UHGV-1376322 (vOTU-006761)

Viral Genome: UHGV-1376322

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1376322
vOTU ID	vOTU-006761
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0292141
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9775
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.31
Jumbo phage	No

Genome content
Genome length (bp)	44,645
GC content	55.68%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	69
CDS density	92%
Average CDS length (bps)	595.30
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1376322_1	phrog_31538	56.3	6.3e-16	N/A	unknown function
PHROG	UHGV-1376322_2	phrog_13589	205.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1376322_2	411460.RUMTOR_01324	237.0	0	N/A	N/A
eggNOG-mapper	UHGV-1376322_3	290402.Cbei_3386	58.2	0.000000695	N/A	N/A
KOfam	UHGV-1376322_5	K07273	201.4	0	acm; lysozyme	N/A
PHROG	UHGV-1376322_5	phrog_291	153.0	2.8026e-45	endolysin	lysis
UniRef90	UHGV-1376322_5	UniRef90_UPI00164A97A0	204.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-1376322_5	537013.CLOSTMETH_03464	165.0	1.4013e-45	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1376322_5	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1376322_5	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1376322_5	PF01183,PF05194,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1376322_6	phrog_1009	41.1	0.000000000026	N/A	unknown function
eggNOG-mapper	UHGV-1376322_6	97138.C820_00248	62.0	0.0000000000126	N/A	N/A
PHROG	UHGV-1376322_7	phrog_1129	79.2	3.2e-23	holin	lysis
UniRef90	UHGV-1376322_7	UniRef90_A0A3R5ZDU6	135.0	6.15e-40	Holin	N/A
eggNOG-mapper	UHGV-1376322_7	1256908.HMPREF0373_00463	128.0	1.16e-37	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1376322_7	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1376322_7	PF06946	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1376322_8	PF07638,MF_00674,TIGR02954,COG1846	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1376322_11	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1376322_13	1506994.JNLQ01000004_gene3618	209.0	0	N/A	N/A
UniRef90	UHGV-1376322_14	UniRef90_A0A4R1R5G7	77.8	3.22e-18	Anaerobic ribonucleoside-triphosphate reductase-like protein	N/A
eggNOG-mapper	UHGV-1376322_14	658088.HMPREF0987_00997	77.0	1.09e-18	Anaerobic ribonucleoside-triphosphate reductase	N/A
Pfam	UHGV-1376322_14	PF13597	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	NRDD
COG	UHGV-1376322_14	COG1328	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	N/A
KOfam	UHGV-1376322_15	K14059	103.3	3.5e-30	int; integrase	N/A
PHROG	UHGV-1376322_15	phrog_1	111.7	8.5e-33	integrase	integration and excision
UniRef90	UHGV-1376322_15	UniRef90_UPI001897E1C8	158.0	5.87999e-41	site-specific integrase	N/A
eggNOG-mapper	UHGV-1376322_15	1410633.JHWR01000028_gene773	108.0	7.58e-24	Phage integrase family	N/A
Pfam	UHGV-1376322_15	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1376322_15	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1376322_15	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
Pfam	UHGV-1376322_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1376322_16	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1376322_16	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1376322_17	1268072.PSAB_08410	53.1	0.00000187	N/A	N/A
structural_annotation	UHGV-1376322_17	PF10358	N/A	N/A	N/A	N/A
COG	UHGV-1376322_19	COG4197	N/A	N/A	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	N/A
structural_annotation	UHGV-1376322_19	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1376322_20	phrog_8	46.4	0.00000000000085	transcriptional regulator	transcription regulation
UniRef90	UHGV-1376322_20	UniRef90_UPI001C009F10	112.0	3.1e-31	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-1376322_20	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1376322_20	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1376322_20	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1376322_21	phrog_463	207.4	0	anti-repressor	transcription regulation
UniRef90	UHGV-1376322_21	UniRef90_UPI00156FBCEE	277.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-1376322_21	411490.ANACAC_00813	230.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1376322_21	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1376322_21	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-1376322_21	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1376322_21	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1376322_22	PF10743,NF033787	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1376322_23	596152.DesU5LDRAFT_1910	94.7	3.81e-21	N/A	N/A
structural_annotation	UHGV-1376322_23	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1376322_24	PF11034	N/A	N/A	N/A	N/A
PHROG	UHGV-1376322_29	phrog_253	113.5	1.7e-33	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376322_29	UniRef90_E2ZNS5	157.0	0	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-1376322_29	748224.HMPREF9436_03356	157.0	0	Siphovirus Gp157	N/A
Pfam	UHGV-1376322_29	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1376322_29	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-1376322_30	phrog_7838	137.1	1.4e-40	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376322_30	UniRef90_A0A8D9UGW3	221.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-1376322_30	742767.HMPREF9456_02052	175.0	0	N/A	N/A
structural_annotation	UHGV-1376322_30	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-1376322_31	phrog_72	59.0	5.9e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376322_31	UniRef90_UPI000C7BF263	168.0	0	recombination protein NinB	N/A
eggNOG-mapper	UHGV-1376322_31	445972.ANACOL_01825	142.0	9.95006e-41	N/A	N/A
structural_annotation	UHGV-1376322_31	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1376322_32	phrog_7566	80.9	1e-23	N/A	unknown function
UniRef90	UHGV-1376322_32	UniRef90_A0A8D9UHC0	76.6	4.88e-16	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-1376322_32	693746.OBV_25470	86.7	1.67e-20	N/A	N/A
KOfam	UHGV-1376322_33	K03111	121.4	1.2e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1376322_33	phrog_44	126.5	2e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376322_33	UniRef90_UPI001F420DC7	136.0	2.97e-38	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1376322_33	445972.ANACOL_01827	121.0	2.31e-33	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1376322_33	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1376322_33	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1376322_33	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1376322_33	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1376322_33	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1376322_34	phrog_270	120.4	1.9e-35	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376322_34	UniRef90_A0A3A6E2X3	102.0	5.67e-23	N/A	N/A
eggNOG-mapper	UHGV-1376322_34	768710.DesyoDRAFT_5236	100.0	7.55e-23	DnaD domain protein	N/A
Pfam	UHGV-1376322_34	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-1376322_34	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1376322_34	PF05584,MF_01819,TIGR01610,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-1376322_35	K02314	232.0	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1376322_35	phrog_19	218.6	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376322_35	UniRef90_UPI001F1C052D	437.0	0	replicative DNA helicase	N/A
eggNOG-mapper	UHGV-1376322_35	1203606.HMPREF1526_01325	164.0	2.34017e-43	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1376322_35	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1376322_35	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1376322_35	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1376322_35	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-1376322_36	K01160	44.2	0.000000000005	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1376322_36	phrog_1682	70.1	3.6e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376322_36	UniRef90_UPI0009406B47	99.0	2.36e-24	endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1376322_36	220668.lp_2433	94.7	1.83e-23	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-1376322_36	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1376322_36	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1376322_37	phrog_236	81.1	2.4e-23	nucleotide kinase	other
UniRef90	UHGV-1376322_37	UniRef90_UPI000D110E3A	98.6	1.26e-24	N/A	N/A
eggNOG-mapper	UHGV-1376322_37	1236504.HMPREF2132_11120	77.4	4.22e-17	N/A	N/A
Pfam	UHGV-1376322_37	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-1376322_37	PF11753	N/A	N/A	N/A	N/A
PHROG	UHGV-1376322_39	phrog_757	236.9	0	DNA methyltransferase	other
UniRef90	UHGV-1376322_39	UniRef90_UPI0006A41431	252.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1376322_39	1235790.C805_00032	266.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1376322_39	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1376322_39	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
UniRef90	UHGV-1376322_43	UniRef90_N9XC48	69.7	0.0000000000000204	Lar family restriction alleviation protein	N/A
Pfam	UHGV-1376322_43	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-1376322_43	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-1376322_43	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1376322_44	phrog_3136	126.4	8.8e-38	N/A	unknown function
UniRef90	UHGV-1376322_44	UniRef90_UPI001C02A61B	129.0	1.06e-33	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1376322_44	1007096.BAGW01000031_gene120	54.3	0.00000406	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1376322_44	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1376322_44	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1376322_45	phrog_18716	154.1	0	N/A	unknown function
UniRef90	UHGV-1376322_45	UniRef90_A0A5B9YFW1	183.0	0	N/A	N/A
eggNOG-mapper	UHGV-1376322_45	1029718.SFBM_0379	129.0	2.32e-36	N/A	N/A
Pfam	UHGV-1376322_45	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-1376322_45	PF18909	N/A	N/A	N/A	N/A
PHROG	UHGV-1376322_47	phrog_36	73.1	4.6e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-1376322_47	UniRef90_A0A6P1TQZ5	52.0	0.00000936	N/A	N/A
Pfam	UHGV-1376322_47	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-1376322_47	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1376322_47	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1376322_48	1235798.C817_04600	64.7	0.00000000000442	N/A	N/A
structural_annotation	UHGV-1376322_48	PF13560,NF040522	N/A	N/A	N/A	N/A
PHROG	UHGV-1376322_53	phrog_19458	282.6	0	primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376322_53	UniRef90_A0A1V5KAU2	224.0	0	DarA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1376322_53	657322.FPR_26770	328.0	0	N/A	N/A
COG	UHGV-1376322_53	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
Pfam	UHGV-1376322_57	PF08681	N/A	N/A	N/A	DUF1778
structural_annotation	UHGV-1376322_57	PF03869	N/A	N/A	N/A	N/A
KOfam	UHGV-1376322_59	K21523	48.6	0.00000000000004	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-1376322_59	phrog_2	103.1	3.7e-30	terminase large subunit	head and packaging
UniRef90	UHGV-1376322_59	UniRef90_UPI001F401ABC	654.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1376322_59	316274.Haur_1384	143.0	1.33e-34	N/A	N/A
Pfam	UHGV-1376322_59	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1376322_59	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-1376322_59	PF03354,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-1376322_60	phrog_3287	175.9	0	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1376322_60	665956.HMPREF1032_03917	671.0	0	N/A	N/A
structural_annotation	UHGV-1376322_60	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-1376322_63	phrog_35275	59.6	2.4e-17	N/A	unknown function
eggNOG-mapper	UHGV-1376322_63	1226322.HMPREF1545_03846	70.1	0.0000000000521	N/A	N/A
PHROG	UHGV-1376322_64	phrog_24113	55.7	6.5e-16	N/A	unknown function
eggNOG-mapper	UHGV-1376322_64	1226322.HMPREF1545_03847	50.1	0.0000065	N/A	N/A
structural_annotation	UHGV-1376322_64	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-1376322_65	phrog_371	139.6	1.29998e-41	major head protein	head and packaging
UniRef90	UHGV-1376322_65	UniRef90_A0A1Y4TDW7	474.0	0	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-1376322_65	1226322.HMPREF1545_03848	285.0	0	N/A	N/A
Pfam	UHGV-1376322_65	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-1376322_65	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1376322_66	phrog_156	227.6	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1376322_66	693746.OBV_23930	462.0	0	N/A	N/A
structural_annotation	UHGV-1376322_66	PF12236,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-1376322_67	phrog_13046	42.9	0.0000000000017	N/A	unknown function
eggNOG-mapper	UHGV-1376322_67	693746.OBV_23880	104.0	2.89e-25	N/A	N/A
structural_annotation	UHGV-1376322_67	PF20387	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1376322_68	665956.HMPREF1032_03918	113.0	1.11e-25	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A
PHROG	UHGV-1376322_69	phrog_15594	83.4	1.9e-24	N/A	unknown function
eggNOG-mapper	UHGV-1376322_69	1118055.CAGU01000013_gene763	65.9	0.00000000000115	N/A	N/A
structural_annotation	UHGV-1376322_69	PF16640,TIGR04488	N/A	N/A	N/A	N/A