UHGV-1380413 (vOTU-094065)

Viral Genome: UHGV-1380413

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1380413
vOTU ID	vOTU-094065
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0246496
Associated BioSample	SAMN04126125
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.31 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9806
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.83
Jumbo phage	No

Genome content
Genome length (bp)	36,171
GC content	49.25%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	93%
Average CDS length (bps)	671.94
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 80.31)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1380413_4	phrog_14030	42.3	0.0000000000027	N/A	unknown function
UniRef90	UHGV-1380413_4	UniRef90_UPI00164EA432	575.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1380413_4	1235797.C816_02842	230.0	0	mannosyl-glycoprotein	N/A
Pfam	UHGV-1380413_4	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-1380413_4	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1380413_4	PF08460,PF10030,TIGR02594,NF041850,COG4322,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-1380413_6	phrog_1863	67.8	9e-20	N/A	unknown function
eggNOG-mapper	UHGV-1380413_6	718252.FP2_04900	114.0	2.1e-32	N/A	N/A
PHROG	UHGV-1380413_7	phrog_30034	71.7	1.1e-20	N/A	unknown function
UniRef90	UHGV-1380413_7	UniRef90_UPI00189E45A0	147.0	5.21003e-41	chitinase	N/A
eggNOG-mapper	UHGV-1380413_7	994573.T472_0212005	106.0	1.25e-25	N/A	N/A
Pfam	UHGV-1380413_7	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
KOfam	UHGV-1380413_8	K21038	54.8	0.0000000000000011	brt; reverse transcriptase [EC:2.7.7.49]	N/A
PHROG	UHGV-1380413_8	phrog_1423	133.8	1.6e-39	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1380413_8	UniRef90_UPI00164D8919	534.0	0	RNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-1380413_8	521003.COLINT_02359	195.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-1380413_8	icity0040	49.1	0.00000000000012	RT (reverse transcriptase)	CRISPR-CAS
COG	UHGV-1380413_8	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
PHROG	UHGV-1380413_10	phrog_30516	58.0	7.4e-17	N/A	unknown function
structural_annotation	UHGV-1380413_10	PF05635,NF008911	N/A	N/A	N/A	N/A
PHROG	UHGV-1380413_11	phrog_37900	113.7	1.6e-34	N/A	unknown function
UniRef90	UHGV-1380413_11	UniRef90_UPI00164D57E4	581.0	0	N/A	N/A
eggNOG-mapper	UHGV-1380413_11	1519439.JPJG01000060_gene1894	202.0	0	N/A	N/A
Pfam	UHGV-1380413_11	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-1380413_11	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-1380413_11	PF19789,PF14686,TIGR04183,COG2512	N/A	N/A	N/A	N/A
PHROG	UHGV-1380413_12	phrog_18725	51.1	9e-21	N/A	unknown function
eggNOG-mapper	UHGV-1380413_12	1226322.HMPREF1545_00062	95.5	3.33e-22	N/A	N/A
PHROG	UHGV-1380413_13	phrog_13879	276.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1380413_13	665956.HMPREF1032_03630	213.0	0	N/A	N/A
structural_annotation	UHGV-1380413_13	PF03256,PF16466,PF13550,MF_00813,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1380413_14	phrog_1194	92.7	3e-27	N/A	unknown function
eggNOG-mapper	UHGV-1380413_14	1298920.KI911353_gene4840	136.0	1.07e-39	N/A	N/A
Pfam	UHGV-1380413_14	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1380413_14	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1380413_15	phrog_1535	189.3	0	tail length tape measure protein	tail
UniRef90	UHGV-1380413_15	UniRef90_A0A1C5N853	97.1	1.1e-16	Phage-related protein	N/A
eggNOG-mapper	UHGV-1380413_15	1123263.AUKY01000015_gene1620	195.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-1380413_15	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1380413_15	PF09325	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1380413_16	1121333.JMLH01000047_gene1011	69.7	0.000000000000422	N/A	N/A
UniRef90	UHGV-1380413_17	UniRef90_A0A847YX95	157.0	0	N/A	N/A
eggNOG-mapper	UHGV-1380413_17	469596.HMPREF9488_01311	93.6	2.29e-23	N/A	N/A
Pfam	UHGV-1380413_17	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-1380413_17	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-1380413_18	phrog_158	61.6	1.5e-17	major tail protein	tail
UniRef90	UHGV-1380413_18	UniRef90_A0A1C6L0H9	209.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1380413_18	1232453.BAIF02000058_gene1634	101.0	1.11e-25	N/A	N/A
Pfam	UHGV-1380413_18	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-1380413_18	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
Pfam	UHGV-1380413_19	PF20765	N/A	N/A	N/A	DUF6838
structural_annotation	UHGV-1380413_19	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1380413_20	476272.RUMHYD_01963	64.3	0.0000000002	N/A	N/A
eggNOG-mapper	UHGV-1380413_21	1121866.AUGK01000003_gene1432	86.7	4.49e-20	N/A	N/A
UniRef90	UHGV-1380413_22	UniRef90_UPI001898B4B4	130.0	5.53e-37	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-1380413_22	1298920.KI911353_gene2658	54.7	0.0000000394	N/A	N/A
Pfam	UHGV-1380413_22	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-1380413_22	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1380413_23	phrog_544	84.9	8.5e-25	major head protein	head and packaging
UniRef90	UHGV-1380413_23	UniRef90_UPI000625631F	63.9	0.0000000408	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1380413_23	428127.EUBDOL_01555	256.0	0	N/A	N/A
structural_annotation	UHGV-1380413_23	PF06673,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1380413_26	phrog_115	49.4	1.4e-16	minor head protein	head and packaging
UniRef90	UHGV-1380413_26	UniRef90_A0A1C5WCC8	158.0	1.4013e-45	Phage head morphogenesis protein, SPP1 gp7 family	N/A
eggNOG-mapper	UHGV-1380413_26	999411.HMPREF1092_00916	55.5	0.00000119	cell adhesion	N/A
Pfam	UHGV-1380413_26	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1380413_26	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1380413_26	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1380413_28	phrog_64	241.8	0	portal protein	head and packaging
UniRef90	UHGV-1380413_28	UniRef90_UPI00189F3DE6	591.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1380413_28	1121866.AUGK01000003_gene1429	435.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1380413_28	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1380413_28	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1380413_29	phrog_38	204.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-1380413_29	UniRef90_A0A318EQM2	492.0	0	Putative phage terminase large subunit-like protein	N/A
eggNOG-mapper	UHGV-1380413_29	1123263.AUKY01000015_gene1608	543.0	0	chromosome segregation	N/A
NCBIFam	UHGV-1380413_29	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-1380413_29	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1380413_29	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
KOfam	UHGV-1380413_31	K06400	206.9	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1380413_31	phrog_95	200.7	0	integrase	integration and excision
UniRef90	UHGV-1380413_31	UniRef90_A0A1C6EX67	360.0	0	Transposon Tn3 resolvase	N/A
eggNOG-mapper	UHGV-1380413_31	697329.Rumal_3466	316.0	0	resolvase	N/A
Pfam	UHGV-1380413_31	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1380413_31	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-1380413_31	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1380413_31	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-1380413_33	K03466	238.5	0	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	N/A
PHROG	UHGV-1380413_33	phrog_1358	200.7	0	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1380413_33	UniRef90_A0A1C5UE43	254.0	0	Stage III sporulation protein E	N/A
eggNOG-mapper	UHGV-1380413_33	877424.ATWC01000010_gene418	161.0	2.0501e-42	Ftsk_gamma	N/A
PADLOC	UHGV-1380413_33	SspH_00004	113.0	2.3e-33	SspH	SSP
Pfam	UHGV-1380413_33	PF01580	N/A	N/A	FtsK/SpoIIIE family	FtsK_SpoIIIE
COG	UHGV-1380413_33	COG1674	N/A	N/A	DNA segregation ATPase FtsK/SpoIIIE or related protein	N/A
structural_annotation	UHGV-1380413_33	PF01580,MF_01076,NF010404,COG0433	N/A	N/A	N/A	N/A
PHROG	UHGV-1380413_34	phrog_606	44.0	0.0000000000016	terminase small subunit	head and packaging
UniRef90	UHGV-1380413_34	UniRef90_UPI001D08D6B6	169.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1380413_34	1235802.C823_05975	73.9	0.000000000000086	N/A	N/A
Pfam	UHGV-1380413_34	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
PHROG	UHGV-1380413_35	phrog_1156	309.1	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1380413_35	UniRef90_H1CER1	788.0	0	Phage/plasmid primase, P4 family domain-containing protein	N/A
eggNOG-mapper	UHGV-1380413_35	649747.HMPREF0083_00553	335.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-1380413_35	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-1380413_35	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-1380413_35	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-1380413_35	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-1380413_35	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-1380413_35	PF08706,PF05272,PF02257,MF_04000,NF005477,COG3378	N/A	N/A	N/A	N/A
PHROG	UHGV-1380413_37	phrog_1829	119.6	1.9e-35	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1380413_37	UniRef90_UPI001899186E	314.0	0	primase C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1380413_37	1121866.AUGK01000003_gene1409	220.0	0	Phage plasmid primase, P4 family domain protein	N/A
Pfam	UHGV-1380413_37	PF08708	N/A	N/A	Primase C terminal 1 (PriCT-1)	PriCT_1
COG	UHGV-1380413_37	COG4983	N/A	N/A	Primase-polymerase (Primpol) domain protein	N/A
structural_annotation	UHGV-1380413_37	PF08708,PF09250,COG4983	N/A	N/A	N/A	N/A
KOfam	UHGV-1380413_40	K03465	190.2	0	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-1380413_40	phrog_85	134.2	7.80001e-40	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1380413_40	UniRef90_A0A1Y3WR29	312.0	0	Thymidylate synthase (FAD)	N/A
eggNOG-mapper	UHGV-1380413_40	720554.Clocl_3035	280.0	0	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	N/A
Pfam	UHGV-1380413_40	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
NCBIFam	UHGV-1380413_40	TIGR02170.1	N/A	N/A	FAD-dependent thymidylate synthase	N/A
COG	UHGV-1380413_40	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
structural_annotation	UHGV-1380413_40	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
KOfam	UHGV-1380413_41	K03698	47.9	0.0000000000002	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	N/A
PHROG	UHGV-1380413_41	phrog_28876	98.3	6.3e-29	metal-dependent phosphohydrolase	other
UniRef90	UHGV-1380413_41	UniRef90_A0A1C5MUY3	249.0	0	Predicted HD-superfamily hydrolase	N/A
eggNOG-mapper	UHGV-1380413_41	1235800.C819_00499	176.0	0	metal-dependent phosphohydrolase, HD sub domain	N/A
COG	UHGV-1380413_41	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-1380413_41	PF21447,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
PHROG	UHGV-1380413_42	phrog_229	123.4	1.6e-36	MazG-like pyrophosphatase	other
UniRef90	UHGV-1380413_42	UniRef90_UPI001AB02E43	164.0	0	nucleoside triphosphate pyrophosphohydrolase family protein	N/A
eggNOG-mapper	UHGV-1380413_42	428125.CLOLEP_01391	128.0	7.44e-37	MazG nucleotide pyrophosphohydrolase domain	N/A
Pfam	UHGV-1380413_42	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
COG	UHGV-1380413_42	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-1380413_42	PF03819,MF_01020,NF001613,COG0140	N/A	N/A	N/A	N/A
PHROG	UHGV-1380413_43	phrog_1485	103.9	1.9e-30	N/A	unknown function
UniRef90	UHGV-1380413_43	UniRef90_UPI00164CE11C	162.0	0	nucleotide modification associated domain-containing protein	N/A
eggNOG-mapper	UHGV-1380413_43	1415774.U728_1099	108.0	6.96e-30	N/A	N/A
Pfam	UHGV-1380413_43	PF07659	N/A	N/A	Nucleotide modification associated domain 1	DUF1599
structural_annotation	UHGV-1380413_44	PF05037	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-1380413_46	cluster_73853	35.8	0.000000434	NA	N/A
PHROG	UHGV-1380413_47	phrog_434	104.1	1.4e-30	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1380413_47	UniRef90_UPI00164ECEF5	516.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-1380413_47	1219626.HMPREF1639_07320	348.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-1380413_47	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
COG	UHGV-1380413_47	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1380413_47	PF09588,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-1380413_48	phrog_155	72.3	6.8e-21	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1380413_48	UniRef90_UPI001A9A8367	182.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-1380413_48	1151292.QEW_4381	86.3	8.71e-18	ERF superfamily	N/A
Pfam	UHGV-1380413_48	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1380413_48	PF04404	N/A	N/A	N/A	N/A
PHROG	UHGV-1380413_49	phrog_1252	474.2	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1380413_49	UniRef90_UPI00189DB5D1	740.0	0	DNA polymerase elongation subunit (family B)	N/A
eggNOG-mapper	UHGV-1380413_49	1121866.AUGK01000003_gene1403	528.0	0	DNA replication proofreading	N/A
COG	UHGV-1380413_49	COG0417	N/A	N/A	DNA polymerase B elongation subunit	N/A
structural_annotation	UHGV-1380413_49	PF08490,MF_04100,TIGR00592,COG0417	N/A	N/A	N/A	N/A
KOfam	UHGV-1380413_50	K00558	43.6	0.0000000000028	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1380413_50	phrog_17284	80.3	2.4e-23	N/A	unknown function
UniRef90	UHGV-1380413_50	UniRef90_UPI001C0E1B0C	93.6	6.71e-23	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1380413_50	1121871.AUAT01000002_gene1371	90.5	2.07e-20	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1380413_50	oMTase_00023	80.0	5.8e-23	orphan methyltransferase	RM
Pfam	UHGV-1380413_50	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1380413_50	COG0270	N/A	N/A	DNA-cytosine methylase	N/A