UHGV-1376600 (vOTU-057892)

Viral Genome: UHGV-1376600

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1376600
vOTU ID	vOTU-057892
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0290998
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9823
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.65
Jumbo phage	No

Genome content
Genome length (bp)	44,408
GC content	40.89%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	69
CDS density	91%
Average CDS length (bps)	584.61
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1376600_1	476272.RUMHYD_01785	51.2	0.000000524	phage tail tape measure protein	N/A
COG	UHGV-1376600_1	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-1376600_2	phrog_706	135.2	4.6e-40	N/A	unknown function
UniRef90	UHGV-1376600_2	UniRef90_UPI001BAD00AD	212.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1376600_2	411459.RUMOBE_01383	352.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1376600_2	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1376600_2	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1376600_3	phrog_11299	72.4	7e-21	N/A	unknown function
eggNOG-mapper	UHGV-1376600_3	33035.JPJF01000106_gene3125	63.5	0.0000000000758	N/A	N/A
structural_annotation	UHGV-1376600_3	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1376600_4	phrog_3099	131.6	5.1e-39	N/A	unknown function
eggNOG-mapper	UHGV-1376600_4	411902.CLOBOL_00129	169.0	0	N/A	N/A
structural_annotation	UHGV-1376600_4	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1376600_5	phrog_3266	91.0	1.1e-26	tail completion	connector
eggNOG-mapper	UHGV-1376600_5	476272.RUMHYD_01781	149.0	8.96831e-44	N/A	N/A
structural_annotation	UHGV-1376600_5	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1376600_6	phrog_556	49.7	0.0000000000000025	minor head protein	head and packaging
UniRef90	UHGV-1376600_6	UniRef90_UPI000E4989EB	281.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1376600_6	476272.RUMHYD_01780	149.0	8.26766e-44	N/A	N/A
structural_annotation	UHGV-1376600_6	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1376600_7	phrog_3366	97.9	9.5e-29	N/A	unknown function
eggNOG-mapper	UHGV-1376600_7	476272.RUMHYD_01779	150.0	1.96182e-44	N/A	N/A
structural_annotation	UHGV-1376600_7	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1376600_8	phrog_1129	75.7	4.4e-22	holin	lysis
UniRef90	UHGV-1376600_8	UniRef90_A0A395X7B2	173.0	0	Enolase	N/A
eggNOG-mapper	UHGV-1376600_8	411461.DORFOR_00721	114.0	2.51e-32	N/A	N/A
Pfam	UHGV-1376600_8	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1376600_8	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1376600_10	phrog_541	93.8	9.4e-28	head-tail adaptor	connector
eggNOG-mapper	UHGV-1376600_10	476272.RUMHYD_01778	97.8	1.28e-23	N/A	N/A
PHROG	UHGV-1376600_11	phrog_544	165.0	0	major head protein	head and packaging
UniRef90	UHGV-1376600_11	UniRef90_A0A395X7A1	730.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1376600_11	1232453.BAIF02000011_gene3359	384.0	0	N/A	N/A
Pfam	UHGV-1376600_11	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-1376600_11	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1376600_12	phrog_194	64.2	2.8e-18	head scaffolding protein	head and packaging
UniRef90	UHGV-1376600_12	UniRef90_UPI001D14C9C8	177.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1376600_12	476272.RUMHYD_01775	181.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1376600_12	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-1376600_13	phrog_28802	224.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1376600_13	476272.RUMHYD_01772	199.0	0	N/A	N/A
PHROG	UHGV-1376600_14	phrog_20016	204.5	0	N/A	unknown function
UniRef90	UHGV-1376600_14	UniRef90_A0A285PT46	170.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1376600_14	397290.C810_05214	188.0	0	N/A	N/A
structural_annotation	UHGV-1376600_14	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1376600_15	phrog_16490	183.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1376600_15	397290.C810_01328	189.0	0	N/A	N/A
PHROG	UHGV-1376600_16	phrog_22984	96.5	1.6e-28	N/A	unknown function
PHROG	UHGV-1376600_17	phrog_21718	134.4	5e-40	N/A	unknown function
eggNOG-mapper	UHGV-1376600_17	476272.RUMHYD_01768	128.0	6.45e-36	N/A	N/A
UniRef90	UHGV-1376600_18	UniRef90_A0A395X7A4	187.0	0	CTP synthase	N/A
eggNOG-mapper	UHGV-1376600_18	476272.RUMHYD_01766	121.0	1.52e-34	N/A	N/A
PHROG	UHGV-1376600_19	phrog_3754	117.1	1.2e-34	N/A	unknown function
eggNOG-mapper	UHGV-1376600_19	476272.RUMHYD_01764	180.0	0	N/A	N/A
PHROG	UHGV-1376600_20	phrog_581	252.4	0	minor head protein	head and packaging
UniRef90	UHGV-1376600_20	UniRef90_A0A395X791	705.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1376600_20	33035.JPJF01000106_gene3134	385.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1376600_20	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1376600_20	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1376600_20	PF06152	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1376600_22	556261.HMPREF0240_03316	139.0	1.75e-35	GDSL-like Lipase/Acylhydrolase	N/A
structural_annotation	UHGV-1376600_22	PF16443,NF007819,COG2845	N/A	N/A	N/A	N/A
PHROG	UHGV-1376600_23	phrog_533	286.7	0	portal protein	head and packaging
UniRef90	UHGV-1376600_23	UniRef90_A0A1C6CDM8	696.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1376600_23	33035.JPJF01000106_gene3135	527.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-1376600_23	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1376600_25	K06909	379.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1376600_25	phrog_3717	145.9	2.10195e-43	terminase large subunit	head and packaging
UniRef90	UHGV-1376600_25	UniRef90_A0A6L8SYJ6	967.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1376600_25	33035.JPJF01000106_gene3136	530.0	0	Terminase small subunit	N/A
Pfam	UHGV-1376600_25	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1376600_25	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1376600_25	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1376600_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1376600_25	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1376600_26	TIGR04116	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1376600_28	397288.C806_00098	57.8	0.0000000155	N/A	N/A
KOfam	UHGV-1376600_33	K00571	101.4	1.2e-29	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1376600_33	phrog_23224	237.4	0	DNA methyltransferase	other
UniRef90	UHGV-1376600_33	UniRef90_A0A3A6GQN4	446.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1376600_33	1214217.ALNF01000014_gene1390	260.0	0	N-4 methylation of cytosine	N/A
PADLOC	UHGV-1376600_33	MTase_II_00172	88.5	1.4e-27	Type II methyltransferase	RM
Pfam	UHGV-1376600_33	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1376600_33	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1376600_33	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1376600_34	phrog_8684	106.3	2.4e-31	N/A	unknown function
UniRef90	UHGV-1376600_34	UniRef90_A0A395X9H4	242.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1376600_34	457412.RSAG_01162	210.0	0	YopX protein	N/A
Pfam	UHGV-1376600_34	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-1376600_34	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-1376600_36	phrog_20593	58.5	5.5e-17	N/A	unknown function
eggNOG-mapper	UHGV-1376600_37	476272.RUMHYD_01751	49.3	0.00000322	N/A	N/A
AcrCatalog	UHGV-1376600_37	cluster_11670	44.3	0.0000000111	NA	N/A
PHROG	UHGV-1376600_38	phrog_4601	44.5	0.0000000000027	N/A	unknown function
structural_annotation	UHGV-1376600_38	PF17888	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1376600_39	NF041070	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1376600_40	PF18350,TIGR00739,COG1862	N/A	N/A	N/A	N/A
UniRef90	UHGV-1376600_42	UniRef90_A0A412ELN5	172.0	0	LexA_DNA_bind domain-containing protein	N/A
Pfam	UHGV-1376600_42	PF01726	N/A	N/A	LexA DNA binding domain	LexA_DNA_bind
COG	UHGV-1376600_42	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1376600_42	PF01726,COG0640	N/A	N/A	N/A	N/A
PHROG	UHGV-1376600_44	phrog_8841	555.7	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376600_44	UniRef90_A0A412EL97	1219.0	0	N/A	N/A
eggNOG-mapper	UHGV-1376600_44	476272.RUMHYD_01742	769.0	0	N/A	N/A
Pfam	UHGV-1376600_44	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-1376600_44	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-1376600_44	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1376600_44	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-1376600_45	K02316	67.5	2.2e-19	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-1376600_45	phrog_11992	155.4	0	N/A	unknown function
UniRef90	UHGV-1376600_45	UniRef90_A0A412EM56	312.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-1376600_45	476272.RUMHYD_01741	184.0	0	CHC2 zinc finger	N/A
PADLOC	UHGV-1376600_45	drt-UG29	54.6	0.0000000000000011	DRT	DRT
Pfam	UHGV-1376600_45	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-1376600_45	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-1376600_45	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-1376600_46	phrog_3490	157.3	0	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376600_46	UniRef90_R9KEE1	260.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1376600_46	1256908.HMPREF0373_00660	264.0	0	N/A	N/A
Pfam	UHGV-1376600_46	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-1376600_46	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-1376600_47	phrog_18107	247.6	0	N/A	unknown function
eggNOG-mapper	UHGV-1376600_47	1256908.HMPREF0373_00659	232.0	0	N/A	N/A
structural_annotation	UHGV-1376600_47	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1376600_48	phrog_2872	243.0	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376600_48	UniRef90_UPI0015715A02	391.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1376600_48	1256908.HMPREF0373_00658	343.0	0	AAA domain	N/A
Pfam	UHGV-1376600_48	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1376600_48	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
UniRef90	UHGV-1376600_49	UniRef90_R6RDX0	79.7	2.61e-18	Arginyl-tRNA synthetase	N/A
UniRef90	UHGV-1376600_50	UniRef90_A0A6N9LIC6	79.7	3.12e-18	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1376600_50	411459.RUMOBE_01375	78.2	2.13e-18	N/A	N/A
Pfam	UHGV-1376600_50	PF20063	N/A	N/A	N/A	DUF6462
structural_annotation	UHGV-1376600_51	NF001645	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1376600_53	PF10922,TIGR03741	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-1376600_54	cluster_17974	52.8	0.000000000000841	NA	N/A
PHROG	UHGV-1376600_56	phrog_478	121.8	3.3e-36	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-1376600_56	UniRef90_A0A373Q857	119.0	1.34e-31	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1376600_56	1111121.HMPREF1247_0834	103.0	1.1e-26	N/A	N/A
KOfam	UHGV-1376600_58	K22300	44.5	0.0000000000031	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-1376600_58	UniRef90_A0A412ELD4	137.0	4.85998e-41	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1376600_58	1235801.C822_00106	57.8	0.000000000208	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-1376600_58	retron_type_VI_hth_cluster2_1	40.5	0.000000000076	N/A	Retron
Pfam	UHGV-1376600_58	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1376600_58	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1376600_58	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1376600_59	phrog_2967	58.4	1.5e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1376600_59	UniRef90_A0A416SLU4	248.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1376600_59	476272.RUMHYD_03305	79.0	2.83e-16	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-1376600_59	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1376600_59	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1376600_59	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1376600_62	K11641	130.5	1.2e-38	natR; two-component system, LytTR family, response regulator NatR	N/A
PHROG	UHGV-1376600_62	phrog_8810	119.4	3.3e-35	N/A	unknown function
UniRef90	UHGV-1376600_62	UniRef90_A0A395X907	471.0	0	Stage 0 sporulation protein A homolog	N/A
eggNOG-mapper	UHGV-1376600_62	742740.HMPREF9474_03223	140.0	2.6e-38	LytTr DNA-binding domain	N/A
Pfam	UHGV-1376600_62	PF00072	N/A	N/A	Response regulator receiver domain	Response_reg
Pfam	UHGV-1376600_62	PF04397	N/A	N/A	LytTr DNA-binding domain	LytTR
COG	UHGV-1376600_62	COG3279	N/A	N/A	DNA-binding response regulator, LytR/AlgR family	N/A
structural_annotation	UHGV-1376600_62	PF04397,PF00072,MF_00981,NF010684,COG3279	N/A	N/A	N/A	N/A
PHROG	UHGV-1376600_63	phrog_4431	81.4	7.7e-24	N/A	unknown function
UniRef90	UHGV-1376600_63	UniRef90_A0A412ELU3	421.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-1376600_63	1449343.JQLQ01000002_gene1561	62.4	0.0000000128	N/A	N/A
Pfam	UHGV-1376600_63	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
KOfam	UHGV-1376600_64	K06400	285.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1376600_64	phrog_95	315.5	0	integrase	integration and excision
UniRef90	UHGV-1376600_64	UniRef90_A0A412ELC2	1038.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1376600_64	33035.JPJF01000109_gene439	660.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1376600_64	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1376600_64	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1376600_64	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1376600_64	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1376600_64	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-1376600_65	K07273	213.7	0	acm; lysozyme	N/A
PHROG	UHGV-1376600_65	phrog_291	162.6	0	endolysin	lysis
UniRef90	UHGV-1376600_65	UniRef90_A0A1C5RZF8	882.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-1376600_65	476272.RUMHYD_02876	268.0	0	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	N/A
Pfam	UHGV-1376600_65	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1376600_65	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-1376600_65	PF01183,PF18342,PF14603,NF040678,TIGR04303,COG3757,COG3807	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1376600_66	PF20986	N/A	N/A	N/A	N/A
PHROG	UHGV-1376600_67	phrog_6616	502.1	0	tail protein	tail
UniRef90	UHGV-1376600_67	UniRef90_A0A395X7B3	1561.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1376600_67	33035.JPJF01000043_gene1002	237.0	0	N/A	N/A
structural_annotation	UHGV-1376600_67	PF05113,PF03921,PF13884,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1376600_68	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1376600_69	phrog_1535	444.0	0	tail length tape measure protein	tail
UniRef90	UHGV-1376600_69	UniRef90_A0A173R880	471.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1376600_69	476272.RUMHYD_01785	472.0	0	phage tail tape measure protein	N/A
COG	UHGV-1376600_69	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1376600_69	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A