149.9	3.08286e-44	terminase large subunit	head and packaging
UniRef90	UHGV-1376075_44	UniRef90_UPI001D00EC11	388.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1376075_44	585503.HMPREF7545_1731	392.0	0	Terminase-like family	N/A
Pfam	UHGV-1376075_44	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1376075_44	COG5323	N/A	N/A	Phage large terminase packaging protein	N/A
structural_annotation	UHGV-1376075_44	PF03237,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-1376075_46	phrog_332	430.6	0	head-tail adaptor	connector
UniRef90	UHGV-1376075_46	UniRef90_UPI001F3F9DD9	522.0	0	portal protein	N/A
eggNOG-mapper	UHGV-1376075_46	568816.Acin_1834	626.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-1376075_46	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-1376075_46	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1376075_47	phrog_528	94.1	6e-28	N/A	unknown function
eggNOG-mapper	UHGV-1376075_47	1401067.HMPREF0872_06805	90.5	9.58e-22	N/A	N/A
PHROG	UHGV-1376075_48	phrog_458	135.3	6e-40	protease	other
UniRef90	UHGV-1376075_48	UniRef90_UPI0019E883D9	73.2	0.00000000000407	peptidase	N/A
eggNOG-mapper	UHGV-1376075_48	568816.Acin_1832	111.0	1.3e-27	N/A	N/A
PHROG	UHGV-1376075_49	phrog_212	125.6	0	major head protein	head and packaging
UniRef90	UHGV-1376075_49	UniRef90_A0A345BQX7	228.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-1376075_49	568816.Acin_1831	358.0	0	N/A	N/A
Pfam	UHGV-1376075_49	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-1376075_49	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1376075_50	phrog_427	63.5	3.4e-18	N/A	unknown function
Pfam	UHGV-1376075_50	PF21190	N/A	N/A	Bbp16	Bbp16
structural_annotation	UHGV-1376075_50	PF21190	N/A	N/A	N/A	N/A
PHROG	UHGV-1376075_52	phrog_394	150.5	7.00649e-45	tail protein	tail
UniRef90	UHGV-1376075_52	UniRef90_A0A0U1KW64	124.0	1.77e-32	N/A	N/A
eggNOG-mapper	UHGV-1376075_52	1123288.SOV_1c10710	124.0	2.97e-33	N/A	N/A
structural_annotation	UHGV-1376075_52	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-1376075_53	phrog_376	560.0	0	tail protein	tail
UniRef90	UHGV-1376075_53	UniRef90_A0A0U1KV93	318.0	0	N/A	N/A
eggNOG-mapper	UHGV-1376075_53	568816.Acin_1828	689.0	0	N/A	N/A
Pfam	UHGV-1376075_53	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
structural_annotation	UHGV-1376075_53	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-1376075_54	phrog_308	89.9	2.8e-26	internal virion protein	head and packaging
structural_annotation	UHGV-1376075_54	PF13420,MF_02210,NF011709,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-1376075_55	phrog_418	88.6	9.8e-26	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1376075_55	568816.Acin_1826	105.0	1.9e-25	N/A	N/A
structural_annotation	UHGV-1376075_55	PF16789,TIGR02971,COG3524	N/A	N/A	N/A	N/A
UniRef90	UHGV-1376075_56	UniRef90_A0A1Q6RQM5	553.0	0	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-1376075_56	1401067.HMPREF0872_06760	81.3	0.000000000000552	N/A	N/A
structural_annotation	UHGV-1376075_56	PF01464,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-1376075_57	phrog_9880	486.6	0	N/A	unknown function
UniRef90	UHGV-1376075_57	UniRef90_A0A1Q6RQR6	2149.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1376075_57	1200557.JHWV01000001_gene264	198.0	0	N/A	N/A
Pfam	UHGV-1376075_57	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
PHROG	UHGV-1376075_58	phrog_6921	81.4	1.4e-23	tail fiber protein	tail
UniRef90	UHGV-1376075_58	UniRef90_C3X8V7	130.0	1.39e-28	Phage Tail Collar Domain protein	N/A
eggNOG-mapper	UHGV-1376075_58	556269.ACDQ01000006_gene1705	136.0	4e-32	Phage Tail Collar Domain	N/A
COG	UHGV-1376075_58	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1376075_58	PF03906,NF012201,COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-1376075_59	phrog_1141	59.6	6e-17	tail fiber protein	tail
UniRef90	UHGV-1376075_59	UniRef90_A0A1Q6R2G9	142.0	7.37994e-41	N/A	N/A
eggNOG-mapper	UHGV-1376075_59	556269.ACDQ01000006_gene1645	69.7	0.000000000000922	N/A	N/A
Pfam	UHGV-1376075_59	PF14301	N/A	N/A	N/A	DUF4376
structural_annotation	UHGV-1376075_59	PF14301	N/A	N/A	N/A	N/A
PHROG	UHGV-1376075_60	phrog_4105	79.8	2.7e-23	N/A	unknown function
eggNOG-mapper	UHGV-1376075_60	1120998.AUFC01000030_gene2251	77.8	4.22e-17	N/A	N/A
PHROG	UHGV-1376075_62	phrog_918	97.9	5.2e-29	N/A	unknown function
UniRef90	UHGV-1376075_62	UniRef90_UPI000EC62F11	144.0	3.61535e-43	N/A	N/A
eggNOG-mapper	UHGV-1376075_62	537007.BLAHAN_05515	137.0	5.08994e-41	N/A	N/A
Pfam	UHGV-1376075_62	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-1376075_62	PF19791	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1376075_63	1392502.JNIO01000008_gene1280	226.0	0	N/A	N/A
structural_annotation	UHGV-1376075_63	PF21277	N/A	N/A	N/A	N/A
PHROG	UHGV-1376075_64	phrog_32732	57.0	3.6e-16	N/A	unknown function
UniRef90	UHGV-1376075_64	UniRef90_UPI0018C475E7	55.8	0.0000000405	N/A	N/A
eggNOG-mapper	UHGV-1376075_64	1415774.U728_724	64.3	0.00000000000738	Phage protein (N4 Gp49/phage Sf6 gene 66) family	N/A
dbAPIS	UHGV-1376075_64	APIS070	N/A	N/A	N/A	N/A
UniRef90	UHGV-1376075_67	UniRef90_A0A316S6W0	92.0	8.05e-23	HTH luxR-type domain-containing protein	N/A
Pfam	UHGV-1376075_67	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-1376075_67	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-1376075_67	PF08281,MF_00674,NF001073,COG2739	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1376075_69	PF18573,NF033147	N/A	N/A	N/A	N/A