UHGV-1376607 (vOTU-057893)

Viral Genome: UHGV-1376607

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1376607
vOTU ID	vOTU-057893
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0290958
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9825
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.42
Jumbo phage	No

Genome content
Genome length (bp)	44,379
GC content	41.41%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	70
CDS density	92%
Average CDS length (bps)	581.87
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1376607_1	phrog_6616	94.8	7.1e-28	tail protein	tail
eggNOG-mapper	UHGV-1376607_1	1235798.C817_02568	138.0	4.65e-35	Prophage endopeptidase tail	N/A
COG	UHGV-1376607_1	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
PHROG	UHGV-1376607_2	phrog_18444	74.7	8.8e-22	N/A	unknown function
UniRef90	UHGV-1376607_2	UniRef90_UPI00156E9A45	72.8	0.00000000000000137	peptide chain release factor 2	N/A
UniRef90	UHGV-1376607_3	UniRef90_UPI001C0EBDDC	159.0	0	pyocin knob domain-containing protein	N/A
KOfam	UHGV-1376607_4	K07273	206.2	0	acm; lysozyme	N/A
PHROG	UHGV-1376607_4	phrog_6745	190.0	0	endolysin	lysis
UniRef90	UHGV-1376607_4	UniRef90_A0A6L8SXR6	883.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-1376607_4	457412.RSAG_00790	672.0	0	CHAP domain	N/A
Pfam	UHGV-1376607_4	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1376607_4	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-1376607_4	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1376607_4	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-1376607_4	PF01183,TIGR02594,TIGR04303,COG3757,COG3942	N/A	N/A	N/A	N/A
KOfam	UHGV-1376607_5	K14059	99.7	4.6e-29	int; integrase	N/A
PHROG	UHGV-1376607_5	phrog_1	130.2	2.2e-38	integrase	integration and excision
UniRef90	UHGV-1376607_5	UniRef90_A0A6L8SXX0	782.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1376607_5	1235792.C808_05256	359.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1376607_5	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1376607_5	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1376607_5	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1376607_6	phrog_8545	70.6	2.3e-20	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1376607_6	UniRef90_UPI001C0EAFDF	225.0	0	OB-fold putative lipoprotein	N/A
eggNOG-mapper	UHGV-1376607_6	1304866.K413DRAFT_0836	156.0	0	tRNA_anti-like	N/A
Pfam	UHGV-1376607_6	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
structural_annotation	UHGV-1376607_6	PF12869,PF10571,MF_01959,TIGR03943,COG5235	N/A	N/A	N/A	N/A
KOfam	UHGV-1376607_8	K22300	73.1	5.8e-21	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1376607_8	phrog_8	70.5	3.6e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-1376607_8	UniRef90_A0A395X7H2	218.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1376607_8	397288.C806_00131	100.0	2.44e-25	Transcriptional	N/A
PADLOC	UHGV-1376607_8	retron_type_VI_hth_cluster2_1	43.4	0.000000000004	N/A	Retron
Pfam	UHGV-1376607_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1376607_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1376607_8	PF01381,MF_02017,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1376607_9	UniRef90_A0A395X814	140.0	1.8301e-42	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1376607_9	1121289.JHVL01000079_gene1187	60.1	0.0000000000349	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1376607_9	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1376607_9	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1376607_11	phrog_6058	57.0	1.2e-16	N/A	unknown function
UniRef90	UHGV-1376607_11	UniRef90_A0A2V1JQ38	63.5	0.000000000125	Glycogen synthase	N/A
eggNOG-mapper	UHGV-1376607_11	742733.HMPREF9469_05094	58.9	0.0000000013	N/A	N/A
AcrCatalog	UHGV-1376607_12	cluster_17974	59.7	0.00000000000000134	NA	N/A
structural_annotation	UHGV-1376607_16	NF001645	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1376607_17	1235798.C817_05064	62.4	0.00000000000346	N/A	N/A
UniRef90	UHGV-1376607_18	UniRef90_R6RDX0	77.8	1.51e-17	Arginyl-tRNA synthetase	N/A
PHROG	UHGV-1376607_19	phrog_2872	164.6	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376607_19	UniRef90_A0A8F2J9K2	293.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1376607_19	1304866.K413DRAFT_0827	220.0	0	AAA domain	N/A
Pfam	UHGV-1376607_19	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1376607_19	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1376607_21	phrog_18107	125.0	6.2e-37	N/A	unknown function
eggNOG-mapper	UHGV-1376607_21	476272.RUMHYD_02831	192.0	0	N/A	N/A
structural_annotation	UHGV-1376607_21	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1376607_22	phrog_3490	111.0	1e-32	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376607_22	UniRef90_A0A173R9N6	285.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1376607_22	476272.RUMHYD_02832	285.0	0	ERCC4 domain	N/A
Pfam	UHGV-1376607_22	PF02732	N/A	N/A	ERCC4 domain	ERCC4
COG	UHGV-1376607_22	COG1948	N/A	N/A	ERCC4-type crossover junction endonuclease	N/A
structural_annotation	UHGV-1376607_22	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-1376607_24	phrog_1313	380.5	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376607_24	UniRef90_UPI001655DAE1	703.0	0	bifunctional DNA primase/polymerase	N/A
eggNOG-mapper	UHGV-1376607_24	500632.CLONEX_03568	306.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-1376607_24	PF09250	N/A	N/A	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
Pfam	UHGV-1376607_24	PF08708	N/A	N/A	Primase C terminal 1 (PriCT-1)	PriCT_1
Pfam	UHGV-1376607_24	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-1376607_24	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-1376607_24	PF05272,PF09250,PF08708,MF_00016,NF011296,COG5545	N/A	N/A	N/A	N/A
UniRef90	UHGV-1376607_26	UniRef90_A0A6L8SWV5	167.0	0	Winged helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-1376607_26	PF01726,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-1376607_29	K00558	241.4	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1376607_29	phrog_116	268.6	0	DNA methyltransferase	other
UniRef90	UHGV-1376607_29	UniRef90_C0BC27	857.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1376607_29	1499683.CCFF01000017_gene2594	470.0	0	PFAM C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1376607_29	MTase_II_00058	207.9	0	Type II methyltransferase	RM
Pfam	UHGV-1376607_29	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1376607_29	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1376607_29	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1376607_29	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1376607_30	NF041070	N/A	N/A	N/A	N/A
PHROG	UHGV-1376607_31	phrog_599	40.2	0.000000000069	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1376607_31	UniRef90_UPI001C0F2DCC	137.0	8.14995e-41	Lar family restriction alleviation protein	N/A
Pfam	UHGV-1376607_31	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
PHROG	UHGV-1376607_32	phrog_4601	42.9	0.0000000000084	N/A	unknown function
AcrCatalog	UHGV-1376607_33	cluster_11670	43.5	0.0000000238	NA	N/A
PHROG	UHGV-1376607_35	phrog_20593	55.8	6.4e-16	N/A	unknown function
structural_annotation	UHGV-1376607_35	PF07870,TIGR02501	N/A	N/A	N/A	N/A
PHROG	UHGV-1376607_36	phrog_8684	88.7	3.4e-26	N/A	unknown function
UniRef90	UHGV-1376607_36	UniRef90_A0A3A6GQT2	192.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1376607_36	457412.RSAG_01162	92.4	7.75e-22	YopX protein	N/A
Pfam	UHGV-1376607_36	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1376607_36	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1376607_36	PF09643,TIGR01671	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1376607_37	PF06107,COG4481	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1376607_39	1235793.C809_02210	99.4	3.95e-24	N/A	N/A
structural_annotation	UHGV-1376607_39	PF11302	N/A	N/A	N/A	N/A
KOfam	UHGV-1376607_42	K06909	413.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1376607_42	phrog_3717	171.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-1376607_42	UniRef90_A0A1C6CDG5	790.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-1376607_42	33035.JPJF01000106_gene3136	694.0	0	Terminase small subunit	N/A
Pfam	UHGV-1376607_42	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-1376607_42	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1376607_42	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1376607_42	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1376607_42	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1376607_42	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1376607_44	phrog_533	279.6	0	portal protein	head and packaging
UniRef90	UHGV-1376607_44	UniRef90_A0A1C6CDM8	702.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1376607_44	33035.JPJF01000106_gene3135	533.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-1376607_44	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1376607_45	476272.RUMHYD_00002	101.0	4.07e-20	N/A	N/A
PHROG	UHGV-1376607_47	phrog_581	262.5	0	minor head protein	head and packaging
UniRef90	UHGV-1376607_47	UniRef90_A0A412EKN3	748.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1376607_47	33035.JPJF01000106_gene3134	313.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1376607_47	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1376607_47	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1376607_47	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1376607_48	phrog_3754	115.3	4.2e-34	N/A	unknown function
eggNOG-mapper	UHGV-1376607_48	476272.RUMHYD_01764	174.0	0	N/A	N/A
UniRef90	UHGV-1376607_49	UniRef90_A0A395X7A4	181.0	0	CTP synthase	N/A
eggNOG-mapper	UHGV-1376607_49	476272.RUMHYD_01766	121.0	1.52e-34	N/A	N/A
PHROG	UHGV-1376607_50	phrog_21718	132.1	2.6e-39	N/A	unknown function
eggNOG-mapper	UHGV-1376607_50	476272.RUMHYD_01768	128.0	9.14e-36	N/A	N/A
PHROG	UHGV-1376607_51	phrog_22984	95.8	2.6e-28	N/A	unknown function
PHROG	UHGV-1376607_52	phrog_16490	194.8	0	N/A	unknown function
eggNOG-mapper	UHGV-1376607_52	397290.C810_01328	172.0	0	N/A	N/A
PHROG	UHGV-1376607_53	phrog_20016	203.9	0	N/A	unknown function
UniRef90	UHGV-1376607_53	UniRef90_A0A285PT46	167.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1376607_53	397290.C810_05214	189.0	0	N/A	N/A
structural_annotation	UHGV-1376607_53	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1376607_54	phrog_28802	224.6	0	N/A	unknown function
eggNOG-mapper	UHGV-1376607_54	476272.RUMHYD_01772	199.0	0	N/A	N/A
PHROG	UHGV-1376607_55	phrog_194	66.9	4.1e-19	head scaffolding protein	head and packaging
UniRef90	UHGV-1376607_55	UniRef90_UPI001D14C9C8	186.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1376607_55	476272.RUMHYD_01775	193.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1376607_55	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-1376607_56	phrog_544	161.1	0	major head protein	head and packaging
UniRef90	UHGV-1376607_56	UniRef90_A0A395X7A1	665.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1376607_56	1232453.BAIF02000011_gene3359	383.0	0	N/A	N/A
Pfam	UHGV-1376607_56	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-1376607_56	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1376607_57	phrog_541	95.1	5.3e-28	head-tail adaptor	connector
eggNOG-mapper	UHGV-1376607_57	476272.RUMHYD_01778	108.0	1.17e-27	N/A	N/A
PHROG	UHGV-1376607_58	phrog_1233	97.4	1.7e-28	N/A	unknown function
eggNOG-mapper	UHGV-1376607_58	33035.JPJF01000106_gene3130	104.0	2.74e-27	N/A	N/A
PHROG	UHGV-1376607_60	phrog_774	68.0	1.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-1376607_60	397290.C810_05225	142.0	2.56438e-43	N/A	N/A
PHROG	UHGV-1376607_61	phrog_18218	131.5	2.6e-39	N/A	unknown function
UniRef90	UHGV-1376607_61	UniRef90_A0A8D9PGR5	142.0	7.19987e-42	Holin	N/A
eggNOG-mapper	UHGV-1376607_61	411902.CLOBOL_03424	82.4	6.76e-19	N/A	N/A
structural_annotation	UHGV-1376607_61	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1376607_62	phrog_3366	94.1	1.4e-27	N/A	unknown function
eggNOG-mapper	UHGV-1376607_62	476272.RUMHYD_01779	152.0	2.8026e-45	N/A	N/A
structural_annotation	UHGV-1376607_62	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1376607_63	phrog_556	66.6	3.1e-19	minor head protein	head and packaging
UniRef90	UHGV-1376607_63	UniRef90_UPI000E4989EB	296.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1376607_63	476272.RUMHYD_01780	163.0	0	N/A	N/A
Pfam	UHGV-1376607_63	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1376607_63	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1376607_64	phrog_3266	94.0	1.3e-27	tail completion	connector
eggNOG-mapper	UHGV-1376607_64	476272.RUMHYD_01781	150.0	4.48416e-44	N/A	N/A
structural_annotation	UHGV-1376607_64	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1376607_65	phrog_3099	131.0	8e-39	N/A	unknown function
eggNOG-mapper	UHGV-1376607_65	411902.CLOBOL_00129	170.0	0	N/A	N/A
structural_annotation	UHGV-1376607_65	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1376607_66	phrog_11299	66.5	4.9e-19	N/A	unknown function
eggNOG-mapper	UHGV-1376607_66	411459.RUMOBE_01382	59.3	0.00000000298	N/A	N/A
structural_annotation	UHGV-1376607_66	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1376607_67	phrog_706	134.8	6e-40	N/A	unknown function
UniRef90	UHGV-1376607_67	UniRef90_UPI001BAD00AD	213.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1376607_67	411459.RUMOBE_01383	351.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1376607_67	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1376607_67	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1376607_68	phrog_1535	542.9	0	tail length tape measure protein	tail
UniRef90	UHGV-1376607_68	UniRef90_A0A173R880	475.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1376607_68	476272.RUMHYD_01785	477.0	0	phage tail tape measure protein	N/A
COG	UHGV-1376607_68	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1376607_68	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1376607_69	phrog_1194	84.9	7.5e-25	N/A	unknown function
eggNOG-mapper	UHGV-1376607_69	1122918.KB907248_gene4488	52.8	0.000000437	N/A	N/A
structural_annotation	UHGV-1376607_69	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1376607_70	phrog_6616	662.9	0	tail protein	tail
UniRef90	UHGV-1376607_70	UniRef90_UPI0015714EA8	635.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-1376607_70	33035.JPJF01000043_gene1002	248.0	0	N/A	N/A
structural_annotation	UHGV-1376607_70	PF05113,PF13884,NF033848,COG3500	N/A	N/A	N/A	N/A