UHGV-1378217 (vOTU-109453)

Viral Genome: UHGV-1378217

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1378217
vOTU ID	vOTU-109453
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0162433
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.09 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9825
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	9.86
Jumbo phage	No

Genome content
Genome length (bp)	22,146
GC content	54.96%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	39
CDS density	96%
Average CDS length (bps)	546.85
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 53.09)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1378217_1	phrog_9562	135.5	9.99995e-41	N/A	unknown function
UniRef90	UHGV-1378217_1	UniRef90_A0A1C5W9L2	257.0	0	Type III effector pipB2	N/A
eggNOG-mapper	UHGV-1378217_1	1226322.HMPREF1545_00011	259.0	0	Pentapeptide repeats (8 copies)	N/A
Pfam	UHGV-1378217_1	PF19062	N/A	N/A	N/A	DUF5758
COG	UHGV-1378217_1	COG1357	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1378217_1	PF19062	N/A	N/A	N/A	N/A
PHROG	UHGV-1378217_2	phrog_22529	86.3	2.4e-25	N/A	unknown function
UniRef90	UHGV-1378217_2	UniRef90_A0A7T7IG06	229.0	0	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-1378217_2	1226322.HMPREF1545_00012	202.0	0	3D domain	N/A
Pfam	UHGV-1378217_2	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-1378217_2	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-1378217_2	PF06725,MF_02071,NF040670,COG3584	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1378217_3	PF01381,PF13613,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1378217_5	phrog_155	143.9	1.00053e-42	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1378217_5	UniRef90_UPI001C126E67	249.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-1378217_5	97138.C820_00777	174.0	0	ERF superfamily	N/A
Pfam	UHGV-1378217_5	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1378217_5	PF04404,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-1378217_6	K03111	44.7	0.0000000000032	ssb; single-strand DNA-binding protein	N/A
UniRef90	UHGV-1378217_6	UniRef90_A0A4D7AYE9	271.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1378217_6	1226322.HMPREF1545_04080	50.4	0.00000784	Single-strand binding protein family	N/A
Pfam	UHGV-1378217_6	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-1378217_6	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1378217_6	PF00436,MF_00984,NF006297,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1378217_7	PF12844,MF_00535,NF041951,COG5499	N/A	N/A	N/A	N/A
PHROG	UHGV-1378217_8	phrog_15768	52.4	0.000000000000011	N/A	unknown function
UniRef90	UHGV-1378217_8	UniRef90_A0A4D7AS84	110.0	1.25e-26	N/A	N/A
eggNOG-mapper	UHGV-1378217_8	1121344.JHZO01000003_gene982	62.8	0.00000000408	N/A	N/A
Pfam	UHGV-1378217_8	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1378217_8	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-1378217_9	phrog_244	66.0	8.6e-19	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1378217_9	UniRef90_A0A841R0Q1	157.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-1378217_9	1123250.KB908417_gene653	142.0	2.04029e-42	N/A	N/A
structural_annotation	UHGV-1378217_9	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-1378217_11	K00390	75.3	4.6e-23	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1378217_11	phrog_424	94.0	7.4e-28	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1378217_11	UniRef90_A0A173RB32	339.0	0	PUA domain (Predicted RNA-binding domain)	N/A
eggNOG-mapper	UHGV-1378217_11	641112.ACOK01000119_gene1505	325.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-1378217_11	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1378217_11	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
PHROG	UHGV-1378217_12	phrog_599	48.8	0.00000000000014	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1378217_12	UniRef90_UPI0018AC14ED	101.0	4.18e-26	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-1378217_12	742738.HMPREF9460_04054	78.2	1.45e-17	Restriction alleviation protein Lar	N/A
Pfam	UHGV-1378217_12	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1378217_12	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-1378217_12	PF14354,NF007260	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1378217_13	1232449.BAHV02000018_gene1537	118.0	2.46e-32	N/A	N/A
UniRef90	UHGV-1378217_14	UniRef90_UPI001C3A10B1	59.7	0.00000000245	Zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-1378217_14	1226322.HMPREF1545_00023	66.2	0.00000000000146	N/A	N/A
PHROG	UHGV-1378217_15	phrog_36365	122.8	9e-37	N/A	unknown function
eggNOG-mapper	UHGV-1378217_15	476272.RUMHYD_01925	57.0	0.000000000405	N/A	N/A
PHROG	UHGV-1378217_17	phrog_25732	97.8	5.9e-29	N/A	unknown function
structural_annotation	UHGV-1378217_17	NF011227	N/A	N/A	N/A	N/A
PHROG	UHGV-1378217_19	phrog_8684	81.5	3.9e-25	N/A	unknown function
UniRef90	UHGV-1378217_19	UniRef90_UPI00164C829D	175.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-1378217_19	1226322.HMPREF1545_00036	70.5	0.0000000000000698	YopX protein	N/A
Pfam	UHGV-1378217_19	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-1378217_19	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-1378217_20	phrog_599	40.1	0.000000000069	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1378217_20	UniRef90_A0A1C5WAG7	155.0	0	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-1378217_20	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-1378217_20	PF14354	N/A	N/A	N/A	N/A
UniRef90	UHGV-1378217_22	UniRef90_A0A810QFN4	464.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1378217_22	1519439.JPJG01000011_gene53	958.0	0	N/A	N/A
eggNOG-mapper	UHGV-1378217_23	693746.OBV_01600	224.0	0	N/A	N/A
PHROG	UHGV-1378217_25	phrog_20016	193.8	0	N/A	unknown function
UniRef90	UHGV-1378217_25	UniRef90_A0A285PT46	191.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1378217_25	1226322.HMPREF1545_00077	171.0	0	N/A	N/A
structural_annotation	UHGV-1378217_25	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1378217_26	phrog_16490	143.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1378217_26	1226322.HMPREF1545_00076	226.0	0	N/A	N/A
PHROG	UHGV-1378217_27	phrog_22984	120.3	6.3e-36	N/A	unknown function
PHROG	UHGV-1378217_28	phrog_21718	174.7	0	N/A	unknown function
eggNOG-mapper	UHGV-1378217_28	397290.C810_05210	56.2	0.0000000716	N/A	N/A
PHROG	UHGV-1378217_29	phrog_3754	122.7	1.3e-36	N/A	unknown function
eggNOG-mapper	UHGV-1378217_29	1226322.HMPREF1545_00073	257.0	0	N/A	N/A
UniRef90	UHGV-1378217_31	UniRef90_U2R3E6	134.0	4.00001e-40	KORA domain-containing protein	N/A
structural_annotation	UHGV-1378217_31	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1378217_32	phrog_21825	115.9	3.8e-34	endolysin	lysis
UniRef90	UHGV-1378217_32	UniRef90_A0A1C5WDQ0	414.0	0	CHAP domain	N/A
eggNOG-mapper	UHGV-1378217_32	693746.OBV_18290	213.0	0	CHAP domain	N/A
Pfam	UHGV-1378217_32	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-1378217_32	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1378217_32	PF00877,TIGR02594,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-1378217_33	phrog_13256	78.6	4.3e-23	N/A	unknown function
eggNOG-mapper	UHGV-1378217_33	1226322.HMPREF1545_00132	90.1	6.48e-23	N/A	N/A
PHROG	UHGV-1378217_34	phrog_355	58.4	1.1e-16	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1378217_34	UniRef90_A0A417J5P5	196.0	0	N/A	N/A
eggNOG-mapper	UHGV-1378217_34	97138.C820_00250	129.0	1.38e-37	N/A	N/A
Pfam	UHGV-1378217_34	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-1378217_34	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-1378217_35	phrog_23092	156.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1378217_35	1226322.HMPREF1545_02799	139.0	3.50997e-41	N/A	N/A
PHROG	UHGV-1378217_36	phrog_937	50.0	0.00000000000003	hemolysin	other
eggNOG-mapper	UHGV-1378217_36	445972.ANACOL_03381	117.0	7.49e-33	N/A	N/A
PHROG	UHGV-1378217_37	phrog_2310	58.0	9.5e-17	N/A	unknown function
PHROG	UHGV-1378217_38	phrog_4628	44.1	0.000000000004	tail fiber assembly	tail
eggNOG-mapper	UHGV-1378217_38	1226322.HMPREF1545_00128	97.8	5.69e-25	N/A	N/A
PHROG	UHGV-1378217_39	phrog_10993	264.8	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-1378217_39	UniRef90_U2SK79	673.0	0	N/A	N/A
eggNOG-mapper	UHGV-1378217_39	1226322.HMPREF1545_00064	673.0	0	N/A	N/A