UHGV-1377197 (vOTU-084041)

Viral Genome: UHGV-1377197

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1377197
vOTU ID	vOTU-084041
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0273764
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.47 (High-quality)
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9828
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.99
Jumbo phage	No

Genome content
Genome length (bp)	41,002
GC content	58.08%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	96%
Average CDS length (bps)	741.28
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 97.47)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1377197_2	UniRef90_A0A098GES5	101.0	4.65e-26	Putative phage associated protein	N/A
structural_annotation	UHGV-1377197_2	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1377197_5	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1377197_9	K22300	50.7	0.00000000000004	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1377197_9	phrog_8	43.6	0.000000000006	transcriptional regulator	transcription regulation
UniRef90	UHGV-1377197_9	UniRef90_A0A1Y4L0A2	109.0	2.53e-28	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1377197_9	411471.SUBVAR_05818	97.4	1.83e-24	sequence-specific DNA binding	N/A
Pfam	UHGV-1377197_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1377197_9	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1377197_9	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1377197_12	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1377197_13	K14059	130.6	2.1e-38	int; integrase	N/A
PHROG	UHGV-1377197_13	phrog_1	143.5	1.69978e-42	integrase	integration and excision
UniRef90	UHGV-1377197_13	UniRef90_A0A2Z4QB94	317.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1377197_13	641112.ACOK01000111_gene1860	107.0	1.6e-23	Phage integrase family	N/A
Pfam	UHGV-1377197_13	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1377197_13	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1377197_13	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1377197_14	UniRef90_A0A8F0WD75	73.6	0.000000000000388	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1377197_14	1378168.N510_03079	67.8	0.0000000000243	N/A	N/A
structural_annotation	UHGV-1377197_18	TIGR03826	N/A	N/A	N/A	N/A
PHROG	UHGV-1377197_19	phrog_25567	53.1	0.0000000000000044	N/A	unknown function
UniRef90	UHGV-1377197_19	UniRef90_UPI00164AED9E	118.0	3.08e-32	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1377197_19	1384065.JAGS01000001_gene3265	52.0	0.000000185	sequence-specific DNA binding	N/A
COG	UHGV-1377197_19	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-1377197_19	NF040522,COG2944	N/A	N/A	N/A	N/A
UniRef90	UHGV-1377197_20	UniRef90_A0A1C6JAI6	69.3	0.0000000000000881	RNA polymerase sigma factor, sigma-70 family	N/A
structural_annotation	UHGV-1377197_20	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-1377197_21	K11062	107.0	1.8e-31	entD; probable enterotoxin D	N/A
PHROG	UHGV-1377197_21	phrog_1794	108.8	7e-32	amidase	lysis
UniRef90	UHGV-1377197_21	UniRef90_A0A3D4VSU2	164.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1377197_21	397290.C810_00440	147.0	6.31e-39	Ami_2	N/A
Pfam	UHGV-1377197_21	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1377197_21	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1377197_21	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-1377197_22	phrog_6918	91.1	7.9e-27	holin	lysis
UniRef90	UHGV-1377197_22	UniRef90_G9YP36	111.0	1.32e-29	Phage holin, LL-H family	N/A
eggNOG-mapper	UHGV-1377197_22	1297617.JPJD01000020_gene301	92.0	8.42e-23	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1377197_22	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-1377197_22	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-1377197_24	phrog_937	49.0	0.00000000000011	hemolysin	other
eggNOG-mapper	UHGV-1377197_24	1519439.JPJG01000023_gene533	73.2	0.00000000000000359	N/A	N/A
KOfam	UHGV-1377197_25	K03651	63.9	2.5e-18	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	N/A
PHROG	UHGV-1377197_25	phrog_7158	59.2	4e-17	N/A	unknown function
UniRef90	UHGV-1377197_25	UniRef90_UPI001C0D9A0E	66.2	0.0000000925	metallophosphoesterase	N/A
Pfam	UHGV-1377197_25	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
structural_annotation	UHGV-1377197_25	PF02368,PF09423,MF_00575,NF003743,NF005261,COG5492	N/A	N/A	N/A	N/A
Pfam	UHGV-1377197_26	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
eggNOG-mapper	UHGV-1377197_27	1232443.BAIA02000078_gene14	59.7	0.000000262	nuclear chromosome segregation	N/A
COG	UHGV-1377197_27	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
KOfam	UHGV-1377197_28	K16617	41.9	0.0000000000064	COL13A; collagen type XIII alpha	N/A
PHROG	UHGV-1377197_28	phrog_819	42.8	0.0000000000023	tail protein	tail
Pfam	UHGV-1377197_28	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1377197_28	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-1377197_29	PF18962,NF011773	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1377197_30	1232449.BAHV02000016_gene1805	528.0	0	N/A	N/A
Pfam	UHGV-1377197_30	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
UniRef90	UHGV-1377197_31	UniRef90_R5DCX9	189.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1377197_31	1410650.JHWL01000003_gene2815	129.0	1.14e-30	N/A	N/A
eggNOG-mapper	UHGV-1377197_33	537007.BLAHAN_05255	67.0	0.00000000525	N/A	N/A
PHROG	UHGV-1377197_34	phrog_12105	115.6	2.6e-34	N/A	unknown function
PHROG	UHGV-1377197_35	phrog_15239	44.4	0.000000000002	N/A	unknown function
PHROG	UHGV-1377197_36	phrog_1357	242.3	0	major head protein	head and packaging
UniRef90	UHGV-1377197_36	UniRef90_A0A2V2CFL5	396.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1377197_36	1410650.JHWL01000003_gene2830	290.0	0	N/A	N/A
Pfam	UHGV-1377197_36	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1377197_36	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1377197_36	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1377197_37	phrog_13908	188.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1377197_37	1410650.JHWL01000003_gene2831	128.0	4.63e-32	N/A	N/A
PHROG	UHGV-1377197_38	phrog_156	305.4	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1377197_38	1410650.JHWL01000003_gene2833	534.0	0	N/A	N/A
structural_annotation	UHGV-1377197_38	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1377197_39	phrog_511	211.8	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1377197_39	1410650.JHWL01000003_gene2827	326.0	0	N/A	N/A
structural_annotation	UHGV-1377197_39	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
KOfam	UHGV-1377197_40	K06909	134.8	8e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1377197_40	phrog_2	124.7	1.2e-36	terminase large subunit	head and packaging
UniRef90	UHGV-1377197_40	UniRef90_A0A810Q5R0	609.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1377197_40	1410650.JHWL01000003_gene2834	576.0	0	N/A	N/A
Pfam	UHGV-1377197_40	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1377197_40	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1377197_40	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1377197_41	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-1377197_42	phrog_3584	116.2	2.5e-34	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1377197_42	537013.CLOSTMETH_02141	80.9	5.73e-16	N/A	N/A
structural_annotation	UHGV-1377197_42	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-1377197_43	phrog_21498	307.6	0	N/A	unknown function
eggNOG-mapper	UHGV-1377197_43	78346.BRUM_0376	265.0	0	DNA binding	N/A
COG	UHGV-1377197_43	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1377197_43	PF05869,TIGR01712	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1377197_44	665956.HMPREF1032_03087	57.8	0.00000000212	N/A	N/A
PHROG	UHGV-1377197_47	phrog_190	103.7	1.7e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1377197_47	UniRef90_UPI0006C2AC63	120.0	4.59e-32	N/A	N/A
eggNOG-mapper	UHGV-1377197_47	693746.OBV_25250	112.0	1.71e-29	N/A	N/A
Pfam	UHGV-1377197_47	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1377197_47	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-1377197_51	phrog_3136	124.9	2.4e-37	N/A	unknown function
UniRef90	UHGV-1377197_51	UniRef90_UPI001C00EDA4	133.0	1.16e-36	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1377197_51	331869.BAL199_13048	54.7	0.00000119	sequence-specific DNA binding	N/A
COG	UHGV-1377197_51	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1377197_51	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1377197_53	742817.HMPREF9449_01796	105.0	2.43e-26	radical SAM domain protein	N/A
COG	UHGV-1377197_53	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A