UHGV-1376462 (vOTU-003075)

Viral Genome: UHGV-1376462

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1376462
vOTU ID	vOTU-003075
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0294325
Associated BioSample	SAMEA2737707
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9794
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.72
Jumbo phage	No

Genome content
Genome length (bp)	45,135
GC content	54.43%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	71
CDS density	90%
Average CDS length (bps)	571.65
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1376462_1	K07741	220.0	0	antB; anti-repressor protein	N/A
PHROG	UHGV-1376462_1	phrog_63	184.2	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1376462_1	UniRef90_A0A7I8D1Y4	332.0	0	Putative P1-type antirepressor - phage associated	N/A
eggNOG-mapper	UHGV-1376462_1	1232443.BAIA02000079_gene53	327.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-1376462_1	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-1376462_1	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1376462_1	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1376462_1	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
UniRef90	UHGV-1376462_3	UniRef90_A0A417HS32	121.0	4.2e-33	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1376462_3	33035.JPJF01000055_gene1671	67.8	0.000000000000526	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1376462_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1376462_3	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1376462_3	PF13560,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1376462_4	UniRef90_A0A329UG74	76.3	7.1e-17	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1376462_4	1051631.F8HGP8_9CAUD	55.5	0.00000000188	N/A	N/A
structural_annotation	UHGV-1376462_4	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1376462_10	COG3311	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1376462_13	596152.DesU5LDRAFT_1910	75.1	0.0000000000000767	N/A	N/A
structural_annotation	UHGV-1376462_13	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-1376462_16	phrog_7838	139.1	3.09995e-41	exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1376462_16	742767.HMPREF9456_02052	174.0	0	N/A	N/A
PHROG	UHGV-1376462_17	phrog_72	51.5	0.000000000000015	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376462_17	UniRef90_UPI001F3F3E5C	114.0	6.16e-29	recombination protein NinB	N/A
eggNOG-mapper	UHGV-1376462_17	445972.ANACOL_01825	137.0	1.06e-38	N/A	N/A
structural_annotation	UHGV-1376462_17	PF05772	N/A	N/A	N/A	N/A
KOfam	UHGV-1376462_19	K07451	46.4	0.0000000000008	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1376462_19	phrog_7370	59.2	7.4e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376462_19	UniRef90_A0A845MWL0	195.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-1376462_19	1232449.BAHV02000016_gene1841	77.0	5.29e-17	HNH nucleases	N/A
Pfam	UHGV-1376462_19	PF01844	N/A	N/A	HNH endonuclease	HNH
KOfam	UHGV-1376462_20	K03111	120.1	3.1e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1376462_20	phrog_44	127.8	9e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376462_20	UniRef90_A0A417H728	198.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1376462_20	1203606.HMPREF1526_02270	118.0	4.5e-32	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1376462_20	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1376462_20	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1376462_20	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1376462_20	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1376462_20	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1376462_21	phrog_2514	94.5	8.2e-28	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376462_21	UniRef90_A0A2A6ZGI2	82.8	0.00000000000000305	HTH gntR-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1376462_21	397291.C804_01603	118.0	1.5e-29	DnaD domain protein	N/A
COG	UHGV-1376462_21	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1376462_21	PF10771,MF_01177,TIGR01610,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-1376462_23	K01160	46.2	0.0000000000013	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1376462_23	phrog_1682	84.1	2e-24	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376462_23	UniRef90_A0A417H6W1	208.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1376462_23	697281.Mahau_0558	130.0	1.98e-37	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-1376462_23	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1376462_23	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1376462_24	K00571	119.5	3.7e-35	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1376462_24	phrog_67	104.5	5.6e-31	DNA methyltransferase	other
UniRef90	UHGV-1376462_24	UniRef90_A0A2U1CFM2	417.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1376462_24	35241.Q9XJE8_BPTU2	362.0	0	helicase activity	N/A
PADLOC	UHGV-1376462_24	MTase_II_00157	94.8	1.7e-27	Type II methyltransferase	RM
Pfam	UHGV-1376462_24	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
structural_annotation	UHGV-1376462_24	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1376462_25	phrog_3136	127.0	7.9e-38	N/A	unknown function
UniRef90	UHGV-1376462_25	UniRef90_UPI001CBCD733	110.0	4.08e-27	ASCH domain-containing protein	N/A
Pfam	UHGV-1376462_25	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-1376462_25	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1376462_25	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1376462_26	phrog_9958	93.1	2.7e-27	N/A	unknown function
eggNOG-mapper	UHGV-1376462_26	658655.HMPREF0988_00873	56.2	0.00000048	N/A	N/A
structural_annotation	UHGV-1376462_26	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-1376462_27	phrog_22543	48.4	0.0000000000001	N/A	unknown function
UniRef90	UHGV-1376462_27	UniRef90_A0A8D9PDT5	64.7	0.0000000000218	Hydrogenase/urease nickel incorporation protein	N/A
UniRef90	UHGV-1376462_28	UniRef90_UPI00082EBC63	60.8	0.00000000104	Lar family restriction alleviation protein	N/A
PHROG	UHGV-1376462_29	phrog_16244	45.1	0.0000000000018	N/A	unknown function
PHROG	UHGV-1376462_30	phrog_599	41.0	0.000000000037	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-1376462_30	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-1376462_30	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-1376462_30	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1376462_31	phrog_599	44.4	0.0000000000036	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1376462_31	UniRef90_A0A3A6JJS1	124.0	1.16e-35	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-1376462_31	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1376462_31	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-1376462_31	TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1376462_33	phrog_474	107.4	2.2e-31	phosphofructokinase	other
UniRef90	UHGV-1376462_33	UniRef90_A0A2V2FHD6	160.0	0	N/A	N/A
eggNOG-mapper	UHGV-1376462_33	428125.CLOLEP_01367	98.2	2.5e-24	N/A	N/A
Pfam	UHGV-1376462_33	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-1376462_33	PF19905	N/A	N/A	N/A	N/A
PHROG	UHGV-1376462_34	phrog_419	113.9	1.6e-33	N/A	unknown function
UniRef90	UHGV-1376462_34	UniRef90_A0A060QMU0	100.0	7.19e-26	N/A	N/A
eggNOG-mapper	UHGV-1376462_34	1123312.KB904569_gene346	105.0	8.63e-29	N/A	N/A
structural_annotation	UHGV-1376462_34	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-1376462_36	phrog_774	43.2	0.000000000008	N/A	unknown function
PHROG	UHGV-1376462_38	phrog_478	128.7	2.4e-38	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-1376462_38	UniRef90_R6R5K5	150.0	1.96182e-44	Protein 64 protein	N/A
eggNOG-mapper	UHGV-1376462_38	478749.BRYFOR_08526	145.0	3.08286e-43	N/A	N/A
PHROG	UHGV-1376462_39	phrog_36	60.3	4.1e-17	transcriptional regulator	transcription regulation
COG	UHGV-1376462_39	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1376462_39	PF07374,TIGR01636	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1376462_42	PF17917	N/A	N/A	N/A	N/A
PHROG	UHGV-1376462_43	phrog_15863	158.4	0	N/A	unknown function
UniRef90	UHGV-1376462_43	UniRef90_A0A417HVZ9	333.0	0	J domain-containing protein	N/A
eggNOG-mapper	UHGV-1376462_43	693746.OBV_01780	160.0	0	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-1376462_43	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
structural_annotation	UHGV-1376462_44	PF03869,NF010256	N/A	N/A	N/A	N/A
PHROG	UHGV-1376462_45	phrog_51	47.4	0.00000000000025	terminase small subunit	head and packaging
UniRef90	UHGV-1376462_45	UniRef90_A0A2V2FED9	147.0	1.31722e-43	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1376462_45	1123405.AUMM01000017_gene2713	96.7	3.64e-24	Terminase, small subunit	N/A
Pfam	UHGV-1376462_45	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1376462_45	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1376462_45	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-1376462_46	K06909	101.0	1.6e-29	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1376462_46	phrog_979	176.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-1376462_46	UniRef90_UPI00164BD94B	504.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1376462_46	1408437.JNJN01000002_gene1397	466.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1376462_46	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1376462_46	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1376462_46	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1376462_47	phrog_156	252.2	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1376462_47	1519439.JPJG01000060_gene1886	538.0	0	N/A	N/A
structural_annotation	UHGV-1376462_47	PF16510,MF_04120,TIGR01542,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1376462_50	phrog_35275	87.1	2.1e-25	N/A	unknown function
eggNOG-mapper	UHGV-1376462_50	693746.OBV_23910	105.0	6.57e-24	N/A	N/A
PHROG	UHGV-1376462_51	phrog_24113	56.2	4.6e-16	N/A	unknown function
eggNOG-mapper	UHGV-1376462_51	1226322.HMPREF1545_03847	52.8	0.000000811	N/A	N/A
structural_annotation	UHGV-1376462_51	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-1376462_52	phrog_371	86.0	3.1e-25	major head protein	head and packaging
UniRef90	UHGV-1376462_52	UniRef90_UPI00164C0E21	378.0	0	Mu-like prophage major head subunit gpT family protein	N/A
eggNOG-mapper	UHGV-1376462_52	1226322.HMPREF1545_03848	219.0	0	N/A	N/A
structural_annotation	UHGV-1376462_52	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1376462_53	phrog_13046	56.4	2.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-1376462_53	693746.OBV_23880	89.0	4.54e-19	N/A	N/A
structural_annotation	UHGV-1376462_53	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-1376462_54	phrog_3287	126.3	3.7e-38	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1376462_54	1232449.BAHV02000016_gene1816	416.0	0	N/A	N/A
structural_annotation	UHGV-1376462_54	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
KOfam	UHGV-1376462_55	K16617	73.5	1.2e-21	COL13A; collagen type XIII alpha	N/A
PHROG	UHGV-1376462_55	phrog_819	123.4	2e-36	tail protein	tail
eggNOG-mapper	UHGV-1376462_55	1408437.JNJN01000030_gene1051	95.1	1.02e-18	cellulose 1,4-beta-cellobiosidase activity	N/A
Pfam	UHGV-1376462_55	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1376462_55	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-1376462_56	phrog_24451	63.3	3.5e-18	N/A	unknown function
eggNOG-mapper	UHGV-1376462_56	1408437.JNJN01000040_gene189	110.0	3.51e-29	N/A	N/A
PHROG	UHGV-1376462_57	phrog_1382	48.2	0.000000000000093	N/A	unknown function
eggNOG-mapper	UHGV-1376462_57	743719.PaelaDRAFT_2420	51.6	0.0000000291	N/A	N/A
PHROG	UHGV-1376462_59	phrog_199	65.5	7.2e-19	holin	lysis
UniRef90	UHGV-1376462_59	UniRef90_A0A3E2XXQ8	216.0	0	Holin	N/A
eggNOG-mapper	UHGV-1376462_59	742738.HMPREF9460_00365	139.0	3.05e-40	Bacteriophage holin family	N/A
Pfam	UHGV-1376462_59	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1376462_59	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1376462_59	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1376462_59	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1376462_60	K01447	118.8	6.9e-35	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1376462_60	phrog_670	148.7	5.1848e-44	endolysin	lysis
UniRef90	UHGV-1376462_60	UniRef90_A0A2V2FIF5	414.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1376462_60	1408437.JNJN01000008_gene890	231.0	0	Ami_2	N/A
Pfam	UHGV-1376462_60	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1376462_60	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1376462_60	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
UniRef90	UHGV-1376462_61	UniRef90_UPI0004E194C7	78.2	1.03e-17	LuxR C-terminal-related transcriptional regulator	N/A
Pfam	UHGV-1376462_61	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
structural_annotation	UHGV-1376462_61	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1376462_63	1408437.JNJN01000043_gene805	128.0	5.95e-37	N/A	N/A
eggNOG-mapper	UHGV-1376462_64	476272.RUMHYD_01953	55.5	0.00000000333	N/A	N/A
PHROG	UHGV-1376462_65	phrog_16490	71.9	1.9e-35	N/A	unknown function
eggNOG-mapper	UHGV-1376462_65	1408437.JNJN01000043_gene803	109.0	3.77e-26	N/A	N/A
eggNOG-mapper	UHGV-1376462_66	1408437.JNJN01000043_gene802	113.0	8.38e-31	N/A	N/A
UniRef90	UHGV-1376462_67	UniRef90_A0A7M1RTM1	79.0	0.0000000000000132	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1376462_67	1408437.JNJN01000043_gene801	135.0	5.4e-37	N/A	N/A
KOfam	UHGV-1376462_69	K19304	125.8	5.2e-37	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-1376462_69	phrog_6700	81.9	1.4e-24	endolysin	lysis
UniRef90	UHGV-1376462_69	UniRef90_A0A417HW04	2757.0	0	M23 family peptidase	N/A
eggNOG-mapper	UHGV-1376462_69	1408437.JNJN01000060_gene452	1424.0	0	heme binding	N/A
Pfam	UHGV-1376462_69	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-1376462_69	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
KOfam	UHGV-1376462_70	K14059	185.8	0	int; integrase	N/A
PHROG	UHGV-1376462_70	phrog_1	200.2	0	integrase	integration and excision
UniRef90	UHGV-1376462_70	UniRef90_A0A845MUP0	569.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1376462_70	1321814.HMPREF9089_00905	207.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1376462_70	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1376462_70	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1376462_70	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1376462_70	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
COG	UHGV-1376462_71	COG4632	N/A	N/A	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	N/A