UHGV-1379461 (vOTU-142139)

Viral Genome: UHGV-1379461

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1379461
vOTU ID	vOTU-142139
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0170970
Associated BioSample	SAMEA2737962
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.16 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9834
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.33
Jumbo phage	No

Genome content
Genome length (bp)	23,335
GC content	40.74%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	25
CDS density	94%
Average CDS length (bps)	878.76
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 57.16)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1379461_1	phrog_1309	175.0	0	endolysin	lysis
UniRef90	UHGV-1379461_1	UniRef90_A0A1E1G7V3	495.0	0	Autolysin	N/A
eggNOG-mapper	UHGV-1379461_1	997830.HMPREF1124_0615	363.0	0	CHAP domain	N/A
Pfam	UHGV-1379461_1	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-1379461_1	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
COG	UHGV-1379461_1	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-1379461_1	PF19127,PF05257,TIGR04035,TIGR02594,COG5263	N/A	N/A	N/A	N/A
PHROG	UHGV-1379461_2	phrog_608	141.3	2.7003e-42	holin	lysis
UniRef90	UHGV-1379461_2	UniRef90_A0A139PJX3	197.0	0	Phage holin	N/A
eggNOG-mapper	UHGV-1379461_2	365659.smi_0477	193.0	0	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1379461_2	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
NCBIFam	UHGV-1379461_2	TIGR01673.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-1379461_2	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-1379461_3	phrog_199	57.0	2.5e-16	holin	lysis
UniRef90	UHGV-1379461_3	UniRef90_A0A3R9KVL9	238.0	0	Holin family protein	N/A
eggNOG-mapper	UHGV-1379461_3	413066.A1EAB5_9CAUD	157.0	0	Pfam:Phage_holin_4_1	N/A
Pfam	UHGV-1379461_3	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1379461_3	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-1379461_3	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1379461_4	phrog_1164	217.8	0	N/A	unknown function
UniRef90	UHGV-1379461_4	UniRef90_A0A4F6TM58	207.0	0	N/A	N/A
eggNOG-mapper	UHGV-1379461_4	1214184.ALKY01000039_gene905	176.0	0	N/A	N/A
PHROG	UHGV-1379461_5	phrog_1137	85.5	3.4e-25	N/A	unknown function
UniRef90	UHGV-1379461_5	UniRef90_A0A1X0WPX7	85.1	1.81e-20	Dihydrodipicolinate reductase	N/A
PHROG	UHGV-1379461_6	phrog_2270	814.2	0	N/A	unknown function
UniRef90	UHGV-1379461_6	UniRef90_UPI0007C53189	1800.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-1379461_6	1297534.CAUJ01000005_gene170	1282.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1379461_6	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-1379461_6	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-1379461_6	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1379461_6	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1379461_6	PF14594,PF21582,TIGR01665,NF033675,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1379461_7	phrog_33	61.3	2.6e-17	distal tail protein Dit	tail
UniRef90	UHGV-1379461_7	UniRef90_A0A081R6K6	405.0	0	Phage tail family protein	N/A
eggNOG-mapper	UHGV-1379461_7	768726.HMPREF9178_1053	323.0	0	N/A	N/A
COG	UHGV-1379461_7	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1379461_7	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1379461_8	phrog_1293	1228.3	0	tail length tape measure protein	tail
UniRef90	UHGV-1379461_8	UniRef90_A0A1X1KNE2	1706.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1379461_8	1282664.H354_07735	1132.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-1379461_8	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1379461_8	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1379461_8	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1379461_8	PF10145,TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-1379461_9	phrog_187	50.2	0.000000000000041	head-tail adaptor	connector
UniRef90	UHGV-1379461_9	UniRef90_W1TSL8	138.0	2.91001e-40	N/A	N/A
structural_annotation	UHGV-1379461_9	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-1379461_10	phrog_88	148.7	3.08286e-44	major tail protein	tail
UniRef90	UHGV-1379461_10	UniRef90_K8MKC2	354.0	0	Phi13 family phage major tail protein	N/A
eggNOG-mapper	UHGV-1379461_10	1289596.M1PRQ7_9CAUD	260.0	0	Pfam:Phage_TTP_1	N/A
NCBIFam	UHGV-1379461_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1379461_10	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1379461_11	phrog_78	98.1	7.6e-29	tail terminator	connector
UniRef90	UHGV-1379461_11	UniRef90_A0A4U9Y315	196.0	0	N/A	N/A
eggNOG-mapper	UHGV-1379461_11	1154860.SAG0136_08115	189.0	0	N/A	N/A
structural_annotation	UHGV-1379461_11	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1379461_12	phrog_5	44.5	0.000000000004	tail completion or Neck1 protein	connector
UniRef90	UHGV-1379461_12	UniRef90_K8MSD6	220.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1379461_12	1154860.SAG0136_08110	149.0	4.2039e-45	N/A	N/A
Pfam	UHGV-1379461_12	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1379461_12	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1379461_12	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1379461_13	phrog_25	74.1	1.8e-21	head closure Hc1	connector
UniRef90	UHGV-1379461_13	UniRef90_A0A1X1KND5	198.0	0	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-1379461_13	1154860.SAG0136_08105	145.0	1.55544e-43	Phage head-tail joining protein	N/A
Pfam	UHGV-1379461_13	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-1379461_13	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1379461_14	phrog_40	66.9	2e-19	head-tail adaptor Ad1	connector
UniRef90	UHGV-1379461_14	UniRef90_UPI001157CE27	177.0	0	head-tail connector protein	N/A
eggNOG-mapper	UHGV-1379461_14	1225805.J7KDJ3_9CAUD	132.0	4.62e-39	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-1379461_14	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-1379461_14	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
PHROG	UHGV-1379461_15	phrog_10	195.3	0	major head protein	head and packaging
UniRef90	UHGV-1379461_15	UniRef90_A0A4D6A849	689.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-1379461_15	1314.HKU360_01222	456.0	0	capsid protein	N/A
Pfam	UHGV-1379461_15	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1379461_15	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1379461_15	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1379461_15	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1379461_16	K01358	131.9	6.7e-39	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1379461_16	phrog_94	207.4	0	head maturation protease	head and packaging
UniRef90	UHGV-1379461_16	UniRef90_A0A428GXI4	395.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1379461_16	1123309.AQYB01000019_gene894	358.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1379461_16	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1379461_16	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1379461_16	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1379461_17	phrog_12	223.6	0	portal protein	head and packaging
UniRef90	UHGV-1379461_17	UniRef90_A0A4D6A864	778.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1379461_17	1403946.Q615_SPAC00127G0138	636.0	0	Phage portal protein	N/A
Pfam	UHGV-1379461_17	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1379461_17	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1379461_17	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1379461_17	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1379461_18	phrog_9	378.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-1379461_18	UniRef90_A0A1X1KNW8	1073.0	0	Amino acid transporter	N/A
eggNOG-mapper	UHGV-1379461_18	1154860.SAG0136_08065	960.0	0	Terminase	N/A
Pfam	UHGV-1379461_18	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1379461_18	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1379461_18	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1379461_18	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1379461_19	phrog_83	130.9	7.6e-39	terminase small subunit	head and packaging
UniRef90	UHGV-1379461_19	UniRef90_A0A1X1KND2	283.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1379461_19	1154860.SAG0136_08060	202.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-1379461_19	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-1379461_19	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-1379461_19	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1379461_19	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1379461_20	phrog_589	78.3	7.3e-23	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1379461_20	UniRef90_A0A081R6M5	207.0	0	HNH endonuclease family protein	N/A
eggNOG-mapper	UHGV-1379461_20	1154860.SAG0136_08055	181.0	0	HNH nucleases	N/A
Pfam	UHGV-1379461_20	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1379461_20	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1379461_20	PF05766	N/A	N/A	N/A	N/A
PHROG	UHGV-1379461_21	phrog_36	77.7	1.6e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-1379461_21	UniRef90_X8KCQ7	219.0	0	PF07374 family protein	N/A
eggNOG-mapper	UHGV-1379461_21	936580.HMPREF1516_0728	219.0	0	sigma factor activity	N/A
Pfam	UHGV-1379461_21	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-1379461_21	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1379461_21	PF07374,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1379461_22	phrog_98	73.9	2.3e-21	N/A	unknown function
UniRef90	UHGV-1379461_22	UniRef90_A0A3R9JPZ4	165.0	0	YopX protein	N/A
eggNOG-mapper	UHGV-1379461_22	320836.Q4ZD40_9CAUD	63.2	0.0000000000443	YopX protein	N/A
Pfam	UHGV-1379461_22	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-1379461_22	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-1379461_23	phrog_7136	54.5	0.0000000000000021	N/A	unknown function
PHROG	UHGV-1379461_24	phrog_121	128.0	6e-38	N/A	unknown function
UniRef90	UHGV-1379461_24	UniRef90_UPI0005EA62A7	221.0	0	N/A	N/A
eggNOG-mapper	UHGV-1379461_24	936580.HMPREF1516_0729	149.0	5.11474e-43	N/A	N/A
Pfam	UHGV-1379461_24	PF07852	N/A	N/A	N/A	DUF1642
structural_annotation	UHGV-1379461_24	PF07852	N/A	N/A	N/A	N/A
PHROG	UHGV-1379461_25	phrog_3745	99.2	1.3e-29	N/A	unknown function
UniRef90	UHGV-1379461_25	UniRef90_A0A447UCM2	99.8	5.49e-26	Phage associated protein	N/A