UHGV-1377259 (vOTU-141211)

Viral Genome: UHGV-1377259

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1377259
vOTU ID	vOTU-141211
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0172299
Associated BioSample	SAMEA3879508
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.14 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9808
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.13
Jumbo phage	No

Genome content
Genome length (bp)	23,518
GC content	42.98%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	30
CDS density	90%
Average CDS length (bps)	702.00
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 50.14)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1377259_1	K03671	72.2	1.4e-20	trxA; thioredoxin 1	N/A
UniRef90	UHGV-1377259_1	UniRef90_W0U639	209.0	0	Thioredoxin domain-containing protein	N/A
eggNOG-mapper	UHGV-1377259_1	1160721.RBI_I01238	209.0	0	Thioredoxin	N/A
Pfam	UHGV-1377259_1	PF00085	N/A	N/A	Thioredoxin	Thioredoxin
COG	UHGV-1377259_1	COG3118	N/A	N/A	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	N/A
structural_annotation	UHGV-1377259_1	PF00085,MF_01319,TIGR01068,COG0526	N/A	N/A	N/A	N/A
KOfam	UHGV-1377259_2	K06400	274.9	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1377259_2	phrog_95	284.1	0	integrase	integration and excision
UniRef90	UHGV-1377259_2	UniRef90_A0A1C6DDF2	534.0	0	DNA-invertase hin	N/A
eggNOG-mapper	UHGV-1377259_2	1395513.P343_09910	189.0	0	PFAM Resolvase domain	N/A
Pfam	UHGV-1377259_2	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1377259_2	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-1377259_2	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1377259_2	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-1377259_3	phrog_18108	105.9	4e-31	N/A	unknown function
UniRef90	UHGV-1377259_3	UniRef90_UPI0004BFFB0D	114.0	5.79e-28	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1377259_3	457405.FSDG_00799	130.0	9.51e-36	N/A	N/A
structural_annotation	UHGV-1377259_3	PF07443	N/A	N/A	N/A	N/A
PHROG	UHGV-1377259_4	phrog_13890	58.3	1e-16	N/A	unknown function
UniRef90	UHGV-1377259_4	UniRef90_R6T165	122.0	1.64e-35	Protein CopB	N/A
eggNOG-mapper	UHGV-1377259_4	1449063.JMLS01000003_gene1771	54.3	0.00000000469	N/A	N/A
Pfam	UHGV-1377259_4	PF10723	N/A	N/A	Replication regulatory protein RepB	RepB-RCR_reg
structural_annotation	UHGV-1377259_4	PF10723,NF010256,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-1377259_5	phrog_297	168.7	0	holin	lysis
UniRef90	UHGV-1377259_5	UniRef90_A0A356CY82	468.0	0	Peptidase C51 domain-containing protein	N/A
eggNOG-mapper	UHGV-1377259_5	1160721.RBI_II00521	93.2	7.23e-20	hydrolase, family 25	N/A
Pfam	UHGV-1377259_5	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-1377259_5	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1377259_5	PF06940,TIGR02594,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-1377259_6	phrog_199	81.2	1.1e-23	holin	lysis
UniRef90	UHGV-1377259_6	UniRef90_A0A373XMP0	283.0	0	Holin	N/A
eggNOG-mapper	UHGV-1377259_6	1160721.RBI_I01565	183.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1377259_6	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1377259_6	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1377259_6	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1377259_6	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1377259_7	phrog_134	62.8	4e-18	N/A	unknown function
UniRef90	UHGV-1377259_7	UniRef90_A0A373PY86	85.9	2.43e-21	XkdX family protein	N/A
eggNOG-mapper	UHGV-1377259_7	478749.BRYFOR_07560	54.3	0.00000000125	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-1377259_7	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
NCBIFam	UHGV-1377259_7	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
structural_annotation	UHGV-1377259_7	PF09693,TIGR01669	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1377259_9	1410617.JHXH01000006_gene232	84.0	0.0000000000000232	N/A	N/A
structural_annotation	UHGV-1377259_9	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1377259_11	phrog_9680	52.8	1.6e-16	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1377259_11	UniRef90_R5LL83	68.2	0.00000000676	KID repeat-containing protein	N/A
eggNOG-mapper	UHGV-1377259_11	1160721.RBI_II00526	498.0	0	N/A	N/A
structural_annotation	UHGV-1377259_11	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1377259_12	phrog_1194	86.5	2.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-1377259_12	1160721.RBI_II00527	123.0	9.79e-35	N/A	N/A
structural_annotation	UHGV-1377259_12	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-1377259_13	K10398	40.0	0.000000000000001	KIF11, EG5; kinesin family member 11	N/A
PHROG	UHGV-1377259_13	phrog_1535	118.7	5.60519e-44	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1377259_13	1121866.AUGK01000003_gene1437	217.0	0	phage tail tape measure protein	N/A
COG	UHGV-1377259_13	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
UniRef90	UHGV-1377259_15	UniRef90_A0A374HKD4	226.0	0	N/A	N/A
eggNOG-mapper	UHGV-1377259_15	1123263.AUKY01000015_gene1618	77.4	5.76e-17	N/A	N/A
Pfam	UHGV-1377259_15	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-1377259_15	PF16478	N/A	N/A	N/A	N/A
UniRef90	UHGV-1377259_16	UniRef90_U2PUJ2	52.8	0.00000535	Major tail protein	N/A
eggNOG-mapper	UHGV-1377259_16	1294142.CINTURNW_1696	52.8	0.000000897	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-1377259_16	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1377259_17	phrog_78	41.5	0.000000000022	tail terminator	connector
structural_annotation	UHGV-1377259_17	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
UniRef90	UHGV-1377259_18	UniRef90_UPI001BBD4500	124.0	3.44e-33	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1377259_18	397290.C810_01411	112.0	5.13e-29	N/A	N/A
eggNOG-mapper	UHGV-1377259_19	1121866.AUGK01000003_gene1432	60.5	0.000000000645	N/A	N/A
UniRef90	UHGV-1377259_20	UniRef90_A0A374HKI7	202.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1377259_20	996306.SSUR61_0983	56.2	0.00000000776	N/A	N/A
Pfam	UHGV-1377259_20	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-1377259_20	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1377259_21	phrog_29	198.9	0	major head protein	head and packaging
UniRef90	UHGV-1377259_21	UniRef90_A0A374HKR5	823.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1377259_21	1232453.BAIF02000058_gene1628	317.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1377259_21	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
Pfam	UHGV-1377259_21	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-1377259_21	PF03864,PF18316,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1377259_22	phrog_909	88.3	6.8e-26	major head protein	head and packaging
eggNOG-mapper	UHGV-1377259_22	1536772.R70723_06665	60.8	0.000000000153	N/A	N/A
UniRef90	UHGV-1377259_23	UniRef90_A0A7C7EK05	75.9	0.000000000000114	N/A	N/A
eggNOG-mapper	UHGV-1377259_23	1232453.BAIF02000058_gene1626	101.0	3.71e-24	N/A	N/A
structural_annotation	UHGV-1377259_23	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1377259_24	phrog_2468	91.7	8.5e-29	head morphogenesis	head and packaging
UniRef90	UHGV-1377259_24	UniRef90_A0A374HKG4	434.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1377259_24	649747.HMPREF0083_01681	82.8	3.61e-16	phage Mu protein	N/A
Pfam	UHGV-1377259_24	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1377259_24	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1377259_24	PF04233,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-1377259_25	phrog_64	210.7	0	portal protein	head and packaging
UniRef90	UHGV-1377259_25	UniRef90_A0A374HKE8	915.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1377259_25	1121866.AUGK01000003_gene1429	315.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1377259_25	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1377259_25	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1377259_27	phrog_38	180.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-1377259_27	UniRef90_A0A3D4KYF7	304.0	0	DOD-type homing endonuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-1377259_27	1232453.BAIF02000058_gene1623	278.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-1377259_27	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-1377259_27	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1377259_27	PF17289,PF03237,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
KOfam	UHGV-1377259_28	K14060	133.9	1.6e-39	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1377259_28	phrog_125	138.4	4.99997e-41	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1377259_28	UniRef90_A0A374HKF2	355.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1377259_28	931276.Cspa_c57140	194.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1377259_28	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-1377259_28	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1377259_28	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-1377259_30	UniRef90_A0A374HMV1	105.0	5.08e-28	HTH cro/C1-type domain-containing protein	N/A
structural_annotation	UHGV-1377259_30	PF20075,TIGR03070	N/A	N/A	N/A	N/A