UHGV-1377637 (vOTU-004093)

Viral Genome: UHGV-1377637

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1377637
vOTU ID	vOTU-004093
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0285272
Associated BioSample	SAMN05826671
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9821
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.21
Jumbo phage	No

Genome content
Genome length (bp)	43,193
GC content	54.90%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	72
CDS density	92%
Average CDS length (bps)	552.46
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1377637_1	phrog_27197	89.5	2.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-1377637_1	394503.Ccel_3068	57.4	0.0000000117	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1377637_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1377637_1	NF007410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1377637_3	PF10743,NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1377637_4	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1377637_6	PF14120	N/A	N/A	N/A	N/A
PHROG	UHGV-1377637_7	phrog_674	147.3	1.09301e-43	N/A	unknown function
UniRef90	UHGV-1377637_7	UniRef90_A0A3A6E846	481.0	0	N/A	N/A
eggNOG-mapper	UHGV-1377637_7	556268.OFAG_00840	87.0	5.43e-17	N/A	N/A
Pfam	UHGV-1377637_7	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1377637_7	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1377637_8	phrog_2760	184.6	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1377637_8	UniRef90_A0A3A6EAW6	495.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-1377637_8	1235794.C811_01355	152.0	1.73004e-41	RecT family	N/A
Pfam	UHGV-1377637_8	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1377637_8	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-1377637_8	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1377637_8	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
UniRef90	UHGV-1377637_9	UniRef90_UPI001CBB85F6	117.0	7.5e-30	single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1377637_9	PF00436,MF_00720,NF004512,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1377637_10	K02086	62.7	3.9e-18	dnaD; DNA replication protein	N/A
PHROG	UHGV-1377637_10	phrog_186	71.6	1.3e-20	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1377637_10	UniRef90_A0A6N7TLH4	452.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-1377637_10	877411.JMMA01000002_gene2052	63.5	0.00000000569	N/A	N/A
Pfam	UHGV-1377637_10	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-1377637_10	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1377637_10	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-1377637_10	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1377637_11	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1377637_13	phrog_757	187.8	0	DNA methyltransferase	other
UniRef90	UHGV-1377637_13	UniRef90_UPI000F638571	275.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1377637_13	748224.HMPREF9436_03069	293.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1377637_13	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1377637_13	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-1377637_15	K01160	58.7	1.8e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1377637_15	phrog_34	60.7	2.9e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1377637_15	UniRef90_A0A6N7TND6	222.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1377637_15	875454.BAEW01000002_gene491	131.0	6.44e-38	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1377637_15	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1377637_15	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1377637_15	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1377637_17	phrog_36	73.0	5e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-1377637_17	UniRef90_A0A6N7TNN9	269.0	0	N/A	N/A
eggNOG-mapper	UHGV-1377637_17	748224.HMPREF9436_01463	78.2	2.25e-16	N/A	N/A
Pfam	UHGV-1377637_17	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-1377637_17	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-1377637_18	phrog_606	88.9	5.7e-26	terminase small subunit	head and packaging
UniRef90	UHGV-1377637_18	UniRef90_UPI001C02EFD1	331.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1377637_18	397290.C810_05185	142.0	1.84999e-40	DNA-packaging protein gp3	N/A
Pfam	UHGV-1377637_18	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1377637_18	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1377637_19	K06909	142.7	3.39955e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1377637_19	phrog_10250	173.6	0	N/A	unknown function
UniRef90	UHGV-1377637_19	UniRef90_A0A844D8I4	839.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1377637_19	411490.ANACAC_00783	484.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1377637_19	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1377637_19	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1377637_19	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1377637_19	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1377637_19	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1377637_20	phrog_64	125.8	1.6e-37	portal protein	head and packaging
UniRef90	UHGV-1377637_20	UniRef90_A0A6N7TNT3	898.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1377637_20	642492.Clole_2764	85.5	0.00000000000000545	phage portal protein, SPP1	N/A
Pfam	UHGV-1377637_20	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1377637_20	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1377637_21	phrog_21498	297.3	0	N/A	unknown function
eggNOG-mapper	UHGV-1377637_21	78346.BRUM_0376	261.0	0	DNA binding	N/A
COG	UHGV-1377637_21	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1377637_21	PF05869,TIGR01712	N/A	N/A	N/A	N/A
PHROG	UHGV-1377637_22	phrog_2468	80.7	1.2e-23	head morphogenesis	head and packaging
UniRef90	UHGV-1377637_22	UniRef90_A0A6N7TLR7	641.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1377637_22	1504822.CCNO01000013_gene286	113.0	9.93e-25	cell adhesion	N/A
Pfam	UHGV-1377637_22	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1377637_22	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1377637_22	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1377637_23	706437.HMPREF0813_02005	87.4	1.96e-20	N/A	N/A
PHROG	UHGV-1377637_24	phrog_8680	200.5	0	N/A	unknown function
UniRef90	UHGV-1377637_24	UniRef90_A0A844D688	457.0	0	N/A	N/A
eggNOG-mapper	UHGV-1377637_24	1423790.BN53_04265	182.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-1377637_24	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-1377637_24	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1377637_24	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-1377637_26	phrog_5	48.5	0.00000000000021	tail completion or Neck1 protein	connector
UniRef90	UHGV-1377637_26	UniRef90_A0A6N7TNP6	300.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1377637_26	1123309.AQYB01000018_gene814	91.7	1.12e-21	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1377637_26	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1377637_26	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1377637_29	phrog_544	146.8	1.49939e-43	major head protein	head and packaging
UniRef90	UHGV-1377637_29	UniRef90_R0BKA1	433.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1377637_29	476272.RUMHYD_01776	327.0	0	N/A	N/A
structural_annotation	UHGV-1377637_29	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
UniRef90	UHGV-1377637_31	UniRef90_A0A844DHJ8	115.0	1.08e-30	Phage head closure protein	N/A
structural_annotation	UHGV-1377637_31	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1377637_32	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-1377637_33	phrog_885	71.4	1.1e-20	major tail protein	tail
eggNOG-mapper	UHGV-1377637_33	1111121.HMPREF1247_0789	170.0	0	N/A	N/A
structural_annotation	UHGV-1377637_33	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1377637_36	phrog_28775	135.8	3.20001e-40	tail length tape measure protein	tail
UniRef90	UHGV-1377637_36	UniRef90_A0A6N7TLD3	1426.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-1377637_36	662755.CRES_0873	129.0	1.58e-27	phage tail tape measure protein	N/A
Pfam	UHGV-1377637_36	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1377637_36	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1377637_36	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1377637_36	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-1377637_37	UniRef90_A0A417QGC1	115.0	8.73e-28	MtfA protein	N/A
eggNOG-mapper	UHGV-1377637_37	411490.ANACAC_00709	102.0	1.5e-23	phage tail	N/A
COG	UHGV-1377637_37	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1377637_37	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1377637_38	phrog_3558	201.7	0	tail protein	tail
UniRef90	UHGV-1377637_38	UniRef90_A0A5K7WYH0	66.6	0.0000000644	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1377637_38	1035184.HMPREF1042_1326	84.0	0.0000000000000351	Prophage endopeptidase tail	N/A
Pfam	UHGV-1377637_38	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-1377637_38	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1377637_38	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1377637_39	748224.HMPREF9436_01407	160.0	5.75934e-43	COG NOG18825 non supervised orthologous group	N/A
PHROG	UHGV-1377637_41	phrog_1382	49.4	0.000000000000036	N/A	unknown function
eggNOG-mapper	UHGV-1377637_41	411468.CLOSCI_00272	46.2	0.00000328	N/A	N/A
KOfam	UHGV-1377637_42	K07273	175.2	0	acm; lysozyme	N/A
PHROG	UHGV-1377637_42	phrog_291	147.8	8.96831e-44	endolysin	lysis
UniRef90	UHGV-1377637_42	UniRef90_E2ZES5	340.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-1377637_42	748224.HMPREF9436_00154	340.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1377637_42	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1377637_42	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1377637_42	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1377637_44	phrog_15303	115.8	2.2e-34	N/A	unknown function
Pfam	UHGV-1377637_44	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UniRef90	UHGV-1377637_45	UniRef90_UPI0018835F0C	530.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-1377637_45	411483.FAEPRAA2165_00757	168.0	1.20512e-43	N/A	N/A
structural_annotation	UHGV-1377637_45	PF10651	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1377637_47	PF07870,MF_01506	N/A	N/A	N/A	N/A
PHROG	UHGV-1377637_50	phrog_3754	98.0	9e-29	N/A	unknown function
eggNOG-mapper	UHGV-1377637_50	1235790.C805_00054	112.0	1.6e-30	N/A	N/A
PHROG	UHGV-1377637_51	phrog_21718	124.2	8e-37	N/A	unknown function
eggNOG-mapper	UHGV-1377637_51	397290.C810_05210	102.0	1.88e-25	N/A	N/A
PHROG	UHGV-1377637_52	phrog_22984	80.2	1.6e-23	N/A	unknown function
PHROG	UHGV-1377637_53	phrog_16490	146.3	1.79366e-43	N/A	unknown function
eggNOG-mapper	UHGV-1377637_53	1408437.JNJN01000043_gene803	142.0	8.49e-39	N/A	N/A
PHROG	UHGV-1377637_55	phrog_20016	197.4	0	N/A	unknown function
UniRef90	UHGV-1377637_55	UniRef90_A0A285PT46	213.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1377637_55	1226322.HMPREF1545_00077	182.0	0	N/A	N/A
structural_annotation	UHGV-1377637_55	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1377637_56	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-1377637_58	K14059	141.7	8.39938e-42	int; integrase	N/A
PHROG	UHGV-1377637_58	phrog_1	165.0	0	integrase	integration and excision
UniRef90	UHGV-1377637_58	UniRef90_A0A6N7TNQ4	744.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1377637_58	411471.SUBVAR_05137	261.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1377637_58	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1377637_58	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1377637_58	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1377637_59	UniRef90_A0A6N7TLT0	392.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1377637_59	266265.Bxe_A3948	53.1	0.000000484	Helix-turn-helix domain	N/A
Pfam	UHGV-1377637_59	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1377637_59	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1377637_59	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1377637_62	phrog_888	66.0	1.5e-35	N/A	unknown function
UniRef90	UHGV-1377637_62	UniRef90_A0A6N7TMA2	444.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-1377637_62	1415774.U728_165	84.0	1.57e-16	Short C-terminal domain	N/A
Pfam	UHGV-1377637_62	PF14471	N/A	N/A	N/A	DUF4428
Pfam	UHGV-1377637_62	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-1377637_62	PF15947,PF14471	N/A	N/A	N/A	N/A
KOfam	UHGV-1377637_65	K22300	61.9	1.4e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1377637_65	phrog_8	47.4	0.00000000000026	transcriptional regulator	transcription regulation
UniRef90	UHGV-1377637_65	UniRef90_A0A844DFR0	235.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1377637_65	748224.HMPREF9436_01444	176.0	0	N/A	N/A
PADLOC	UHGV-1377637_65	retron_type_VI_hth_cluster2_1	41.2	0.000000000023	N/A	Retron
Pfam	UHGV-1377637_65	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1377637_65	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1377637_65	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1377637_70	phrog_4652	91.9	1.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-1377637_70	397290.C810_01459	160.0	0	N/A	N/A
structural_annotation	UHGV-1377637_70	TIGR02582,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-1377637_71	phrog_15946	79.0	6.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-1377637_71	1041147.AUFB01000014_gene330	53.9	0.00000143	N/A	N/A
PHROG	UHGV-1377637_72	phrog_4433	126.1	2.9e-37	N/A	unknown function
UniRef90	UHGV-1377637_72	UniRef90_A0A6M5C839	101.0	2.98e-24	Putative ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-1377637_72	33035.JPJF01000122_gene2458	103.0	7.88e-25	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1377637_72	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A